Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0013938

Physical Location & Seq

Genomic Coordinates Reverse (-)

5435258 .. 5436318

Gene Structure 1061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGCTCTGCAGGAAACCAAAATCCATGGGCAACATATGATACATACAAAGATTGTTCGCAAGGGATTTGCAGCATCTACTGCCCTCAGTGGTGCTATATCGTTGGTCCTCCTCCTGCATTTGATTTCGCCGAAGCCGATGATCAAAACCAACAAGACTCCCCAACAGATCTCTCTCCTCTCATTATAGCAATCATTGGCATCTTTGCTAGTGCCTTCATTCTAGTCACTTACTACACCATCATATCCAGATACTGCCGGCGAAGAGGCGGTGATGGCGCTCGAGACATGGACATGGACAGCTCGAATCCAAACCTAGTTAGTGAATCGATGCAAGGCTCAAATAACGGTCTGGATGAGTCCCTGATCAAGTCCATCACGGTTCACAAGTACAAGAAAGGTGAAAAGCTTGTGGAAGGCACAGATTGCTCGGTTTGCTTAAGCGAGTTTGAAGAAAATGAGAGCCTGAGGCTGTTGCCAAAATGTAACCATGCTTTCCATGTTCGTTGCATTGATACTTGGCTCAAATCTCATTCTAGTTGTCCGATGTGCCGGTCGAACATCGCTGCTCCTGCCATTGCTTTGGTGCCTCATCAACAACAAGCGGTGCCTCCGGTCGATGGAAATCAACAGGAGGAGGTGAACGCGTCCGCTTCGGAATACCAACACAGGACTAATGTAAGTATTTTGGTGGTTCAAGATAATTCGGAAGAGGTTGTTGGTCGGTTGGAAAGTAGAGATCGATCAGTTTCCATTGCTGATGTGTTGCATTTGCATGATGGTGAAGATGATGACGAGGACTTGGAAAATCAGATGGGAAGTGCCCAATTTTCTAGGGAAAATCTTCAATTTTCCATGGAAATTGGATCATCAAAAGGAGTTGATCAAGAACAGAATTCCAAATCCAGTAACAACCCTAGAAGTAGTGGAGTTTTCAGCTTGGTAAAGGGTCCTCTGGTACTGAAGAGATCAACTTCAACAGGGAGATTAGTGTTGTCAAGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009628 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080167 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

336

Amino Acids

36.97

Weight (kDa)

