Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005156

Physical Location & Seq

Genomic Coordinates Reverse (-)

5060416 .. 5062865

Gene Structure 2450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTACTTTCTTCAATGATCTTCATGTACTTGACTTGGAAGCAATGGAGTGGTCCCAACCACAAATTCAGGGTCGATCTTGTTGCTCCTAGGGCAGGTCATGCTGGTATAACCATTGATGAGAACTGGTATATAGTTGGTGGTGGAGATAACAAAAATGGTTGCCCCGAAACTCTGGTGTTAAATATGTCTAAGCTAGTGTGGTCAGTCTCAACCAGTGTTAAGCAAAGGGATGCACTCGCTAGTGAGGGACTCACTGTCTGCTCGGTGACCATAGATGGAAAGAAGCATTTGGTTGCCTTTGGTGGGTATAATGGGAACTATAGCAATGAGGTTTTTGTAATGATGCCCAAACTGAGGGACTCATCACAACCCAAGATATTCCAGTCACCAGCAGCAGCTGCAGCGGCAGCTTCTGTTACTGCTGCATATGCCTTATCTAAAATAGAAATTTTTGATTCCAAAACAGCAGAGCTGAACTCCAAGGGACCTGAAAACCATCATTATGAACAAGATTTAACGGTTGAGGTAGAGGCCCTTACAGAGGAGAAAAGTATGCTGGAGTTGTCACTTGTGGAAGTCAAGGCAGAAAATTCCAGGATCGGGCAGAATATTGAAGTCAACAGTACTCATGCTGAGTTGTCCAAGGCTCAAATCAGTGAACTGCAAAAGAAATTAGAATTGGTGCAGTCCATTGAGGATGAGGTGCAAGCACTTCGGGGTCAAAAATCTGCATTGGAACGGGATGAGCTCTCCTCATCTGCTCAGAGACAAGGTTCTGGTGGGGTTTGGCGGTGGATTGCTGGGGGTGGTGTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000062 GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006810 GO:0006869 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009753 GO:0010033 GO:0010876 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033218 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0051179 GO:0051234 GO:0071702 GO:0097159 GO:0097367 GO:1901265 GO:1901363 GO:1901567 GO:1901681 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_2 Kelch_3 Kelch_4 Kelch_5 Kelch_6

Protein Analysis

274

Amino Acids

29.82

Weight (kDa)

