Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007852

Physical Location & Seq

Genomic Coordinates Forward (+)

1654403 .. 1657003

Gene Structure 2601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2514 bp

ATGCGTCCATTTCCGGTTCGATATGCGTCCAAGATTCTTCAAGAAATAAGAAAATTAGAAAATTACAAAACCCCTAAATCACCAAATGGAAAAGAAAGTAGCTCACCTCTTTCAGTGTGTGTCATTAGCTGCGAGCGTGAGGGACGACGGCCAACAGAGGAGAGAGGACACTCTGCGCACTGCAGACAACTGAGCAAAGAGAGAGTGAGAGAGAGCTCAGAGAAGAAGACGACGCTCTGCAGTGATGATAATAATCATTTTTTATTTTTTATTTTATTTAAAAGGGAACAGCCGGTGGCCATTTTGTCACTACATTATCAAACGAAAAGAATTAGAGAGAAAGGGGCAGCAACAAATGTTAAAATGCCACCTCAGTCCCCACCCCCTAAATTCCAGATCTTCCACGGCCACCGCAAGCCCACACAGAACCGCCCCACCGTCCGCGGCGGCCTCTTCTCCGACCGTGTCTCTCAGCCGAGCCGCAAATACCCCACCACCGTAACTCAATCCCAGCCCTTCGATCTCTCCAAGTGGGACCCACACCTGCCCCAAACCTCGCCGTCCACTTCATCGCCCAACCCCGACGACACGACCCTCCTCTCGTTCCTCTCCCCCATCGCCCGCTTCATACTCGATGCTTTCCGCAAGAACCGGAACCACTGGGGCCCGCCAGTCGTCTCGGAGCTCCGGAAGTTCCGCCGGGTCACGCCGGACCTCGTCGCCGAGGTGCTCAAGGTCCAGAATGACCCCGTTTCGGCCTCCAAGTTCTTCCACTGGGCAGGTAAGCAAAAGGGTTTCAAGCACACTTATGCTTCGTACAATGCCTTGGCTTATTGTCTGAACCGGTCCAACCGGTTCCGGTCGGCGGACCAAGTCCCCGAGCTGATGGACTCGCAGGGCAAACCGCCGAGCGAGAAACAGTTTGAGATTCTCATCAGAATGCACTCTGATGCCAATAGAGGTCTCAGGGTTTATTATGTGTATGAAAAAATGAAGAAATTTGGGGTTAAACCCAGGGTTTTCTTGTACAATAGGATCATGGATGCGTTGGCGAAAACGGGTTATTTGGATTTGGCCTTATCGGTTTACGATGACTTTCGTGATGATGGATTGGTGGAGGAGAGTGTTACTTTCATGATCTTGATAAAGGGTATGTGTAAAATGGGAAGAATTGATGAAATGTTGCAGCTTTTGGAGAGAATGAGGGCGAATTTGTGTAAACCGGACGTGTTTGCATACACGGCAATGATTAAGGTTTTGCTTTCAGAGGGGAACTTAGATGGGTGTTTGAGGGTTTGGGAGGAAATGAAGCGAGATAGGGTTGAGGCTGATGCTATGGCATATGCAACTCTGGTTACAGGGTTGTGTAAGGGTGGCAGGGTGGAGAAAGGGTACGAATTGTTTAGAGAGATGAAGGCGAAGGGTTTCTTGATTGATAGAGCGATATACGGGGTGTTGATTGAGGGGTTTGTGGCGGACAGGAAGGTTGGGGTGGCTTGTGATTTGTTGAAGGATTTGGTGGACTCGGGCTATAGGCCAGACTTGGGGATAAATAATTCTCTTATCGAGGGTTTATGTAATGTGAAGCGGGTTGATAAGGCTTATAAAATTTTCCGAGTTACTGTTCAAGAGGGTCTTCAGCCAGATTTCGCTACAGTGAATCCCATTTTGGTGTTCTATGCGGAGACAAGTAAAGTGGATAAGTTCTGCGAGATGCTTGCACAGATGGAGAAATGTGGTTTTCCTGTCATTGACGATCTTTTGAAATTCTTCTCCTTTATTGTAGGAAAGGAGGACAGAGTAACAATGGGTTTGGAAGTGTTTGAAGAGTTAAAAGTCAAAGGTTATTATAGTTTAGGAATCTACAATATCTTTATGGAGGCCCTCCACAAATCTGGGAAAGTGAAAAAAGCATTGTCTCTCTTTAATGAAACGAAGGATGTGGGTTTGCAGCCCGACTCCTCTACTTACAGCATTGCCATAATGTGTTTTGTTGAAGATGGGGACATCCATGAGGCTTGTGCCTGTTATAATAAAATAATTGAGATGTCTTGTGTTCCTTTGATTGCTGCCTACCGTTCGCTTGCTAGAGGGCTTTGTAAAATTGGAGAGATTGACGCCGTTATGCTGTTACTTCGTGACTGCTTAGCCAGCGTGACAAGTGGACCCTTGGAATTCAAGTATTCTCTTACCATTCTCCATGCATGTAAATCAAATAATGCTGAGAAGGTGGTTGAGGTGCTAAATGAGATGATACAGCAGGGTTGTCCTCCAGATGATGTTGTATACTCTGCTATAATCTCTGGCATGTGTAAGCATGGCACAATAGAGGAGGCAAGAAAAATATTTTCAAATTTGAAAGAGCACAAAATTTTAACAGAAGCCAACATGATTGTGTATGATGTATTAATTGAACACATGAAGAAGAAGACGGCAGATCTGGTGGTGTCTGGTTTGAAGTTTTTTGGATTAGAAAACAAATTGAAAGCAAAGGGTTGTAAGCTGCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3 PPR_long

