Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002600

Physical Location & Seq

Genomic Coordinates Reverse (-)

21979039 .. 21982981

Gene Structure 3943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCAGAAGAGGGATTTTGGACTGAGAAGGATGTGAAGTTTACTGCTGCTTGGCTTCAGGACTTGATTGCTGTTGGGTACAACCAACCGAGATTAATGTCATTGGATTTGGGTAGGCCACTGGGAAATATTGGTCATGGGGATAGAAGAGAATTTGTTCCTCAAAAGTTCCCATCTGTTCATCTTGGAGTTGAGGAAACGGGAACTGTGAACTATGAAATTGGAAATTTGATCCGATGGAGAAAGAACTTCGGGAATGTTGTCCTTATTATGTTCTGCAGTGGCCCTGTGGAACGTACTGCTCTTGAATGGAGATTGCTTTATGGGAGGATATTCAAAACTGTGATCATGTTGTCAGTATCGAAGAATCTAGACCTTGCTGTTGAAGAAGGAAAACTGGAGAATGTTTACAAGTACCTACCCAAAATATTTGATCGATATTCTGGTGCAGATGGATTTTTATTCCTTCACGACGACACTATTCTTAATTACTGGAATCTTCTACAGGCAGACAAAAACAAATTATGGATCACAAATGAGGTATCCAATTCTTGGACCAAGGTGTCGCCAAATGACAACTCAGATTGGTTTTCAAAGCAAGCAAGCATGGTAAAGAAGGTTGTTAGCATGATGCCAGCTCACTTCCAAGTCAGTTATAAGAACACCATACCTAGTCACAAGAGCTTCATAGTATGCAGTTCTGAGATATTCTACATCCCTCGTCGCTTCATATCTGACTTCGTTGATCTTGTTAATCTAGTGGGAGATCTGGAAATCCATCACAAAGTTGCCATTCCGATGTTCTTTCTAGCACTAGATTCACCTCAGAATTTTGACTCGGTGCTAAGCACAATGGTCTACGAGGAAGAATCTGCTTCTACTAATTCTTCATCCCTTTATTCGGCCCAAGTGCCTGCCGCTCACCCATGGAGTGTGTCAAGCGAACAAGATTTCATAAAACTAATAAGAACAATGGCAGAAGGTGACCCTCTCTTAATGGAGTTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

336

Amino Acids

38.38

Weight (kDa)