5.48

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_FBX42	PF13415	7 - 113	2.5e-06	FBX42, beta-propeller domain
Kelch_KLHDC2_KLHL20_DRC7	PF24681	11 - 73	8.9e-06	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_ATRN-LZTR1	PF24981	11 - 123	3.1e-07	Attractin/LZTR1 beta-propeller
ACBP4_C	PF24922	175 - 216	9.2e-07	Acyl-CoA-binding domain-containing protein 4-6, C-terminal
ACBP4_C	PF24922	217 - 256	7.8e-08	Acyl-CoA-binding domain-containing protein 4-6, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04420 AT5G04420 AT5G04420
fragaria_vesca	FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590 FvH4_7g06590
malus_domestica	MD02G1242500.v1.1 MD07G1074000.v1.1
prunus_persica	Prupe.2G091900_v2.0.a1
pyrus_communis	pycom02g20920 pycom07g05810
rosa_chinensis	RchiOBHm_Chr1g0335251
rosa_laevigata	RLG00000029392
rosa_multiflora	Rmu_sc0002714.1_g000005
rosa_roxburghii	Rroxscaffold_3G00240470 Rroxscaffold_4G00316130 Rroxscaffold_4G00316210
rosa_rugosa	Rorug01G0121200 Rorug01G0121300 Rorug01G0121400
rosa_samantha	Rh1AG142800 Rh1BG111400 Rh1CG134600 Rh1DG148400
rosa_wichuraiana	Rw1G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	86
AccI	GTMKAC	1 cut(s)	816
AciI	CCGC	2 cut(s)	407, 793
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	3 cut(s)	65, 450, 592
AfaI	GTAC	2 cut(s)	29, 628
AfiI	CCNNNNNNNGG	5 cut(s)	95, 306, 357, 544, 603
AgsI	TTSAA	2 cut(s)	15, 617
AhdI	GACNNNNNGTC	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	596
AjuI	GAANNNNNNNTTGG	4 cut(s)	50, 82, 665, 697
AluBI	AGCT	5 cut(s)	196, 401, 413, 475, 751
AluI	AGCT	5 cut(s)	196, 401, 413, 475, 751
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	2 cut(s)	214, 763
AlwI	GGATC	1 cut(s)	608
AlwNI	CAGNNNCTG	2 cut(s)	401, 416
AoxI	GGCC	1 cut(s)	534
ApeKI	GCWGC	6 cut(s)	395, 398, 401, 404, 410, 425
ApoI	RAATTY	3 cut(s)	65, 450, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	57, 89
AspA2I	CCTAGG	1 cut(s)	89
AspS9I	GGNCC	3 cut(s)	53, 488, 535
AsuHPI	GGTGA	2 cut(s)	280, 381
AvaII	GGWCC	2 cut(s)	53, 488
AvrII	CCTAGG	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	6 cut(s)	388, 407, 410, 412, 416, 422
BccI	CCATC	2 cut(s)	272, 507
BcgI	CGANNNNNNTGC	4 cut(s)	65, 99, 698, 732
BciT130I	CCWGG	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	214, 763
BfaI	CTAG	3 cut(s)	90, 197, 243
BfmI	CTRYAG	2 cut(s)	322, 402
BfuAI	ACCTGC	1 cut(s)	86
BisI	GCNGC	7 cut(s)	396, 399, 402, 405, 408, 411, 426
BlnI	CCTAGG	1 cut(s)	89
BlsI	GCNGC	7 cut(s)	397, 400, 403, 406, 409, 412, 427
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	1 cut(s)	598
Bme18I	GGWCC	2 cut(s)	53, 488
BmeRI	GACNNNNNGTC	1 cut(s)	257
BmgT120I	GGNCC	3 cut(s)	53, 488, 535
BmiI	GGNNCC	2 cut(s)	55, 489
BmrFI	CCNGG	1 cut(s)	598
BmsI	GCATC	2 cut(s)	223, 336
BplI	GAGNNNNNCTC	4 cut(s)	464, 496, 740, 772
BpmI	CTGGAG	1 cut(s)	581
BsaJI	CCNNGG	3 cut(s)	89, 483, 645
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 306, 357, 544, 603
Bse1I	ACTGG	3 cut(s)	131, 216, 385
Bse3DI	GCAATG	2 cut(s)	50, 334
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	3 cut(s)	89, 483, 645
BseGI	GGATG	3 cut(s)	238, 706, 751
BseLI	CCNNNNNNNGG	5 cut(s)	95, 306, 357, 544, 603
BseMI	GCAATG	2 cut(s)	50, 334
BseMII	CTCAG	3 cut(s)	347, 627, 779
BseNI	ACTGG	3 cut(s)	131, 216, 385
