Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002600

Physical Location & Seq

Genomic Coordinates Forward (+)

6480425 .. 6483476

Gene Structure 3052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06360.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1644 bp

ATGGGTGAGGGTGCTAGGCAAGAGACTATCTTGCAGTATAGCCATGAGAATCCCAACAGGACCATTGTGAACCCGTATATTCATTTCGGGCAACGCTCTGTGTGGCCGAGAGGTTTGCCATTGGAGAATGTTGGTGAGCTTGGCCATGAAGAGTTCTACACTGAGGTTTTTGGTGGAAAGCAGTTTATACAACAGGGTATATCCAATGGACTTCCTGATGTCGATTCTGTGTTTTATTTTACACGAAAATCGGGTTTGGAAGCGTTTGATATCAGGTTTGATGACCATGCCCCAAAAGTGGCATTGCCGCAGGGGACGATGGTGCCTGTTAATTCTTTCAATACTATTTACCATTCGTCGGCATTTTGGGGTTTGATGCTTCCTGTTTCTGTTAGCACAATGGCTTCTGATATATTAAGGGGTTACTGGGGGCAAAGGCTTTTGTGGGAAATAGGTGGATATGTTGTAGTTTATCCCCCAACTGTTCATCGGTATGATAGAATTCAGGCATACCCCTTTTCTGAAGAGAAAGATCTTCATGTTAATGTAGGACGTTTGATCAAATTTTTGGTTTCATGGAGATCGGGTAAGCATAGGTTGTTTGAAAAGATTTTGGAGTTAAGTTTTGTCATGGCAGAAGAGGGGTTTTGGACTGAGAAGGATCTGAAGTTTACCGCTGCTTGGCTTCATGACTTAATTGCTGTAGGGTATCAGCAGCCTAGATTAATGTCATTGGAATTGGATCGGCCACGGGCAAATATTGGTCATGGGGATACAAAAGAGTTTGTCCCGCAAAAATTTCCATCAGTTCATCTTGGAGTTGAGGAAACAGGAACAGTGAACTATGAAATTGGAAATTTGATTAGATGGAGGAAGAATTTTGGGAATGTTGTGCTTATCATGTTTTGCAGTGGACCTGTGGAACGTACTGCTTTGGAATGGAGATTGCTTTATGGGCGGATATTTAAAACTGTGATCATTTTGTCTGATCTAAAGAACACCGATCTTGCTGTTGAAGAAGGAAAATTGGATAATATATACAAGTACATGCCCAAAATTTTTGATCGATATTCCGGTGCAGATGGATTTTTATTTGTTCAGGACAATACTATTCTTAATTACTGGAATCTTCTACAGGCAGACAAAACTAAATTGTGGATCACAAATGAGGTATCCAAGTCTTGGAGTACTGTGTCAACAAAAGACAACCCAGAAGAATGGTTTTCAAAGCAAGCAGGCATGGTAAAGAAGGTTGTTAGCACGATGCCAGTTCACTTCCAAGTCGGTTATAAGAACAGTGTAACCAGTCGCAAGAGCGTCACATTATGCAGTTCTGAGGTGTTCTACATCCCTCGTCGGTTTGTAGCTGACTTCGTCGATCTTGTTAATCTAGTTGGGAATCTAGAAATTCATTACAAGGTTGCCATTCCAATGTTCTTTCACGCATTAGATTCACCTCAGAACTTTGACTCGGTGCTCAGTACAATGATCTATGAGGAACAACTACCTTCTACGAATTCTTCATCCTTGTATTCGGCTAAAGTACCTGCGGTTCACCCATGGAGTGTGACAAGCGAACAAGAGTTCATTAAACTAATAAGGGTAATGGCAGAAGGTGATCCTCTCCTAATGGAGTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009832 GO:0009889 GO:0009987 GO:0010383 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016043 GO:0016051 GO:0019222 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0051128 GO:0051273 GO:0051274 GO:0052324 GO:0052541 GO:0060255 GO:0065007 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097708 GO:0098791 GO:1901576 GO:1903338 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STELLO

Protein Analysis

548

Amino Acids

62.72

Weight (kDa)

6.14

Isoelectric Point (pI)

