pycom07g07070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014413
Physical Location & Seq
Forward (+)
6419293 .. 6420189
897 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 897 bp
ATGAGGTGCAAGAAGCACCTCCCCGACCTCACCAGCACCCTCGGCGTCTGCGCCTCCTGTCTCCGGGAGCGCCTCGCCGCCATCATCGAGGCCCAAACCCAGGCCCAGGCCCAGCTCTCGAGACTCCACTCCCGGACACCCGCCGCGCTGCTCGATGAACCCAACCGCAAGTCCGATGCCAACCCTCGGCCGCTTATTTTCCCCCGCTCCGTCTCCCCTTACGTCTCTCGAAGAAAATCGGACGTCTCAACGTGGCACCAGCACCGGATTCGATTCTACAGTACGCCTCAGGTGGGCCCCACATATGCCACCGCCAACTCCACCTCCACCTCCACCATTGAAGGTTCGTGTAAGAAGAGCAAGACCCGGTTCTCGCTCCTATCGAGTCTTTTTCGATCCAGATCCGTCAAGTTCTGGTCGGGTCCTAGTGATTCGTCGCTTCCGGCCATTTCTTCGTCGTCGGCTTCGTCGCCCTCGTGGTTCTCTTCGATCTTCGCCAGAAAAACGCGGAATCGGTCGAAGCATCTCTACGTCGACGAGTCATCCGGTTGCCAGAGACCTCGGGGATTGTCGCCGGACGTAACGCCCAATCCCTTCGAAGACTGCGATCGATCGCGGCCGGGAAGCGGTGACTCGTCGGCAACGACACCGGAGTGGAAGAGGACGCCGGCGCTGGCTCCGCCGTCCACGCGGAGGGCACGTGCCGGGCAGGGAAAGAACAACATGTCGGGCCTTGCGTTTTGCCTTAGCCCGCTGGTTCGAGCCAGCCCGAACCGGCACTGGAACCAGAAGGGATTGCCACCTGAGATAGCCGGCGAGATTCGTGTCTCGGCGTCGTTCTGCAAGAGCCGGTCTAGGAAGCTGGCGGATTTCGGTAGAGCAAATCCTAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF740

Protein Analysis

299

Amino Acids

32.82

Weight (kDa)

10.88

Isoelectric Point (pI)