BseRI	GAGGAG	2 cut(s)	560, 745
BseXI	GCAGC	6 cut(s)	388, 407, 410, 412, 416, 422
BseYI	CCCAGC	1 cut(s)	803
BsgI	GTGCAG	1 cut(s)	707
BshFI	GGCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	753
BslFI	GGGAC	4 cut(s)	39, 264, 374, 501
BslI	CCNNNNNNNGG	5 cut(s)	95, 306, 357, 544, 603
BsmAI	GTCTC	2 cut(s)	214, 763
BsmFI	GGGAC	4 cut(s)	39, 264, 374, 501
BsnI	GGCC	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	3 cut(s)	18, 76, 600
BspACI	CCGC	2 cut(s)	407, 793
BspANI	GGCC	1 cut(s)	536
BspCNI	CTCAG	3 cut(s)	348, 628, 778
BspLI	GGNNCC	2 cut(s)	55, 489
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	608
BsrDI	GCAATG	2 cut(s)	50, 334
BsrI	ACTGG	3 cut(s)	131, 216, 385
BssECI	CCNNGG	3 cut(s)	89, 483, 645
BssMI	GATC	3 cut(s)	18, 76, 600
BssT1I	CCWWGG	3 cut(s)	89, 483, 645
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	3 cut(s)	259, 523, 626
BstAPI	GCANNNNNTGC	2 cut(s)	101, 401
BstC8I	GCNNGC	1 cut(s)	711
BstDEI	CTNAG	4 cut(s)	192, 356, 636, 765
BstEII	GGTNACC	1 cut(s)	268
BstENI	CCTNNNNNAGG	2 cut(s)	93, 542
BstF5I	GGATG	3 cut(s)	238, 706, 751
BstKTI	GATC	3 cut(s)	21, 79, 603
BstMAI	GTCTC	2 cut(s)	214, 763
BstMBI	GATC	3 cut(s)	18, 76, 600
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 101, 401, 404, 407, 410, 431
BstNI	CCWGG	1 cut(s)	598
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	596
BstSFI	CTRYAG	2 cut(s)	322, 402
BstV1I	GCAGC	6 cut(s)	388, 407, 410, 412, 416, 422
BsuRI	GGCC	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	238, 706, 751
BtsIMutI	CAGTG	3 cut(s)	223, 255, 664
BveI	ACCTGC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	711
CaiI	CAGNNNCTG	2 cut(s)	401, 416
Cfr13I	GGNCC	3 cut(s)	53, 488, 535
Csp6I	GTAC	2 cut(s)	28, 627
CviAII	CATG	3 cut(s)	25, 101, 632
CviJI	RGCY	7 cut(s)	196, 401, 413, 475, 536, 650, 751
CviKI_1	RGCY	7 cut(s)	196, 401, 413, 475, 536, 650, 751
CviQI	GTAC	2 cut(s)	28, 627
DdeI	CTNAG	4 cut(s)	192, 356, 636, 765
DpnI	GATC	3 cut(s)	20, 78, 602
DpnII	GATC	3 cut(s)	18, 76, 600
DriI	GACNNNNNGTC	1 cut(s)	257
Eam1105I	GACNNNNNGTC	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	751
Eco130I	CCWWGG	3 cut(s)	89, 483, 645
Eco24I	GRGCYC	1 cut(s)	753
Eco47I	GGWCC	2 cut(s)	53, 488
Eco53kI	GAGCTC	1 cut(s)	751
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	751
EcoNI	CCTNNNNNAGG	2 cut(s)	93, 542
EcoO109I	RGGNCCY	2 cut(s)	488, 535
EcoO65I	GGTNACC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	596
EcoT14I	CCWWGG	3 cut(s)	89, 483, 645
EcoT38I	GRGCYC	1 cut(s)	753
ErhI	CCWWGG	3 cut(s)	89, 483, 645
FaeI	CATG	3 cut(s)	28, 104, 635
FaqI	GGGAC	4 cut(s)	39, 264, 374, 501
FatI	CATG	3 cut(s)	24, 100, 631
FauNDI	CATATG	1 cut(s)	430
FblI	GTMKAC	1 cut(s)	816
Fnu4HI	GCNGC	7 cut(s)	396, 399, 402, 405, 408, 411, 426
FokI	GGATG	3 cut(s)	245, 713, 758
FriOI	GRGCYC	1 cut(s)	753
Fsp4HI	GCNGC	7 cut(s)	396, 399, 402, 405, 408, 411, 426
FspBI	CTAG	3 cut(s)	90, 197, 243
GluI	GCNGC	7 cut(s)	396, 399, 402, 405, 408, 411, 426
GsaI	CCCAGC	1 cut(s)	807
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	28, 104, 635
HincII	GTYRAC	2 cut(s)	622, 817
HindII	GTYRAC	2 cut(s)	622, 817
HinfI	GANTC	3 cut(s)	252, 362, 458
HphI	GGTGA	2 cut(s)	280, 381
Hpy166II	GTNNAC	3 cut(s)	622, 662, 817
Hpy188I	TCNGA	1 cut(s)	768