Protein Analysis

838

Amino Acids

94.97

Weight (kDa)

9.04

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	272 - 408	3e-08	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	346 - 470	7.7e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	375 - 420	2.3e-11	PPR repeat family
PPR_1	PF12854	375 - 402	4e-06	PPR repeat
PPR_long	PF17177	391 - 483	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	408 - 457	2.8e-11	PPR repeat family
PPR_long	PF17177	424 - 577	1.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	441 - 472	1.6e-07	PPR repeat
PPR_2	PF13041	444 - 490	1.9e-07	PPR repeat family
PPR	PF01535	448 - 476	5.5e-06	PPR repeat
PPR_2	PF13041	621 - 664	3.8e-10	PPR repeat family
PPR_2	PF13041	732 - 772	7.2e-09	PPR repeat family
PPR_1	PF12854	755 - 784	5.4e-08	PPR repeat
PPR_2	PF13041	758 - 805	3.7e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20740
fragaria_vesca	FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120 FvH4_7g02120
malus_domestica	MD02G1297100.v1.1 MD07G1026900.v1.1
prunus_persica	Prupe.2G027000_v2.0.a1 Prupe.2G027000_v2.0.a1
pyrus_communis	pycom02g25030 pycom07g02030 pycom07g02070
rosa_chinensis	RchiOBHm_Chr1g0319391
rosa_laevigata	RLG00000030490
rosa_multiflora	Rmu_sc0005870.1_g000005
rosa_roxburghii	Rroxscaffold_4G00328510
rosa_rugosa	Rorug01G0027200
rosa_samantha	Rh1AG039500 Rh1BG036300 Rh1CG038400 Rh1DG031400
rosa_wichuraiana	Rw1G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1605, 2031
AarI	CACCTGC	1 cut(s)	552
Acc16I	TGCGCA	1 cut(s)	177
Acc36I	ACCTGC	2 cut(s)	552, 770
AccI	GTMKAC	1 cut(s)	2286
AccII	CGCG	1 cut(s)	444
AccIII	TCCGGA	1 cut(s)	687
AclWI	GGATC	1 cut(s)	1043
AcoI	YGGCCR	3 cut(s)	149, 297, 406
AcsI	RAATTY	8 cut(s)	389, 998, 1210, 1608, 1766, 2174, 2353, 2370
AcuI	CTGAAG	1 cut(s)	1622
AcyI	GRCGYC	1 cut(s)	2118
AfaI	GTAC	3 cut(s)	818, 1028, 1394
AfiI	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
AflIII	ACRYGT	1 cut(s)	1227
AgeI	ACCGGT	2 cut(s)	843, 852
AjiI	CACGTC	1 cut(s)	1228
AjnI	CCWGG	1 cut(s)	1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	1652, 1684
AluBI	AGCT	7 cut(s)	102, 129, 216, 685, 883, 1189, 2503
AluI	AGCT	7 cut(s)	102, 129, 216, 685, 883, 1189, 2503
Alw21I	GWGCWC	4 cut(s)	218, 687, 732, 2367
Alw26I	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
AlwI	GGATC	1 cut(s)	1043
Ama87I	CYCGRG	2 cut(s)	878, 1525
Aor13HI	TCCGGA	1 cut(s)	687
AoxI	GGCC	9 cut(s)	149, 297, 406, 448, 664, 756, 1074, 1535, 1881
ApaI	GGGCCC	1 cut(s)	668