64.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014413)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44600 AT3G60200
fragaria_vesca FvH4_7g08720
malus_domestica MD07G1088100.v1.1
prunus_persica Prupe.2G114900_v2.0.a1
pyrus_communis pycom02g19430 pycom07g07070
rosa_laevigata RLG00000028945 RLG00000030787
rosa_multiflora Rmu_ssc0000434.1_g000045
rosa_roxburghii Rroxscaffold_4G00310220
rosa_rugosa Rorug01G0169900
rosa_samantha Rh1BG152800 Rh1DG185200 Rh5DG492500 Rh6AG022200
rosa_wichuraiana Rw1G015380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 246
AccB1I GGYRCC 1 cut(s) 255
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 534
AccII CGCG 4 cut(s) 146, 508, 616, 691
AclWI GGATC 2 cut(s) 390, 396
AcoI YGGCCR 3 cut(s) 188, 444, 617
AcvI CACGTG 1 cut(s) 701
AcyI GRCGYC 4 cut(s) 45, 243, 665, 833
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 7 cut(s) 63, 100, 106, 186, 293, 626, 693
AflIII ACRYGT 1 cut(s) 723
AgsI TTSAA 1 cut(s) 341
AjnI CCWGG 2 cut(s) 99, 105
AleI CACNNNNGTG 1 cut(s) 652
AluBI AGCT 2 cut(s) 115, 862
AluI AGCT 2 cut(s) 115, 862
Alw26I GTCTC 7 cut(s) 65, 115, 217, 229, 250, 550, 832
AlwI GGATC 2 cut(s) 390, 396
Ama87I CYCGRG 2 cut(s) 118, 561
AoxI GGCC 8 cut(s) 90, 102, 108, 188, 295, 444, 617, 730
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 148
AspLEI GCGC 4 cut(s) 53, 72, 148, 673
AspS9I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 422, 730
AsuC2I CCSGG 5 cut(s) 65, 133, 367, 621, 706
AsuHPI GGTGA 2 cut(s) 22, 641
AsuII TTCGAA 1 cut(s) 597
AvaI CYCGRG 2 cut(s) 118, 561
AvaII GGWCC 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 288
BaeGI GKGCMC 2 cut(s) 299, 700
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 299
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
BauI CACGAG 1 cut(s) 475
BbrPI CACGTG 1 cut(s) 701
BbsI GAAGAC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 667
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 2 cut(s) 101, 107
BcnI CCSGG 5 cut(s) 65, 133, 367, 621, 706
BcoDI GTCTC 7 cut(s) 65, 115, 217, 229, 250, 550, 832
BfaI CTAG 2 cut(s) 426, 855
BfmI CTRYAG 1 cut(s) 277
BfoI RGCGCY 2 cut(s) 73, 674
BisI GCNGC 5 cut(s) 78, 144, 149, 191, 617
BlsI GCNGC 5 cut(s) 79, 145, 150, 192, 618
Bme1390I CCNGG 7 cut(s) 65, 101, 107, 133, 367, 621, 706
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 2 cut(s) 118, 561
BmgT120I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 422, 730
BmiI GGNNCC 6 cut(s) 257, 297, 298, 423, 678, 785
BmrFI CCNGG 7 cut(s) 65, 101, 107, 133, 367, 621, 706
BmsI GCATC 2 cut(s) 166, 532
BpiI GAAGAC 1 cut(s) 606
Bpu10I CCTNAGC 1 cut(s) 746
Bpu14I TTCGAA 1 cut(s) 597
BpuMI CCSGG 5 cut(s) 65, 133, 367, 621, 706
Bsa29I ATCGAT 1 cut(s) 610
BsaAI YACGTR 1 cut(s) 701
BsaBI GATNNNNATC 1 cut(s) 400
BsaHI GRCGYC 4 cut(s) 45, 243, 665, 833
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 5 cut(s) 40, 99, 105, 185, 560
BsaWI WCCGGW 3 cut(s) 264, 545, 649
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 685, 715
Bsc4I CCNNNNNNNGG 7 cut(s) 63, 100, 106, 186, 293, 626, 693
Bse118I RCCGGY 4 cut(s) 667, 774, 812, 849
Bse1I ACTGG 1 cut(s) 785
Bse21I CCTNAGG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 400
BseBI CCWGG 2 cut(s) 101, 107
BseCI ATCGAT 1 cut(s) 610
BseDI CCNNGG 5 cut(s) 40, 99, 105, 185, 560
BseGI GGATG 1 cut(s) 542
BseJI GATNNNNATC 1 cut(s) 400
BseLI CCNNNNNNNGG 7 cut(s) 63, 100, 106, 186, 293, 626, 693
BseMII CTCAG 2 cut(s) 302, 795
BseNI ACTGG 1 cut(s) 785
