pycom07g02990

Dr1-associated corepressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011860
Physical Location & Seq
Forward (+)
2478039 .. 2482284
4246 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 930 bp
ATGAGGAAGAAGCTCGATACCCGTTTTCCTGCTGCCCGGATTAAAAAGATTATGCAAGCTGATGAAGATGTTGGGAAGATAGCATTAGCAGTGCCTGTTTTAGTGTCTAAAGCGTTGGAGCTATTTTTGCAAGACCTTTGTGACCGTACCTATGAGATAACCCTGCAAAGAGGAGCTAAAACCATGAATGCAGTGCATCTAAAGCACTGTGTACAGAGCTATAATGTGTTTGATTTTCTGAGGGACATCGTCAGCAGAGTTCCTGACTATACTCATGGTCATTCTGATGCTGCTGCCGATGACCGAACCCTTTCAAAAAGAAGAAAACCACCAGGTGATGAAGGCATTGACAGTGATGAAGAATTGAAGAGGAGCAAGATGCTTGAGATAAAAAATAGCAGTAGCAGCGGCAGAGGAAGAGGTCGGGGTCGGGGTCGAGGCCGTGGACGTGGTCGGACCACTGAAAGAGACACTTCGCACCATGAGACTGAATCTGATCCGTGCACATCTCTTCGGCAGATCACTGAACCTAATCCTAACCCTGGAATGGTGGTGGATGATGTTTCCGAGTCAAAGGATATATTGAAAGAAAATGTCATTGCCCCTGATGAATCTGATCCAGCAGTTAGAAACTTTGATCTGAATGCTGATGTTAATGATACTGATGACACAAAAGCTGCCGCAACAGCAGCCCAAGCTTCTGCAACAGCAGTCCAACAGTCCAAGCTTCCTCAACAGCAGCCCAAGCTGCCCCAACAGCAGCCCCAGCTGCCCCAACGGCATCCCAAGCTGCCCCAACGGCAGCTCAAGCCTCATCAGCTGGACCTATCTCCGAGCCTAAACATGAAGAATATCCTGGGTGGTCTCTCTCTGATGTGGATGGAATGGCCATTGATCCTATTCAACTTGCAAATCTCAGCAGAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBFD_NFYB_HMF

Protein Analysis

310

Amino Acids

34.48

Weight (kDa)