5.54

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41770 AT3G57420
fragaria_vesca	FvH4_6g23790 FvH4_6g23790 FvH4_7g01460
malus_domestica	MD07G1018300.v1.1 MD12G1073600.v1.1 MD14G1071900.v1.1
prunus_persica	Prupe.2G020200_v2.0.a1 Prupe.7G061300_v2.0.a1
pyrus_communis	pycom07g01440 pycom12g06360 pycom14g06170
rosa_chinensis	RchiOBHm_Chr1g0317301 RchiOBHm_Chr3g0482321
rosa_laevigata	RLG00000023359 RLG00000029570 RLG00000030608
rosa_multiflora	Rmu_co8232473.1_g000001 Rmu_co8457415.1_g000001 Rmu_sc0000135.1_g000005 Rmu_sc0013869.1_g000004 Rmu_sc0015957.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330510 Rroxscaffold_6G00399430 Rroxscaffold_6G00399450 Rroxscaffold_6G00399930
rosa_rugosa	Rorug01G0015700 Rorug03G0195800 Rorug03G0195800
rosa_samantha	Rh1AG027100 Rh1BG023000 Rh1CG025100 Rh1DG046100 Rh3AG247400 Rh3BG281900 Rh3CG278900 Rh3DG274700
rosa_wichuraiana	Rw1G001870 Rw3G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	657
AasI	GACNNNNNNGTC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccBSI	CCGCTC	1 cut(s)	920
AccI	GTMKAC	1 cut(s)	858
AciI	CCGC	1 cut(s)	918
AclWI	GGATC	2 cut(s)	226, 536
AcsI	RAATTY	3 cut(s)	152, 226, 829
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	80, 298, 416
AfiI	CCNNNNNNNGG	2 cut(s)	552, 901
AgsI	TTSAA	4 cut(s)	308, 337, 386, 594
AluBI	AGCT	2 cut(s)	638, 684
AluI	AGCT	2 cut(s)	638, 684
AlwI	GGATC	2 cut(s)	226, 536
AoxI	GGCC	3 cut(s)	116, 283, 903
ApeKI	GCWGC	1 cut(s)	47
ApoI	RAATTY	3 cut(s)	152, 226, 829
AseI	ATTAAT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	3 cut(s)	284, 555, 904
AsuHPI	GGTGA	3 cut(s)	813, 914, 995
AvaII	GGWCC	1 cut(s)	555
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	4 cut(s)	181, 231, 446, 786
BciVI	GTATCC	1 cut(s)	553
BclI	TGATCA	1 cut(s)	345
BfaI	CTAG	5 cut(s)	371, 672, 758, 809, 815
BfmI	CTRYAG	2 cut(s)	277, 503
BfuI	GTATCC	1 cut(s)	553
BglII	AGATCT	1 cut(s)	766
BisI	GCNGC	2 cut(s)	48, 918
BlpI	GCTNAGC	1 cut(s)	845
BlsI	GCNGC	2 cut(s)	49, 919
Bme18I	GGWCC	1 cut(s)	555
BmgT120I	GGNCC	3 cut(s)	284, 555, 904
BmrI	ACTGGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	621
BmuI	ACTGGG	1 cut(s)	131
BpmI	CTGGAG	1 cut(s)	419
Bpu1102I	GCTNAGC	1 cut(s)	845
Bsa29I	ATCGAT	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	558, 926
Bsc4I	CCNNNNNNNGG	2 cut(s)	552, 901
Bse1I	ACTGG	3 cut(s)	126, 402, 497
BseCI	ATCGAT	1 cut(s)	436
BseDI	CCNNGG	2 cut(s)	558, 926
BseGI	GGATG	3 cut(s)	37, 714, 890
BseLI	CCNNNNNNNGG	2 cut(s)	552, 901
BseMII	CTCAG	4 cut(s)	15, 594, 693, 839
BseNI	ACTGG	3 cut(s)	126, 402, 497
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	3 cut(s)	118, 285, 905
BshVI	ATCGAT	1 cut(s)	436
BslI	CCNNNNNNNGG	2 cut(s)	552, 901
BsnI	GGCC	3 cut(s)	118, 285, 905
Bsp143I	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
Bsp1720I	GCTNAGC	1 cut(s)	845
Bsp19I	CCATGG	1 cut(s)	926
BspACI	CCGC	1 cut(s)	918
BspANI	GGCC	3 cut(s)	118, 285, 905
BspCNI	CTCAG	4 cut(s)	16, 593, 694, 838
BspDI	ATCGAT	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	281
BspPI	GGATC	2 cut(s)	226, 536
BsrBI	CCGCTC	1 cut(s)	920
BsrI	ACTGG	3 cut(s)	126, 402, 497
BssECI	CCNNGG	2 cut(s)	558, 926
BssMI	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
BssT1I	CCWWGG	2 cut(s)	558, 926
Bst4CI	ACNGT	2 cut(s)	208, 343
Bst6I	CTCTTC	2 cut(s)	3, 142
BstC8I	GCNNGC	4 cut(s)	600, 604, 636, 915
BstDEI	CTNAG	5 cut(s)	24, 580, 702, 825, 845
BstDSI	CCRYGG	1 cut(s)	926
BstEII	GGTNACC	1 cut(s)	983
BstF5I	GGATG	3 cut(s)	37, 714, 890
BstKTI	GATC	6 cut(s)	234, 348, 436, 531, 748, 769
BstMBI	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
BstPI	GGTNACC	1 cut(s)	983
BstSFI	CTRYAG	2 cut(s)	277, 503
BstV1I	GCAGC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
Bsu15I	ATCGAT	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	553
BsuRI	GGCC	3 cut(s)	118, 285, 905
BsuTUI	ATCGAT	1 cut(s)	436
BtgI	CCRYGG	1 cut(s)	926
BtsCI	GGATG	3 cut(s)	37, 714, 890
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	2 cut(s)	119, 286
Cac8I	GCNNGC	4 cut(s)	600, 604, 636, 915
Cfr13I	GGNCC	3 cut(s)	284, 555, 904
ClaI	ATCGAT	1 cut(s)	436
Csp6I	GTAC	3 cut(s)	79, 297, 415
CviAII	CATG	5 cut(s)	137, 349, 607, 628, 927