4.89

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	142 - 185	2e-14	Ring finger domain
zf-RING_11	PF17123	142 - 171	1.5e-11	RING-like zinc finger
zf-rbx1	PF12678	143 - 185	1.3e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	143 - 184	9.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	143 - 184	7.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11	PF12861	158 - 188	4.7e-07	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03550 AT5G17600
fragaria_vesca	FvH4_7g07160
malus_domestica	MD02G1239200.v1.1 MD07G1077600.v1.1
prunus_persica	Prupe.2G098800_v2.0.a1
pyrus_communis	pycom02g20470 pycom07g06130
rosa_chinensis	RchiOBHm_Chr1g0337191
rosa_laevigata	RLG00000029301
rosa_multiflora	Rmu_sc0002160.1_g000007
rosa_roxburghii	Rroxscaffold_4G00314890
rosa_rugosa	Rorug01G0132000.1
rosa_samantha	Rh1AG152600 Rh1BG121600 Rh1DG159900
rosa_wichuraiana	Rw1G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	586, 607
AccII	CGCG	1 cut(s)	647
AciI	CCGC	3 cut(s)	270, 605, 651
AclWI	GGATC	1 cut(s)	874
AcsI	RAATTY	1 cut(s)	895
AcuI	CTGAAG	1 cut(s)	983
AfaI	GTAC	2 cut(s)	392, 960
AfiI	CCNNNNNNNGG	1 cut(s)	620
AflII	CTTAAG	1 cut(s)	439
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	4 cut(s)	452, 698, 848, 978
AjuI	GAANNNNNNNTTGG	2 cut(s)	702, 734
AluBI	AGCT	3 cut(s)	303, 409, 939
AluI	AGCT	3 cut(s)	303, 409, 939
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	874
AlwNI	CAGNNNCTG	1 cut(s)	255
Ama87I	CYCGRG	1 cut(s)	282
ApeKI	GCWGC	2 cut(s)	72, 566
ApoI	RAATTY	1 cut(s)	895
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	107, 950
AsuHPI	GGTGA	4 cut(s)	284, 413, 652, 794
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	2 cut(s)	107, 950
AxyI	CCTNAGG	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	826
BanI	GGYRCC	2 cut(s)	586, 607
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	84, 553
BccI	CCATC	6 cut(s)	248, 269, 383, 614, 773, 808
BclI	TGATCA	3 cut(s)	142, 366, 883
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	6 cut(s)	210, 224, 317, 537, 834, 918
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	1 cut(s)	282
BfrI	CTTAAG	1 cut(s)	439
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	2 cut(s)	73, 567
BlsI	GCNGC	2 cut(s)	74, 568
Bme18I	GGWCC	2 cut(s)	107, 950
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	107, 950
BmiI	GGNNCC	3 cut(s)	588, 609, 951
BmsI	GCATC	3 cut(s)	84, 210, 321
Bsa29I	ATCGAT	2 cut(s)	329, 742
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	26, 855
BsaWI	WCCGGW	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse118I	RCCGGY	2 cut(s)	258, 552
Bse1I	ACTGG	1 cut(s)	906
Bse21I	CCTNAGG	1 cut(s)	467
Bse3DI	GCAATG	2 cut(s)	576, 753
Bse8I	GATNNNNATC	1 cut(s)	624
BseCI	ATCGAT	2 cut(s)	329, 742
BseDI	CCNNGG	2 cut(s)	26, 855
BseGI	GGATG	1 cut(s)	361
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	2 cut(s)	576, 753
BseMII	CTCAG	2 cut(s)	101, 458
BseNI	ACTGG	1 cut(s)	906
BseRI	GAGGAG	3 cut(s)	102, 168, 650
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	2 cut(s)	84, 553
Bsh1236I	CGCG	1 cut(s)	647
Bsh1285I	CGRYCG	2 cut(s)	557, 618
BshNI	GGYRCC	2 cut(s)	586, 607
BshVI	ATCGAT	2 cut(s)	329, 742
BsiEI	CGRYCG	2 cut(s)	557, 618
BsiHKCI	CYCGRG	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	259, 553, 614
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	8, 826