8.35

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 8 - 71 2.6e-19 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011860)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12480
fragaria_vesca FvH4_7g04210
malus_domestica MD02G1273400.v1.1 MD07G1042300.v1.1
prunus_persica Prupe.2G047600_v2.0.a1
pyrus_communis pycom02g23430 pycom07g02990
rosa_chinensis RchiOBHm_Chr1g0328631 RchiOBHm_Chr1g0328761
rosa_laevigata RLG00000029919
rosa_roxburghii Rroxscaffold_4G00321380
rosa_rugosa Rorug01G0075500
rosa_samantha Rh1AG094500 Rh1BG075000 Rh1CG090700 Rh1CG091000 Rh1DG097100 Rh1DG097700
rosa_wichuraiana Rw1G007370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 408, 681
AclWI GGATC 3 cut(s) 491, 611, 889
AcoI YGGCCR 1 cut(s) 887
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 148, 213
AfiI CCNNNNNNNGG 2 cut(s) 542, 547
AgsI TTSAA 4 cut(s) 315, 367, 586, 904
AjiI CACGTC 1 cut(s) 449
AjnI CCWGG 3 cut(s) 331, 541, 855
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 3 cut(s) 462, 479, 869
Alw44I GTGCAC 1 cut(s) 502
AlwI GGATC 3 cut(s) 491, 611, 889
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 2 cut(s) 439, 887
ApaLI GTGCAC 1 cut(s) 502
Asp700I GAANNNNTTC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 456, 823
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 2 cut(s) 456, 823
BaeGI GKGCMC 1 cut(s) 506
BalI TGGCCA 1 cut(s) 889
Bbv12I GWGCWC 1 cut(s) 506
BccI CCATC 1 cut(s) 874
BceAI ACGGC 3 cut(s) 426, 794, 815
BciT130I CCWGG 3 cut(s) 333, 543, 857
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 3 cut(s) 462, 479, 869
BfaI CTAG 1 cut(s) 928
BglI GCCNNNNNGGC 2 cut(s) 778, 799
Bme1390I CCNGG 4 cut(s) 37, 333, 543, 857
Bme18I GGWCC 2 cut(s) 456, 823
BmgBI CACGTC 1 cut(s) 449
BmgT120I GGNCC 2 cut(s) 456, 823
BmrFI CCNGG 4 cut(s) 37, 333, 543, 857
BmsI GCATC 4 cut(s) 205, 277, 369, 790
BpuEI CTTGAG 2 cut(s) 404, 791
BpuMI CCSGG 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 869
BsaJI CCNNGG 3 cut(s) 442, 541, 856
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 547
Bse3DI GCAATG 1 cut(s) 597
BseBI CCWGG 3 cut(s) 333, 543, 857
BseDI CCNNGG 3 cut(s) 442, 541, 856
BseGI GGATG 3 cut(s) 562, 781, 885
BseLI CCNNNNNNNGG 2 cut(s) 542, 547
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 2 cut(s) 230, 930
BseRI GAGGAG 2 cut(s) 186, 385
BseSI GKGCMC 1 cut(s) 506
BseYI CCCAGC 1 cut(s) 765
BshFI GGCC 2 cut(s) 441, 889
BsiHKAI GWGCWC 1 cut(s) 506
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 2 cut(s) 542, 547
BsmAI GTCTC 3 cut(s) 462, 479, 869
BsmFI GGGAC 1 cut(s) 257
BsmI GAATGC 2 cut(s) 193, 649
BsnI GGCC 2 cut(s) 441, 889
Bso31I GGTCTC 1 cut(s) 869
Bsp1286I GDGCHC 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 211
Bsp143I GATC 5 cut(s) 496, 519, 616, 637, 894
BspACI CCGC 2 cut(s) 408, 681
BspANI GGCC 2 cut(s) 441, 889
BspCNI CTCAG 2 cut(s) 231, 929
BspPI GGATC 3 cut(s) 491, 611, 889
BspTNI GGTCTC 1 cut(s) 869
BsrDI GCAATG 1 cut(s) 597
BsrGI TGTACA 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 442, 541, 856
BssMI GATC 5 cut(s) 496, 519, 616, 637, 894
Bst2UI CCWGG 3 cut(s) 333, 543, 857
Bst4CI ACNGT 4 cut(s) 146, 209, 353, 720
Bst6I CTCTTC 3 cut(s) 362, 412, 516
BstAUI TGTACA 1 cut(s) 211
BstC8I GCNNGC 1 cut(s) 57
BstDEI CTNAG 2 cut(s) 239, 916
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 3 cut(s) 562, 781, 885
BstKTI GATC 5 cut(s) 499, 522, 619, 640, 897
BstMAI GTCTC 3 cut(s) 462, 479, 869
BstMBI GATC 5 cut(s) 496, 519, 616, 637, 894
BstNI CCWGG 3 cut(s) 333, 543, 857
BstSCI CCNGG 4 cut(s) 35, 331, 541, 855
BstSLI GKGCMC 1 cut(s) 506
BsuRI GGCC 2 cut(s) 441, 889
BtgI CCRYGG 1 cut(s) 442
BtrI CACGTC 1 cut(s) 449
BtsCI GGATG 3 cut(s) 562, 781, 885
BtsI GCAGTG 2 cut(s) 96, 198
BtsIMutI CAGTG 6 cut(s) 96, 198, 205, 358, 459, 522
Cac8I GCNNGC 1 cut(s) 57
CaiI CAGNNNCTG 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 456, 823
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 147, 212
CviAII CATG 4 cut(s) 184, 275, 482, 844
CviQI GTAC 2 cut(s) 147, 212
DdeI CTNAG 2 cut(s) 239, 916
DpnI GATC 5 cut(s) 498, 521, 618, 639, 896