ApeKI	GCWGC	6 cut(s)	129, 347, 1186, 1951, 2069, 2503
ApoI	RAATTY	8 cut(s)	389, 998, 1210, 1608, 1766, 2174, 2353, 2370
AseI	ATTAAT	1 cut(s)	2408
AsiGI	ACCGGT	2 cut(s)	843, 852
Asp700I	GAANNNNTTC	2 cut(s)	1424, 1769
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	2 cut(s)	72, 96
AvaI	CYCGRG	2 cut(s)	878, 1525
AvaII	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
BaeGI	GKGCMC	1 cut(s)	668
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	3 cut(s)	218, 668, 687
BbsI	GAAGAC	3 cut(s)	233, 1628, 2435
Bbv12I	GWGCWC	4 cut(s)	218, 687, 732, 2367
BbvI	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
BccI	CCATC	6 cut(s)	623, 880, 1100, 1274, 1720, 1994
BceAI	ACGGC	6 cut(s)	164, 421, 544, 1257, 2105, 2448
BcgI	CGANNNNNNTGC	2 cut(s)	1700, 1734
BciT130I	CCWGG	1 cut(s)	1015
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
BfaI	CTAG	1 cut(s)	2088
BfmI	CTRYAG	4 cut(s)	181, 238, 1531, 1653
BfuAI	ACCTGC	2 cut(s)	552, 770
BglII	AGATCT	2 cut(s)	396, 2437
BisI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
BlpI	GCTNAGC	1 cut(s)	2146
BlsI	GCNGC	9 cut(s)	131, 349, 446, 449, 482, 1188, 1953, 2071, 2505
Bme1390I	CCNGG	2 cut(s)	701, 1015
Bme18I	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
BmeT110I	CYCGRG	2 cut(s)	878, 1525
BmgBI	CACGTC	1 cut(s)	1228
BmgT120I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
BmiI	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
BmrFI	CCNGG	2 cut(s)	701, 1015
BmrI	ACTGGG	2 cut(s)	670, 784
BmsI	GCATC	5 cut(s)	625, 940, 1033, 1321, 1704
BmuI	ACTGGG	2 cut(s)	670, 784
BpiI	GAAGAC	3 cut(s)	233, 1628, 2435
BpmI	CTGGAG	1 cut(s)	2256
Bpu1102I	GCTNAGC	1 cut(s)	2146
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	701
BsaBI	GATNNNNATC	2 cut(s)	252, 932
BsaHI	GRCGYC	1 cut(s)	2118
BsaI	GGTCTC	1 cut(s)	968
BsaJI	CCNNGG	7 cut(s)	403, 442, 723, 825, 1013, 1014, 2169
BsaWI	WCCGGW	7 cut(s)	13, 651, 687, 843, 852, 858, 1222
BsaXI	ACNNNNNCTCC	2 cut(s)	1376, 1406
Bsc4I	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
Bse118I	RCCGGY	3 cut(s)	292, 843, 852
Bse1I	ACTGG	3 cut(s)	665, 671, 779
Bse3DI	GCAATG	2 cut(s)	1251, 1974
Bse8I	GATNNNNATC	2 cut(s)	252, 932
BseAI	TCCGGA	1 cut(s)	687
BseBI	CCWGG	1 cut(s)	1015
BseDI	CCNNGG	7 cut(s)	403, 442, 723, 825, 1013, 1014, 2169
BseGI	GGATG	3 cut(s)	1048, 1945, 2007
BseJI	GATNNNNATC	2 cut(s)	252, 932
BseLI	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
BseMI	GCAATG	2 cut(s)	1251, 1974
BseMII	CTCAG	6 cut(s)	182, 231, 386, 485, 979, 2214
BseNI	ACTGG	3 cut(s)	665, 671, 779
BseRI	GAGGAG	5 cut(s)	173, 587, 1133, 1951, 2345
BseSI	GKGCMC	1 cut(s)	668
BseXI	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