Bsp143I	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
Bsp19I	CCATGG	2 cut(s)	26, 855
BspACI	CCGC	3 cut(s)	270, 605, 651
BspCNI	CTCAG	2 cut(s)	100, 459
BspDI	ATCGAT	2 cut(s)	329, 742
BspFNI	CGCG	1 cut(s)	647
BspLI	GGNNCC	3 cut(s)	588, 609, 951
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	874
BspT107I	GGYRCC	2 cut(s)	586, 607
BspTI	CTTAAG	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	576, 753
BsrFI	RCCGGY	2 cut(s)	258, 552
BsrI	ACTGG	1 cut(s)	906
BssAI	RCCGGY	2 cut(s)	258, 552
BssECI	CCNNGG	2 cut(s)	26, 855
BssMI	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
BssT1I	CCWWGG	2 cut(s)	26, 855
Bst4CI	ACNGT	2 cut(s)	350, 382
Bst6I	CTCTTC	3 cut(s)	259, 705, 959
BstAFI	CTTAAG	1 cut(s)	439
BstAPI	GCANNNNNTGC	2 cut(s)	81, 426
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	2 cut(s)	87, 467
BstDSI	CCRYGG	2 cut(s)	26, 855
BstF5I	GGATG	1 cut(s)	361
BstFNI	CGCG	1 cut(s)	647
BstH2I	RGCGCY	1 cut(s)	282
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	8 cut(s)	145, 172, 369, 742, 746, 869, 886, 971
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
BstMCI	CGRYCG	2 cut(s)	557, 618
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 276, 426, 435, 572
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	826
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	2 cut(s)	84, 553
BstX2I	RGATCY	1 cut(s)	169
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	169
Bsu15I	ATCGAT	2 cut(s)	329, 742
Bsu36I	CCTNAGG	1 cut(s)	467
BsuTUI	ATCGAT	2 cut(s)	329, 742
BtgI	CCRYGG	2 cut(s)	26, 855
BtgZI	GCGATG	1 cut(s)	547
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	1 cut(s)	260
CaiI	CAGNNNCTG	1 cut(s)	255
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	2 cut(s)	258, 552
Cfr13I	GGNCC	2 cut(s)	107, 950
ClaI	ATCGAT	2 cut(s)	329, 742
CseI	GACGC	1 cut(s)	636
Csp6I	GTAC	2 cut(s)	391, 959
CviAII	CATG	7 cut(s)	27, 289, 295, 491, 500, 776, 856
CviJI	RGCY	9 cut(s)	6, 137, 303, 339, 409, 465, 472, 523, 939
CviKI_1	RGCY	9 cut(s)	6, 137, 303, 339, 409, 465, 472, 523, 939
CviQI	GTAC	2 cut(s)	391, 959
DdeI	CTNAG	2 cut(s)	87, 467
DpnI	GATC	8 cut(s)	144, 171, 368, 741, 745, 868, 885, 970
DpnII	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
Eam1104I	CTCTTC	3 cut(s)	259, 705, 959
EarI	CTCTTC	3 cut(s)	259, 705, 959
Eco130I	CCWWGG	2 cut(s)	26, 855
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	107, 950
Eco57I	CTGAAG	1 cut(s)	983
Eco81I	CCTNAGG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	950
EcoRI	GAATTC	1 cut(s)	895
EcoT14I	CCWWGG	2 cut(s)	26, 855
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	26, 855
FaeI	CATG	7 cut(s)	30, 292, 298, 494, 503, 779, 859
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	7 cut(s)	26, 288, 294, 490, 499, 775, 855
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	3 cut(s)	142, 366, 883
Fnu4HI	GCNGC	2 cut(s)	73, 567
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	2 cut(s)	73, 567
FspBI	CTAG	6 cut(s)	210, 224, 317, 537, 834, 918
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	2 cut(s)	73, 567
HaeII	RGCGCY	1 cut(s)	282
HapII	CCGG	3 cut(s)	259, 553, 614
HgaI	GACGC	1 cut(s)	636
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	7 cut(s)	30, 292, 298, 494, 503, 779, 859
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	4 cut(s)	158, 307, 326, 359
HpaII	CCGG	3 cut(s)	259, 553, 614
HphI	GGTGA	4 cut(s)	284, 413, 652, 794