36.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41770 AT3G57420
fragaria_vesca	FvH4_6g23790 FvH4_6g23790 FvH4_7g01460
malus_domestica	MD07G1018300.v1.1 MD12G1073600.v1.1 MD14G1071900.v1.1
prunus_persica	Prupe.2G020200_v2.0.a1 Prupe.7G061300_v2.0.a1
pyrus_communis	pycom07g01440 pycom12g06360 pycom14g06170
rosa_chinensis	RchiOBHm_Chr1g0317301 RchiOBHm_Chr3g0482321
rosa_laevigata	RLG00000023359 RLG00000029570 RLG00000030608
rosa_multiflora	Rmu_co8232473.1_g000001 Rmu_co8457415.1_g000001 Rmu_sc0000135.1_g000005 Rmu_sc0013869.1_g000004 Rmu_sc0015957.1_g000002
rosa_roxburghii	Rroxscaffold_4G00330510 Rroxscaffold_6G00399430 Rroxscaffold_6G00399450 Rroxscaffold_6G00399930
rosa_rugosa	Rorug01G0015700 Rorug03G0195800 Rorug03G0195800
rosa_samantha	Rh1AG027100 Rh1BG023000 Rh1CG025100 Rh1DG046100 Rh3AG247400 Rh3BG281900 Rh3CG278900 Rh3DG274700
rosa_wichuraiana	Rw1G001870 Rw3G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1290
Acc36I	ACCTGC	1 cut(s)	1555
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	1182
AciI	CCGC	5 cut(s)	308, 675, 791, 958, 1550
AclWI	GGATC	4 cut(s)	669, 750, 1166, 1613
AcoI	YGGCCR	3 cut(s)	104, 142, 746
AcsI	RAATTY	8 cut(s)	501, 563, 797, 856, 877, 1056, 1407, 1516
AcuI	CTGAAG	2 cut(s)	543, 686
AfaI	GTAC	5 cut(s)	928, 1046, 1189, 1483, 1545
AfiI	CCNNNNNNNGG	4 cut(s)	298, 358, 681, 1182
AgsI	TTSAA	4 cut(s)	340, 605, 1016, 1227
AluBI	AGCT	2 cut(s)	139, 1367
AluI	AGCT	2 cut(s)	139, 1367
Alw21I	GWGCWC	1 cut(s)	1479
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	4 cut(s)	669, 750, 1166, 1613
AoxI	GGCC	3 cut(s)	104, 142, 746
ApeKI	GCWGC	2 cut(s)	677, 715
ApoI	RAATTY	8 cut(s)	501, 563, 797, 856, 877, 1056, 1407, 1516
AseI	ATTAAT	1 cut(s)	725
AspS9I	GGNCC	2 cut(s)	60, 914
AsuHPI	GGTGA	5 cut(s)	17, 146, 1446, 1547, 1628
AvaII	GGWCC	2 cut(s)	60, 914
BalI	TGGCCA	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	1479
BbvI	GCAGC	2 cut(s)	664, 727
BccI	CCATC	4 cut(s)	313, 811, 861, 1076
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciVI	GTATCC	2 cut(s)	766, 1183
BclI	TGATCA	2 cut(s)	558, 975
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	4 cut(s)	15, 720, 1391, 1403
BfmI	CTRYAG	2 cut(s)	702, 1133
BfuAI	ACCTGC	1 cut(s)	1555
BfuI	GTATCC	2 cut(s)	766, 1183
BglII	AGATCT	1 cut(s)	532
BisI	GCNGC	3 cut(s)	308, 678, 716
BlsI	GCNGC	3 cut(s)	309, 679, 717
BmcAI	AGTACT	1 cut(s)	1189
Bme18I	GGWCC	2 cut(s)	60, 914
BmgT120I	GGNCC	2 cut(s)	60, 914
BmiI	GGNNCC	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	436
BmsI	GCATC	2 cut(s)	366, 1254
BmuI	ACTGGG	1 cut(s)	436
Bsa29I	ATCGAT	1 cut(s)	1066
BsaJI	CCNNGG	2 cut(s)	749, 1559
BsaWI	WCCGGW	1 cut(s)	1073
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 358, 681, 1182
Bse1I	ACTGG	4 cut(s)	431, 1127, 1268, 1305
Bse3DI	GCAATG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	1066
BseDI	CCNNGG	2 cut(s)	749, 1559
BseGI	GGATG	2 cut(s)	1347, 1523
BseLI	CCNNNNNNNGG	4 cut(s)	298, 358, 681, 1182
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	5 cut(s)	153, 645, 1326, 1472, 1492