BseYI	CCCAGC	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	444
Bsh1285I	CGRYCG	2 cut(s)	463, 863
BshFI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
BshTI	ACCGGT	2 cut(s)	843, 852
BsiEI	CGRYCG	2 cut(s)	463, 863
BsiHKAI	GWGCWC	4 cut(s)	218, 687, 732, 2367
BsiHKCI	CYCGRG	2 cut(s)	878, 1525
BslFI	GGGAC	5 cut(s)	156, 361, 548, 860, 2018
BslI	CCNNNNNNNGG	3 cut(s)	754, 865, 1544
BsmAI	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
BsmBI	CGTCTC	1 cut(s)	682
BsmFI	GGGAC	5 cut(s)	156, 361, 548, 860, 2018
BsmI	GAATGC	1 cut(s)	945
BsnI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
Bso31I	GGTCTC	1 cut(s)	968
BsoBI	CYCGRG	2 cut(s)	878, 1525
Bsp120I	GGGCCC	1 cut(s)	664
Bsp1286I	GDGCHC	5 cut(s)	218, 668, 687, 732, 2367
Bsp13I	TCCGGA	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	1026
Bsp143I	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
Bsp1720I	GCTNAGC	1 cut(s)	2146
BspANI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
BspCNI	CTCAG	6 cut(s)	183, 230, 385, 484, 978, 2215
BspEI	TCCGGA	1 cut(s)	687
BspFNI	CGCG	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	1134
BspLI	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
BspMAI	CTGCAG	2 cut(s)	185, 242
BspMI	ACCTGC	2 cut(s)	552, 770
BspPI	GGATC	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	968
BsrDI	GCAATG	2 cut(s)	1251, 1974
BsrFI	RCCGGY	3 cut(s)	292, 843, 852
BsrGI	TGTACA	1 cut(s)	1026
BsrI	ACTGG	3 cut(s)	665, 671, 779
BssAI	RCCGGY	3 cut(s)	292, 843, 852
BssECI	CCNNGG	7 cut(s)	403, 442, 723, 825, 1013, 1014, 2169
BssMI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
BssNAI	GTATAC	1 cut(s)	2287
BssNI	GRCGYC	1 cut(s)	2118
BssT1I	CCWWGG	2 cut(s)	825, 2169
Bst1107I	GTATAC	1 cut(s)	2287
Bst2UI	CCWGG	1 cut(s)	1015
Bst4CI	ACNGT	7 cut(s)	439, 464, 499, 921, 1624, 1657, 2078
Bst6I	CTCTTC	2 cut(s)	458, 1821
BstACI	GRCGYC	1 cut(s)	2118
BstAUI	TGTACA	1 cut(s)	1026
BstC8I	GCNNGC	7 cut(s)	134, 416, 622, 668, 1719, 2085, 2152
BstDEI	CTNAG	8 cut(s)	191, 217, 372, 471, 965, 1276, 2146, 2223
BstDSI	CCRYGG	2 cut(s)	403, 442
BstF5I	GGATG	3 cut(s)	1048, 1945, 2007
BstFNI	CGCG	1 cut(s)	444
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	6 cut(s)	399, 523, 1038, 1140, 1759, 2440
BstMAI	GTCTC	5 cut(s)	472, 682, 968, 1679, 1923
BstMBI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
BstMCI	CGRYCG	2 cut(s)	463, 863
BstMWI	GCNNNNNNNGC	2 cut(s)	1241, 2151
BstNI	CCWGG	1 cut(s)	1015
BstNSI	RCATGY	2 cut(s)	2208, 2311
BstSCI	CCNGG	2 cut(s)	699, 1013
BstSFI	CTRYAG	4 cut(s)	181, 238, 1531, 1653
BstSLI	GKGCMC	1 cut(s)	668
BstUI	CGCG	1 cut(s)	444
BstV1I	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
BstV2I	GAAGAC	3 cut(s)	233, 1628, 2435