Hpy166II	GTNNAC	2 cut(s)	385, 643
Hpy188I	TCNGA	4 cut(s)	546, 658, 709, 813
Hpy188III	TCNNGA	5 cut(s)	249, 284, 353, 698, 887
Hpy8I	GTNNAC	2 cut(s)	385, 643
HpyAV	CCTTC	2 cut(s)	226, 410
HpyCH4III	ACNGT	2 cut(s)	350, 382
HpyCH4V	TGCA	7 cut(s)	11, 72, 119, 334, 510, 769, 775
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 276, 426, 435, 572
HpyF3I	CTNAG	2 cut(s)	87, 467
Hsp92II	CATG	7 cut(s)	30, 292, 298, 494, 503, 779, 859
HspAI	GCGC	1 cut(s)	279
KroI	GCCGGC	1 cut(s)	258
KroNI	GCCGGC	1 cut(s)	260
Ksp22I	TGATCA	3 cut(s)	142, 366, 883
Kzo9I	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	2 cut(s)	84, 553
LweI	GCATC	3 cut(s)	84, 210, 321
MaeI	CTAG	6 cut(s)	210, 224, 317, 537, 834, 918
MaeIII	GTNAC	3 cut(s)	226, 485, 908
MalI	GATC	8 cut(s)	144, 171, 368, 741, 745, 868, 885, 970
MboI	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
MboII	GAAGA	6 cut(s)	276, 464, 722, 797, 836, 976
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	8, 826
MluCI	AATT	5 cut(s)	703, 827, 848, 861, 895
MluI	ACGCGT	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	152, 368
MmeI	TCCRAC	1 cut(s)	708
MroNI	GCCGGC	1 cut(s)	258
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	1 cut(s)	440
MslI	CAYNNNNRTG	3 cut(s)	293, 774, 780
MspCI	CTTAAG	1 cut(s)	439
MspI	CCGG	3 cut(s)	259, 553, 614
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	5 cut(s)	81, 276, 426, 435, 572
NaeI	GCCGGC	1 cut(s)	260
NcoI	CCATGG	2 cut(s)	26, 855
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
NgoMIV	GCCGGC	1 cut(s)	258
NlaIII	CATG	7 cut(s)	30, 292, 298, 494, 503, 779, 859
NlaIV	GGNNCC	3 cut(s)	588, 609, 951
NmuCI	GTSAC	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	260
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	2 cut(s)	307, 326
PkrI	GCNGC	2 cut(s)	74, 568
PleI	GAGTC	2 cut(s)	152, 367
PpsI	GAGTC	2 cut(s)	152, 367
PpuMI	RGGWCCY	1 cut(s)	950
Psp5II	RGGWCCY	1 cut(s)	950
PspN4I	GGNNCC	3 cut(s)	588, 609, 951
PspPI	GGNCC	2 cut(s)	107, 950
PspPPI	RGGWCCY	1 cut(s)	950
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	392, 960
RsaNI	GTAC	2 cut(s)	391, 959
RseI	CAYNNNNRTG	3 cut(s)	293, 774, 780
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	2 cut(s)	73, 567
Sau3AI	GATC	8 cut(s)	142, 169, 366, 739, 743, 866, 883, 968
Sau96I	GGNCC	2 cut(s)	107, 950
SchI	GAGTC	2 cut(s)	152, 368
SduI	GDGCHC	2 cut(s)	8, 826
SetI	ASST	8 cut(s)	305, 318, 403, 411, 642, 717, 941, 1004
SfaNI	GCATC	3 cut(s)	84, 210, 321
SfcI	CTRYAG	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	282
SinI	GGWCC	2 cut(s)	107, 950
SlaI	CTCGAG	1 cut(s)	282
SmiMI	CAYNNNNRTG	3 cut(s)	293, 774, 780
SmlI	CTYRAG	2 cut(s)	282, 439
SmoI	CTYRAG	2 cut(s)	282, 439
Sse9I	AATT	5 cut(s)	703, 827, 848, 861, 895
SsiI	CCGC	3 cut(s)	270, 605, 651
SspMI	CTAG	6 cut(s)	210, 224, 317, 537, 834, 918
StyI	CCWWGG	2 cut(s)	26, 855
TaaI	ACNGT	2 cut(s)	350, 382
TaqI	TCGA	6 cut(s)	283, 305, 329, 557, 618, 742
TasI	AATT	5 cut(s)	703, 827, 848, 861, 895
TatI	WGTACW	1 cut(s)	390
TfiI	GAWTC	2 cut(s)	307, 326
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	72, 566
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	439
VpaK11BI	GGWCC	2 cut(s)	107, 950
XapI	RAATTY	1 cut(s)	895
XhoI	CTCGAG	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	6 cut(s)	210, 224, 317, 537, 834, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.