CviJI	RGCY	6 cut(s)	55, 118, 285, 638, 684, 905
CviKI_1	RGCY	6 cut(s)	55, 118, 285, 638, 684, 905
CviQI	GTAC	3 cut(s)	79, 297, 415
DdeI	CTNAG	5 cut(s)	24, 580, 702, 825, 845
DpnI	GATC	6 cut(s)	233, 347, 435, 530, 747, 768
DpnII	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
DrdI	GACNNNNNNGTC	1 cut(s)	562
DseDI	GACNNNNNNGTC	1 cut(s)	562
Eam1104I	CTCTTC	2 cut(s)	3, 142
EarI	CTCTTC	2 cut(s)	3, 142
Eco130I	CCWWGG	2 cut(s)	558, 926
Eco47I	GGWCC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	983
EcoO65I	GGTNACC	1 cut(s)	983
EcoT14I	CCWWGG	2 cut(s)	558, 926
ErhI	CCWWGG	2 cut(s)	558, 926
FaeI	CATG	5 cut(s)	140, 352, 610, 631, 930
FatI	CATG	5 cut(s)	136, 348, 606, 627, 926
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	2 cut(s)	48, 918
FokI	GGATG	3 cut(s)	44, 701, 877
Fsp4HI	GCNGC	2 cut(s)	48, 918
FspBI	CTAG	5 cut(s)	371, 672, 758, 809, 815
GluI	GCNGC	2 cut(s)	48, 918
GsuI	CTGGAG	1 cut(s)	419
HaeIII	GGCC	3 cut(s)	118, 285, 905
Hin1II	CATG	5 cut(s)	140, 352, 610, 631, 930
HinfI	GANTC	5 cut(s)	367, 496, 818, 836, 869
HphI	GGTGA	3 cut(s)	813, 914, 995
Hpy166II	GTNNAC	4 cut(s)	42, 211, 409, 859
Hpy188I	TCNGA	7 cut(s)	236, 583, 703, 736, 798, 828, 1010
Hpy188III	TCNNGA	6 cut(s)	59, 253, 305, 371, 470, 770
Hpy8I	GTNNAC	4 cut(s)	42, 211, 409, 859
Hpy99I	CGWCG	2 cut(s)	476, 726
HpyAV	CCTTC	5 cut(s)	22, 383, 476, 610, 974
HpyCH4III	ACNGT	2 cut(s)	208, 343
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	3 cut(s)	279, 449, 696
HpyF3I	CTNAG	5 cut(s)	24, 580, 702, 825, 845
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	5 cut(s)	140, 352, 610, 631, 930
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	621
MaeI	CTAG	5 cut(s)	371, 672, 758, 809, 815
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	2 cut(s)	674, 983
MalI	GATC	6 cut(s)	233, 347, 435, 530, 747, 768
MbiI	CCGCTC	1 cut(s)	920
MboI	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
MboII	GAAGA	7 cut(s)	20, 159, 376, 398, 491, 878, 879
MflI	RGATCY	1 cut(s)	766
MluCI	AATT	8 cut(s)	152, 219, 226, 487, 521, 547, 829, 883
MlyI	GAGTC	1 cut(s)	830
MnlI	CCTC	9 cut(s)	4, 171, 187, 321, 532, 729, 834, 856, 999
MroXI	GAANNNNTTC	1 cut(s)	156
MseI	TTAA	4 cut(s)	95, 486, 753, 995
MslI	CAYNNNNRTG	1 cut(s)	797
NcoI	CCATGG	1 cut(s)	926
NdeII	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
NlaIII	CATG	5 cut(s)	140, 352, 610, 631, 930
NmuCI	GTSAC	2 cut(s)	674, 983
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	4 cut(s)	367, 496, 818, 869
PflMI	CCANNNNNTGG	1 cut(s)	552
PkrI	GCNGC	2 cut(s)	49, 919
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
PshBI	ATTAAT	1 cut(s)	95
PsiI	TTATAA	1 cut(s)	657
PspEI	GGTNACC	1 cut(s)	983
PspPI	GGNCC	3 cut(s)	284, 555, 904
PstI	CTGCAG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	3 cut(s)	80, 298, 416
RsaNI	GTAC	3 cut(s)	79, 297, 415
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	4 cut(s)	95, 486, 753, 995
SatI	GCNGC	2 cut(s)	48, 918
Sau3AI	GATC	6 cut(s)	231, 345, 433, 528, 745, 766
Sau96I	GGNCC	3 cut(s)	284, 555, 904
SchI	GAGTC	1 cut(s)	830
SfaNI	GCATC	1 cut(s)	621
SfcI	CTRYAG	2 cut(s)	277, 503
SinI	GGWCC	1 cut(s)	555
SmiMI	CAYNNNNRTG	1 cut(s)	797
Sse9I	AATT	8 cut(s)	152, 219, 226, 487, 521, 547, 829, 883
SsiI	CCGC	1 cut(s)	918
SspI	AATATT	2 cut(s)	130, 429
SspMI	CTAG	5 cut(s)	371, 672, 758, 809, 815
StyI	CCWWGG	2 cut(s)	558, 926
TaaI	ACNGT	2 cut(s)	208, 343
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	362, 436
TasI	AATT	8 cut(s)	152, 219, 226, 487, 521, 547, 829, 883
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	4 cut(s)	367, 496, 818, 869
Tru1I	TTAA	4 cut(s)	95, 486, 753, 995
Tru9I	TTAA	4 cut(s)	95, 486, 753, 995
TscAI	CASTG	2 cut(s)	126, 286
TseFI	GTSAC	2 cut(s)	674, 983
TseI	GCWGC	1 cut(s)	47
Tsp45I	GTSAC	2 cut(s)	674, 983
TspDTI	ATGAA	6 cut(s)	170, 231, 676, 718, 879, 943
TspRI	CASTG	2 cut(s)	126, 286
Van91I	CCANNNNNTGG	1 cut(s)	552
VpaK11BI	GGWCC	1 cut(s)	555
VspI	ATTAAT	1 cut(s)	95
XapI	RAATTY	3 cut(s)	152, 226, 829
XbaI	TCTAGA	1 cut(s)	370
XmiI	GTMKAC	1 cut(s)	858
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	5 cut(s)	371, 672, 758, 809, 815

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.