BstX2I	RGATCY	2 cut(s)	396, 2437
BstXI	CCANNNNNNTGG	1 cut(s)	1895
BstYI	RGATCY	2 cut(s)	396, 2437
BstZ17I	GTATAC	1 cut(s)	2287
BsuRI	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
BtgI	CCRYGG	2 cut(s)	403, 442
BtgZI	GCGATG	2 cut(s)	555, 601
BtrI	CACGTC	1 cut(s)	1228
BtsCI	GGATG	3 cut(s)	1048, 1945, 2007
BtsI	GCAGTG	2 cut(s)	178, 247
BtsIMutI	CAGTG	6 cut(s)	120, 178, 247, 658, 772, 1662
BveI	ACCTGC	2 cut(s)	552, 770
Cac8I	GCNNGC	7 cut(s)	134, 416, 622, 668, 1719, 2085, 2152
CciI	TCATGA	1 cut(s)	1134
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	3 cut(s)	292, 843, 852
Cfr13I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
Cfr42I	CCGCGG	1 cut(s)	445
CseI	GACGC	3 cut(s)	15, 241, 2126
Csp6I	GTAC	3 cut(s)	817, 1027, 1393
CspAI	ACCGGT	2 cut(s)	843, 852
CspCI	CAANNNNNGTGG	2 cut(s)	1677, 1712
CviAII	CATG	9 cut(s)	1039, 1135, 2012, 2201, 2205, 2308, 2318, 2389, 2419
CviQI	GTAC	3 cut(s)	817, 1027, 1393
DdeI	CTNAG	8 cut(s)	191, 217, 372, 471, 965, 1276, 2146, 2223
DpnI	GATC	6 cut(s)	398, 522, 1037, 1139, 1758, 2439
DpnII	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
DraI	TTTAAA	1 cut(s)	280
EaeI	YGGCCR	3 cut(s)	149, 297, 406
Eam1104I	CTCTTC	2 cut(s)	458, 1821
EarI	CTCTTC	2 cut(s)	458, 1821
EciI	GGCGGA	3 cut(s)	686, 881, 1490
Ecl136II	GAGCTC	2 cut(s)	216, 685
Eco130I	CCWWGG	2 cut(s)	825, 2169
Eco24I	GRGCYC	3 cut(s)	218, 668, 687
Eco31I	GGTCTC	1 cut(s)	968
Eco47I	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
Eco53kI	GAGCTC	2 cut(s)	216, 685
Eco57I	CTGAAG	1 cut(s)	1622
Eco88I	CYCGRG	2 cut(s)	878, 1525
EcoICRI	GAGCTC	2 cut(s)	216, 685
EcoO109I	RGGNCCY	3 cut(s)	535, 664, 1882
EcoRI	GAATTC	1 cut(s)	2174
EcoRII	CCWGG	1 cut(s)	1013
EcoT14I	CCWWGG	2 cut(s)	825, 2169
EcoT22I	ATGCAT	1 cut(s)	2206
EcoT38I	GRGCYC	3 cut(s)	218, 668, 687
ErhI	CCWWGG	2 cut(s)	825, 2169
Esp3I	CGTCTC	1 cut(s)	682
FaeI	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
FalI	AAGNNNNNCTT	4 cut(s)	1412, 1444, 1620, 1652
FaqI	GGGAC	5 cut(s)	156, 361, 548, 860, 2018
FatI	CATG	9 cut(s)	1038, 1134, 2011, 2200, 2204, 2307, 2317, 2388, 2418
FauI	CCCGC	3 cut(s)	629, 675, 1581
FauNDI	CATATG	1 cut(s)	1342
FblI	GTMKAC	1 cut(s)	2286
Fnu4HI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
FokI	GGATG	3 cut(s)	1055, 1952, 1994
FriOI	GRGCYC	3 cut(s)	218, 668, 687
Fsp4HI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
FspBI	CTAG	1 cut(s)	2088
FspI	TGCGCA	1 cut(s)	177
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
GsaI	CCCAGC	1 cut(s)	514
GsuI	CTGGAG	1 cut(s)	2256
HaeIII	GGCC	9 cut(s)	151, 299, 408, 450, 666, 758, 1076, 1537, 1883
HgaI	GACGC	3 cut(s)	15, 241, 2126