Hpy8I	GTNNAC	3 cut(s)	622, 662, 817
HpyCH4III	ACNGT	3 cut(s)	259, 523, 626
HpyCH4V	TGCA	7 cut(s)	236, 404, 428, 667, 688, 709, 734
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 101, 401, 404, 407, 410, 431
HpyF3I	CTNAG	4 cut(s)	192, 356, 636, 765
Hsp92II	CATG	3 cut(s)	28, 104, 635
Kzo9I	GATC	3 cut(s)	18, 76, 600
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	6 cut(s)	388, 407, 410, 412, 416, 422
LweI	GCATC	2 cut(s)	223, 336
MaeI	CTAG	3 cut(s)	90, 197, 243
MaeIII	GTNAC	4 cut(s)	268, 387, 418, 567
MalI	GATC	3 cut(s)	20, 78, 602
MboI	GATC	3 cut(s)	18, 76, 600
MboII	GAAGA	2 cut(s)	3, 13
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	5 cut(s)	65, 450, 592, 674, 680
MlyI	GAGTC	2 cut(s)	246, 356
MnlI	CCTC	9 cut(s)	241, 325, 351, 520, 526, 538, 691, 697, 766
MseI	TTAA	3 cut(s)	182, 222, 518
MslI	CAYNNNNRTG	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	401, 407
MspR9I	CCNGG	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	598
MwoI	GCNNNNNNNGC	7 cut(s)	92, 101, 401, 404, 407, 410, 431
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	3 cut(s)	18, 76, 600
NlaIII	CATG	3 cut(s)	28, 104, 635
NlaIV	GGNNCC	2 cut(s)	55, 489
NmuCI	GTSAC	3 cut(s)	268, 387, 567
PfeI	GAWTC	1 cut(s)	458
PfoI	TCCNGGA	1 cut(s)	596
PkrI	GCNGC	7 cut(s)	397, 400, 403, 406, 409, 412, 427
PleI	GAGTC	2 cut(s)	246, 356
PpsI	GAGTC	2 cut(s)	246, 356
PpuMI	RGGWCCY	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	753
Psp5II	RGGWCCY	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	596
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	2 cut(s)	55, 489
PspPI	GGNCC	3 cut(s)	53, 488, 535
PspPPI	RGGWCCY	1 cut(s)	488
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	2 cut(s)	401, 416
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	29, 628
RsaNI	GTAC	2 cut(s)	28, 627
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	1 cut(s)	753
SalI	GTCGAC	1 cut(s)	815
SaqAI	TTAA	3 cut(s)	182, 222, 518
SatI	GCNGC	7 cut(s)	396, 399, 402, 405, 408, 411, 426
Sau3AI	GATC	3 cut(s)	18, 76, 600
Sau96I	GGNCC	3 cut(s)	53, 488, 535
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	2 cut(s)	246, 356
ScrFI	CCNGG	1 cut(s)	598
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	2 cut(s)	223, 336
SfcI	CTRYAG	2 cut(s)	322, 402
SinI	GGWCC	2 cut(s)	53, 488
SmiMI	CAYNNNNRTG	1 cut(s)	504
Sse9I	AATT	5 cut(s)	65, 450, 592, 674, 680
SsiI	CCGC	2 cut(s)	407, 793
SspI	AATATT	1 cut(s)	613
SspMI	CTAG	3 cut(s)	90, 197, 243
SstI	GAGCTC	1 cut(s)	753
StyD4I	CCNGG	1 cut(s)	596
StyI	CCWWGG	3 cut(s)	89, 483, 645
TaaI	ACNGT	3 cut(s)	259, 523, 626
TaqI	TCGA	2 cut(s)	75, 816
TasI	AATT	5 cut(s)	65, 450, 592, 674, 680
TatI	WGTACW	2 cut(s)	27, 626
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	182, 222, 518
Tru9I	TTAA	3 cut(s)	182, 222, 518
TscAI	CASTG	3 cut(s)	223, 262, 664
TseFI	GTSAC	3 cut(s)	268, 387, 567
TseI	GCWGC	6 cut(s)	395, 398, 401, 404, 410, 425
Tsp45I	GTSAC	3 cut(s)	268, 387, 567
TspDTI	ATGAA	2 cut(s)	13, 522
TspRI	CASTG	3 cut(s)	223, 262, 664
VpaK11BI	GGWCC	2 cut(s)	53, 488
XagI	CCTNNNNNAGG	2 cut(s)	93, 542
XapI	RAATTY	3 cut(s)	65, 450, 592
XmaJI	CCTAGG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	816
XspI	CTAG	3 cut(s)	90, 197, 243
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.