BseNI	ACTGG	4 cut(s)	431, 1127, 1268, 1305
BseXI	GCAGC	2 cut(s)	664, 727
BsgI	GTGCAG	1 cut(s)	1098
BshFI	GGCC	3 cut(s)	106, 144, 748
BshNI	GGYRCC	1 cut(s)	322
BshVI	ATCGAT	1 cut(s)	1066
BsiHKAI	GWGCWC	1 cut(s)	1479
BsiSI	CCGG	1 cut(s)	1074
BslFI	GGGAC	2 cut(s)	328, 773
BslI	CCNNNNNNNGG	4 cut(s)	298, 358, 681, 1182
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	2 cut(s)	328, 773
BsnI	GGCC	3 cut(s)	106, 144, 748
Bsp1286I	GDGCHC	1 cut(s)	1479
Bsp19I	CCATGG	1 cut(s)	1559
BspACI	CCGC	5 cut(s)	308, 675, 791, 958, 1550
BspANI	GGCC	3 cut(s)	106, 144, 748
BspCNI	CTCAG	5 cut(s)	154, 646, 1327, 1471, 1491
BspDI	ATCGAT	1 cut(s)	1066
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	1555
BspPI	GGATC	4 cut(s)	669, 750, 1166, 1613
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	1 cut(s)	302
BsrI	ACTGG	4 cut(s)	431, 1127, 1268, 1305
BssECI	CCNNGG	2 cut(s)	749, 1559
BssT1I	CCWWGG	1 cut(s)	1559
Bst4CI	ACNGT	5 cut(s)	484, 838, 973, 1192, 1298
Bst6I	CTCTTC	3 cut(s)	144, 519, 633
BstC8I	GCNNGC	2 cut(s)	1233, 1237
BstDEI	CTNAG	5 cut(s)	162, 654, 1335, 1458, 1478
BstDSI	CCRYGG	2 cut(s)	749, 1559
BstF5I	GGATG	2 cut(s)	1347, 1523
BstMAI	GTCTC	1 cut(s)	17
BstMWI	GCNNNNNNNGC	1 cut(s)	955
BstNSI	RCATGY	1 cut(s)	1051
BstSFI	CTRYAG	2 cut(s)	702, 1133
BstV1I	GCAGC	2 cut(s)	664, 727
BstX2I	RGATCY	2 cut(s)	532, 661
BstXI	CCANNNNNNTGG	1 cut(s)	1218
BstYI	RGATCY	2 cut(s)	532, 661
Bsu15I	ATCGAT	1 cut(s)	1066
BsuI	GTATCC	2 cut(s)	766, 1183
BsuRI	GGCC	3 cut(s)	106, 144, 748
BsuTUI	ATCGAT	1 cut(s)	1066
BtgI	CCRYGG	2 cut(s)	749, 1559
BtsCI	GGATG	2 cut(s)	1347, 1523
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	4 cut(s)	159, 843, 916, 1303
BveI	ACCTGC	1 cut(s)	1555
Cac8I	GCNNGC	2 cut(s)	1233, 1237
CciI	TCATGA	1 cut(s)	688
Cfr13I	GGNCC	2 cut(s)	60, 914
ClaI	ATCGAT	1 cut(s)	1066
CseI	GACGC	1 cut(s)	1306
Csp6I	GTAC	5 cut(s)	927, 1045, 1188, 1482, 1544
CviQI	GTAC	5 cut(s)	927, 1045, 1188, 1482, 1544
DdeI	CTNAG	5 cut(s)	162, 654, 1335, 1458, 1478
DraI	TTTAAA	1 cut(s)	967
EaeI	YGGCCR	3 cut(s)	104, 142, 746
Eam1104I	CTCTTC	3 cut(s)	144, 519, 633
EarI	CTCTTC	3 cut(s)	144, 519, 633
EciI	GGCGGA	1 cut(s)	973
Eco130I	CCWWGG	1 cut(s)	1559
Eco32I	GATATC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	60, 914
Eco57I	CTGAAG	2 cut(s)	543, 686
EcoRI	GAATTC	2 cut(s)	501, 1516
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	1559
ErhI	CCWWGG	1 cut(s)	1559
FaqI	GGGAC	2 cut(s)	328, 773
FauI	CCCGC	1 cut(s)	798
FbaI	TGATCA	2 cut(s)	558, 975
Fnu4HI	GCNGC	3 cut(s)	308, 678, 716
FokI	GGATG	2 cut(s)	1334, 1510
Fsp4HI	GCNGC	3 cut(s)	308, 678, 716
FspBI	CTAG	4 cut(s)	15, 720, 1391, 1403
GluI	GCNGC	3 cut(s)	308, 678, 716
HaeIII	GGCC	3 cut(s)	106, 144, 748
HapII	CCGG	1 cut(s)	1074
HgaI	GACGC	1 cut(s)	1306
HincII	GTYRAC	1 cut(s)	1197
HindII	GTYRAC	1 cut(s)	1197
HinfI	GANTC	6 cut(s)	49, 224, 1126, 1399, 1451, 1469
HpaII	CCGG	1 cut(s)	1074
HphI	GGTGA	5 cut(s)	17, 146, 1446, 1547, 1628
Hpy166II	GTNNAC	7 cut(s)	70, 672, 841, 914, 1197, 1273, 1555