HhaI	GCGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	2118
Hin1II	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	7 cut(s)	34, 890, 928, 1523, 1660, 1860, 1958
HphI	GGTGA	2 cut(s)	72, 96
Hpy166II	GTNNAC	6 cut(s)	564, 1087, 1220, 1522, 2165, 2287
Hpy188I	TCNGA	8 cut(s)	220, 460, 682, 840, 938, 949, 1267, 1616
Hpy8I	GTNNAC	6 cut(s)	564, 1087, 1220, 1522, 2165, 2287
Hpy99I	CGWCG	4 cut(s)	150, 235, 587, 722
HpyAV	CCTTC	7 cut(s)	526, 1408, 1414, 1477, 1504, 1930, 2221
HpyCH4III	ACNGT	7 cut(s)	439, 464, 499, 921, 1624, 1657, 2078
HpyCH4IV	ACGT	1 cut(s)	1227
HpyCH4V	TGCA	9 cut(s)	183, 240, 943, 1186, 1235, 1346, 1721, 1951, 2204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1241, 2151
HpyF3I	CTNAG	8 cut(s)	191, 217, 372, 471, 965, 1276, 2146, 2223
HpySE526I	ACGT	1 cut(s)	1227
Hsp92I	GRCGYC	1 cut(s)	2118
Hsp92II	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
HspAI	GCGC	1 cut(s)	176
KflI	GGGWCCC	1 cut(s)	535
Kpn2I	TCCGGA	1 cut(s)	687
KspI	CCGCGG	1 cut(s)	445
Kzo9I	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
LmnI	GCTCC	2 cut(s)	682, 690
Lsp1109I	GCAGC	6 cut(s)	116, 359, 1198, 1963, 2056, 2490
LweI	GCATC	5 cut(s)	625, 940, 1033, 1321, 1704
MaeI	CTAG	1 cut(s)	2088
MaeII	ACGT	1 cut(s)	1227
MalI	GATC	6 cut(s)	398, 522, 1037, 1139, 1758, 2439
MboI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
MflI	RGATCY	2 cut(s)	396, 2437
MhlI	GDGCHC	5 cut(s)	218, 668, 687, 732, 2367
MlsI	TGGCCA	1 cut(s)	299
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	3 cut(s)	884, 1517, 1952
MmeI	TCCRAC	2 cut(s)	483, 873
Mox20I	TGGCCA	1 cut(s)	299
Mph1103I	ATGCAT	1 cut(s)	2206
MroI	TCCGGA	1 cut(s)	687
MroXI	GAANNNNTTC	2 cut(s)	1424, 1769
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
MslI	CAYNNNNRTG	6 cut(s)	807, 938, 948, 1244, 1670, 2393
Msp20I	TGGCCA	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	701, 1015
Mva1269I	GAATGC	1 cut(s)	945
MvaI	CCWGG	1 cut(s)	1015
MvnI	CGCG	1 cut(s)	444
MwoI	GCNNNNNNNGC	2 cut(s)	1241, 2151
NciI	CCSGG	1 cut(s)	701
NdeI	CATATG	1 cut(s)	1342
NdeII	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
NlaIII	CATG	9 cut(s)	1042, 1138, 2015, 2204, 2208, 2311, 2321, 2392, 2422
NlaIV	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
NmeAIII	GCCGAG	3 cut(s)	501, 748, 933
NmuCI	GTSAC	4 cut(s)	306, 703, 2138, 2155
NsbI	TGCGCA	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	2206
NspI	RCATGY	2 cut(s)	2208, 2311
PagI	TCATGA	1 cut(s)	1134
PaqCI	CACCTGC	1 cut(s)	552
PasI	CCCWGGG	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	945
PdmI	GAANNNNTTC	2 cut(s)	1424, 1769
PfeI	GAWTC	4 cut(s)	34, 928, 1660, 1860
PflFI	GACNNNGTC	3 cut(s)	464, 716, 872
PinAI	ACCGGT	2 cut(s)	843, 852