DpnII GATC 5 cut(s) 496, 519, 616, 637, 894
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 1 cut(s) 887
Eam1104I CTCTTC 3 cut(s) 362, 412, 516
EarI CTCTTC 3 cut(s) 362, 412, 516
Eco31I GGTCTC 1 cut(s) 869
Eco47I GGWCC 2 cut(s) 456, 823
EcoRII CCWGG 3 cut(s) 331, 541, 855
FaeI CATG 4 cut(s) 187, 278, 485, 847
FaiI YATR 9 cut(s) 53, 153, 185, 222, 270, 276, 483, 581, 845
FalI AAGNNNNNCTT 2 cut(s) 457, 489
FaqI GGGAC 1 cut(s) 257
FatI CATG 4 cut(s) 183, 274, 481, 843
FokI GGATG 3 cut(s) 569, 768, 892
FspBI CTAG 1 cut(s) 928
GsaI CCCAGC 1 cut(s) 769
HaeIII GGCC 2 cut(s) 441, 889
HapII CCGG 1 cut(s) 37
Hin1II CATG 4 cut(s) 187, 278, 485, 847
HindIII AAGCTT 2 cut(s) 696, 725
HinfI GANTC 3 cut(s) 491, 569, 611
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 212, 446, 504
Hpy188I TCNGA 9 cut(s) 240, 286, 456, 496, 568, 616, 642, 834, 873
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 3 cut(s) 212, 446, 504
HpyAV CCTTC 2 cut(s) 335, 917
HpyCH4III ACNGT 4 cut(s) 146, 209, 353, 720
HpyCH4IV ACGT 1 cut(s) 448
HpyCH4V TGCA 8 cut(s) 55, 130, 166, 191, 196, 504, 704, 910
HpyF3I CTNAG 2 cut(s) 239, 916
HpySE526I ACGT 1 cut(s) 448
Hsp92II CATG 4 cut(s) 187, 278, 485, 847
Kzo9I GATC 5 cut(s) 496, 519, 616, 637, 894
LmnI GCTCC 3 cut(s) 118, 173, 372
LweI GCATC 4 cut(s) 205, 277, 369, 790
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 928
MaeII ACGT 1 cut(s) 448
MaeIII GTNAC 1 cut(s) 140
MalI GATC 5 cut(s) 498, 521, 618, 639, 896
MboI GATC 5 cut(s) 496, 519, 616, 637, 894
MboII GAAGA 9 cut(s) 19, 77, 88, 333, 371, 379, 429, 503, 859
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 889
MluCI AATT 1 cut(s) 362
MluNI TGGCCA 1 cut(s) 889
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 3 cut(s) 96, 434, 739
MnlI CCTC 8 cut(s) 164, 234, 363, 407, 413, 431, 741, 822
Mox20I TGGCCA 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 310
MscI TGGCCA 1 cut(s) 889
MseI TTAA 2 cut(s) 42, 654
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 889
MspA1I CMGCKG 3 cut(s) 408, 769, 820
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 4 cut(s) 37, 333, 543, 857
Mva1269I GAATGC 2 cut(s) 193, 649
MvaI CCWGG 3 cut(s) 333, 543, 857
NciI CCSGG 1 cut(s) 37
NdeII GATC 5 cut(s) 496, 519, 616, 637, 894
NlaIII CATG 4 cut(s) 187, 278, 485, 847
NmuCI GTSAC 1 cut(s) 140
PctI GAATGC 2 cut(s) 193, 649
PdmI GAANNNNTTC 1 cut(s) 310
PfeI GAWTC 2 cut(s) 491, 611
PflFI GACNNNGTC 2 cut(s) 248, 450
PleI GAGTC 1 cut(s) 577
PpsI GAGTC 1 cut(s) 577
Psp6I CCWGG 3 cut(s) 331, 541, 855
PspFI CCCAGC 1 cut(s) 765
PspGI CCWGG 3 cut(s) 331, 541, 855
PspPI GGNCC 2 cut(s) 456, 823
PstNI CAGNNNCTG 1 cut(s) 95
PsyI GACNNNGTC 2 cut(s) 248, 450
PvuII CAGCTG 2 cut(s) 769, 820
RsaI GTAC 2 cut(s) 148, 213
RsaNI GTAC 2 cut(s) 147, 212
RseI CAYNNNNRTG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 42, 654
Sau3AI GATC 5 cut(s) 496, 519, 616, 637, 894
Sau96I GGNCC 2 cut(s) 456, 823
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 4 cut(s) 37, 333, 543, 857
SduI GDGCHC 1 cut(s) 506
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 4 cut(s) 205, 277, 369, 790
SinI GGWCC 2 cut(s) 456, 823
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 2 cut(s) 383, 806
SmoI CTYRAG 2 cut(s) 383, 806
Sse9I AATT 1 cut(s) 362
SsiI CCGC 2 cut(s) 408, 681
SspMI CTAG 1 cut(s) 928
StyD4I CCNGG 4 cut(s) 35, 331, 541, 855
TaaI ACNGT 4 cut(s) 146, 209, 353, 720
TaiI ACGT 1 cut(s) 451
TaqI TCGA 2 cut(s) 15, 436
TaqII GACCGA 1 cut(s) 318
TasI AATT 1 cut(s) 362
TatI WGTACW 1 cut(s) 211
TauI GCSGC 2 cut(s) 411, 683
TfiI GAWTC 2 cut(s) 491, 611
Tru1I TTAA 2 cut(s) 42, 654
Tru9I TTAA 2 cut(s) 42, 654
TscAI CASTG 6 cut(s) 96, 198, 212, 358, 466, 529
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 6 cut(s) 78, 200, 354, 372, 624, 860
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 6 cut(s) 96, 198, 212, 358, 466, 529
Tth111I GACNNNGTC 2 cut(s) 248, 450
VneI GTGCAC 1 cut(s) 502
VpaK11BI GGWCC 2 cut(s) 456, 823
XmnI GAANNNNTTC 1 cut(s) 310
XspI CTAG 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.