Hpy188I	TCNGA	6 cut(s)	409, 523, 666, 988, 1336, 1461
Hpy188III	TCNNGA	4 cut(s)	215, 689, 1100, 1403
Hpy8I	GTNNAC	7 cut(s)	70, 672, 841, 914, 1197, 1273, 1555
Hpy99I	CGWCG	3 cut(s)	361, 1359, 1379
HpyAV	CCTTC	5 cut(s)	652, 1013, 1243, 1518, 1607
HpyCH4III	ACNGT	5 cut(s)	484, 838, 973, 1192, 1298
HpyCH4IV	ACGT	2 cut(s)	553, 925
HpyCH4V	TGCA	4 cut(s)	34, 909, 1079, 1329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	955
HpyF3I	CTNAG	5 cut(s)	162, 654, 1335, 1458, 1478
HpySE526I	ACGT	2 cut(s)	553, 925
Ksp22I	TGATCA	2 cut(s)	558, 975
Lsp1109I	GCAGC	2 cut(s)	664, 727
LweI	GCATC	2 cut(s)	366, 1254
MaeI	CTAG	4 cut(s)	15, 720, 1391, 1403
MaeII	ACGT	2 cut(s)	553, 925
MaeIII	GTNAC	4 cut(s)	422, 1300, 1318, 1567
MboII	GAAGA	9 cut(s)	161, 527, 536, 650, 886, 1028, 1121, 1226, 1512
MflI	RGATCY	2 cut(s)	532, 661
MhlI	GDGCHC	1 cut(s)	1479
MlsI	TGGCCA	1 cut(s)	144
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	1463
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MslI	CAYNNNNRTG	3 cut(s)	492, 543, 1430
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	1074
MwoI	GCNNNNNNNGC	1 cut(s)	955
NcoI	CCATGG	1 cut(s)	1559
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	2 cut(s)	1318, 1567
NspI	RCATGY	1 cut(s)	1051
PagI	TCATGA	1 cut(s)	688
PfeI	GAWTC	5 cut(s)	49, 224, 1126, 1399, 1451
PflFI	GACNNNGTC	1 cut(s)	1373
PflMI	CCANNNNNTGG	1 cut(s)	1182
PkrI	GCNGC	3 cut(s)	309, 679, 717
PleI	GAGTC	1 cut(s)	1463
PpsI	GAGTC	1 cut(s)	1463
PshBI	ATTAAT	1 cut(s)	725
PsiI	TTATAA	1 cut(s)	1290
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	2 cut(s)	60, 914
PsrI	GAACNNNNNNTAC	2 cut(s)	1536, 1568
PsuI	RGATCY	2 cut(s)	532, 661
PsyI	GACNNNGTC	1 cut(s)	1373
RsaI	GTAC	5 cut(s)	928, 1046, 1189, 1483, 1545
RsaNI	GTAC	5 cut(s)	927, 1045, 1188, 1482, 1544
RseI	CAYNNNNRTG	3 cut(s)	492, 543, 1430
SatI	GCNGC	3 cut(s)	308, 678, 716
Sau96I	GGNCC	2 cut(s)	60, 914
ScaI	AGTACT	1 cut(s)	1189
SchI	GAGTC	1 cut(s)	1463
SduI	GDGCHC	1 cut(s)	1479
SfaNI	GCATC	2 cut(s)	366, 1254
SfcI	CTRYAG	2 cut(s)	702, 1133
SinI	GGWCC	2 cut(s)	60, 914
SmiMI	CAYNNNNRTG	3 cut(s)	492, 543, 1430
SsiI	CCGC	5 cut(s)	308, 675, 791, 958, 1550
SspI	AATATT	1 cut(s)	760
SspMI	CTAG	4 cut(s)	15, 720, 1391, 1403
StyI	CCWWGG	1 cut(s)	1559
TaaI	ACNGT	5 cut(s)	484, 838, 973, 1192, 1298
TaiI	ACGT	2 cut(s)	556, 928
TaqI	TCGA	3 cut(s)	222, 1066, 1377
TatI	WGTACW	3 cut(s)	1044, 1187, 1481
TauI	GCSGC	1 cut(s)	310
TfiI	GAWTC	5 cut(s)	49, 224, 1126, 1399, 1451
TscAI	CASTG	4 cut(s)	166, 843, 916, 1303
TseFI	GTSAC	2 cut(s)	1318, 1567
TseI	GCWGC	2 cut(s)	677, 715
Tsp45I	GTSAC	2 cut(s)	1318, 1567
TspRI	CASTG	4 cut(s)	166, 843, 916, 1303
Tth111I	GACNNNGTC	1 cut(s)	1373
Van91I	CCANNNNNTGG	1 cut(s)	1182
VpaK11BI	GGWCC	2 cut(s)	60, 914
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	8 cut(s)	501, 563, 797, 856, 877, 1056, 1407, 1516
XbaI	TCTAGA	1 cut(s)	1402
XceI	RCATGY	1 cut(s)	1051
XspI	CTAG	4 cut(s)	15, 720, 1391, 1403
ZrmI	AGTACT	1 cut(s)	1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.