PkrI	GCNGC	9 cut(s)	131, 349, 446, 449, 482, 1188, 1953, 2071, 2505
PleI	GAGTC	3 cut(s)	884, 1517, 1952
PpsI	GAGTC	3 cut(s)	884, 1517, 1952
PpuMI	RGGWCCY	1 cut(s)	535
PshBI	ATTAAT	1 cut(s)	2408
PsiI	TTATAA	2 cut(s)	1605, 2031
Psp124BI	GAGCTC	2 cut(s)	218, 687
Psp5II	RGGWCCY	1 cut(s)	535
Psp6I	CCWGG	1 cut(s)	1013
PspFI	CCCAGC	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	1013
PspN4I	GGNNCC	7 cut(s)	536, 537, 656, 665, 666, 857, 2167
PspOMI	GGGCCC	1 cut(s)	664
PspPI	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
PspPPI	RGGWCCY	1 cut(s)	535
PstI	CTGCAG	2 cut(s)	185, 242
PsuI	RGATCY	2 cut(s)	396, 2437
PsyI	GACNNNGTC	3 cut(s)	464, 716, 872
RsaI	GTAC	3 cut(s)	818, 1028, 1394
RsaNI	GTAC	3 cut(s)	817, 1027, 1393
RseI	CAYNNNNRTG	6 cut(s)	807, 938, 948, 1244, 1670, 2393
SacI	GAGCTC	2 cut(s)	218, 687
SacII	CCGCGG	1 cut(s)	445
SaqAI	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
SatI	GCNGC	9 cut(s)	130, 348, 445, 448, 481, 1187, 1952, 2070, 2504
Sau3AI	GATC	6 cut(s)	396, 520, 1035, 1137, 1756, 2437
Sau96I	GGNCC	9 cut(s)	535, 664, 665, 712, 736, 846, 868, 1882, 2165
SchI	GAGTC	3 cut(s)	884, 1517, 1952
ScrFI	CCNGG	2 cut(s)	701, 1015
SduI	GDGCHC	5 cut(s)	218, 668, 687, 732, 2367
SfaNI	GCATC	5 cut(s)	625, 940, 1033, 1321, 1704
SfcI	CTRYAG	4 cut(s)	181, 238, 1531, 1653
Sfr303I	CCGCGG	1 cut(s)	445
SgrBI	CCGCGG	1 cut(s)	445
SinI	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
SmiMI	CAYNNNNRTG	6 cut(s)	807, 938, 948, 1244, 1670, 2393
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
SspI	AATATT	1 cut(s)	2346
SspMI	CTAG	1 cut(s)	2088
SstI	GAGCTC	2 cut(s)	218, 687
StyD4I	CCNGG	2 cut(s)	699, 1013
StyI	CCWWGG	2 cut(s)	825, 2169
TaaI	ACNGT	7 cut(s)	439, 464, 499, 921, 1624, 1657, 2078
TaiI	ACGT	1 cut(s)	1230
TaqI	TCGA	4 cut(s)	19, 519, 633, 1566
TatI	WGTACW	1 cut(s)	1026
TauI	GCSGC	3 cut(s)	447, 450, 483
TfiI	GAWTC	4 cut(s)	34, 928, 1660, 1860
Tru1I	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
Tru9I	TTAA	8 cut(s)	279, 360, 1008, 1251, 1832, 1926, 2375, 2408
TscAI	CASTG	6 cut(s)	120, 185, 247, 665, 779, 1662
TseFI	GTSAC	4 cut(s)	306, 703, 2138, 2155
TseI	GCWGC	6 cut(s)	129, 347, 1186, 1951, 2069, 2503
Tsp45I	GTSAC	4 cut(s)	306, 703, 2138, 2155
TspRI	CASTG	6 cut(s)	120, 185, 247, 665, 779, 1662
Tth111I	GACNNNGTC	3 cut(s)	464, 716, 872
VpaK11BI	GGWCC	6 cut(s)	535, 712, 736, 846, 868, 2165
VspI	ATTAAT	1 cut(s)	2408
XapI	RAATTY	8 cut(s)	389, 998, 1210, 1608, 1766, 2174, 2353, 2370
XceI	RCATGY	2 cut(s)	2208, 2311
XmiI	GTMKAC	1 cut(s)	2286
XmnI	GAANNNNTTC	2 cut(s)	1424, 1769
XspI	CTAG	1 cut(s)	2088
Zsp2I	ATGCAT	1 cut(s)	2206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.