BseSI GKGCMC 2 cut(s) 299, 700
BseX3I CGGCCG 2 cut(s) 188, 617
BseXI GCAGC 1 cut(s) 135
BseYI CCCAGC 1 cut(s) 111
Bsh1236I CGCG 4 cut(s) 146, 508, 616, 691
Bsh1285I CGRYCG 5 cut(s) 191, 518, 610, 614, 620
BshFI GGCC 8 cut(s) 92, 104, 110, 190, 297, 446, 619, 732
BshNI GGYRCC 1 cut(s) 255
BshVI ATCGAT 1 cut(s) 610
BsiEI CGRYCG 5 cut(s) 191, 518, 610, 614, 620
BsiHKCI CYCGRG 2 cut(s) 118, 561
BslI CCNNNNNNNGG 7 cut(s) 63, 100, 106, 186, 293, 626, 693
BsmAI GTCTC 7 cut(s) 65, 115, 217, 229, 250, 550, 832
BsmBI CGTCTC 3 cut(s) 217, 229, 250
BsnI GGCC 8 cut(s) 92, 104, 110, 190, 297, 446, 619, 732
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 2 cut(s) 118, 561
Bsp119I TTCGAA 1 cut(s) 597
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 299, 700
Bsp143I GATC 5 cut(s) 395, 401, 489, 607, 611
BspANI GGCC 8 cut(s) 92, 104, 110, 190, 297, 446, 619, 732
BspCNI CTCAG 2 cut(s) 301, 796
BspDI ATCGAT 1 cut(s) 610
BspFNI CGCG 4 cut(s) 146, 508, 616, 691
BspLI GGNNCC 6 cut(s) 257, 297, 298, 423, 678, 785
BspPI GGATC 2 cut(s) 390, 396
BspQI GCTCTTC 1 cut(s) 350
BspT104I TTCGAA 1 cut(s) 597
BspT107I GGYRCC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 207
BsrFI RCCGGY 4 cut(s) 667, 774, 812, 849
BsrI ACTGG 1 cut(s) 785
BssAI RCCGGY 4 cut(s) 667, 774, 812, 849
BssECI CCNNGG 5 cut(s) 40, 99, 105, 185, 560
BssMI GATC 5 cut(s) 395, 401, 489, 607, 611
BssNI GRCGYC 4 cut(s) 45, 243, 665, 833
BssSI CACGAG 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 475
Bst2UI CCWGG 2 cut(s) 101, 107
Bst4CI ACNGT 2 cut(s) 281, 893
Bst6I CTCTTC 3 cut(s) 350, 490, 653
BstACI GRCGYC 4 cut(s) 45, 243, 665, 833
BstBAI YACGTR 1 cut(s) 701
BstBI TTCGAA 1 cut(s) 597
BstC8I GCNNGC 6 cut(s) 669, 675, 752, 766, 814, 864
BstDEI CTNAG 3 cut(s) 288, 746, 804
BstF5I GGATG 1 cut(s) 542
BstFNI CGCG 4 cut(s) 146, 508, 616, 691
BstH2I RGCGCY 2 cut(s) 73, 674
BstHHI GCGC 4 cut(s) 53, 72, 148, 673
BstKTI GATC 5 cut(s) 398, 404, 492, 610, 614
BstMAI GTCTC 7 cut(s) 65, 115, 217, 229, 250, 550, 832
BstMBI GATC 5 cut(s) 395, 401, 489, 607, 611
BstMCI CGRYCG 5 cut(s) 191, 518, 610, 614, 620
BstMWI GCNNNNNNNGC 3 cut(s) 42, 679, 688
BstNI CCWGG 2 cut(s) 101, 107
BstNSI RCATGY 1 cut(s) 727
BstSCI CCNGG 7 cut(s) 63, 99, 105, 131, 365, 619, 704
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 2 cut(s) 299, 700
BstUI CGCG 4 cut(s) 146, 508, 616, 691
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 606
BstX2I RGATCY 1 cut(s) 401
BstYI RGATCY 1 cut(s) 401
BstZI CGGCCG 2 cut(s) 188, 617
Bsu15I ATCGAT 1 cut(s) 610
Bsu36I CCTNAGG 1 cut(s) 288
BsuRI GGCC 8 cut(s) 92, 104, 110, 190, 297, 446, 619, 732
BsuTUI ATCGAT 1 cut(s) 610
BtsCI GGATG 1 cut(s) 542
BtsIMutI CAGTG 1 cut(s) 778
Cac8I GCNNGC 6 cut(s) 669, 675, 752, 766, 814, 864
CfoI GCGC 4 cut(s) 53, 72, 148, 673
Cfr10I RCCGGY 4 cut(s) 667, 774, 812, 849
Cfr13I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 422, 730
ClaI ATCGAT 1 cut(s) 610
CseI GACGC 3 cut(s) 34, 673, 822
Csp6I GTAC 1 cut(s) 282
CviAII CATG 1 cut(s) 724
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 3 cut(s) 288, 746, 804
DpnI GATC 5 cut(s) 397, 403, 491, 609, 613
DpnII GATC 5 cut(s) 395, 401, 489, 607, 611
EaeI YGGCCR 3 cut(s) 188, 444, 617
EagI CGGCCG 2 cut(s) 188, 617
Eam1104I CTCTTC 3 cut(s) 350, 490, 653
EarI CTCTTC 3 cut(s) 350, 490, 653
EciI GGCGGA 2 cut(s) 669, 881
EclXI CGGCCG 2 cut(s) 188, 617
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 422
Eco52I CGGCCG 2 cut(s) 188, 617
Eco72I CACGTG 1 cut(s) 701
Eco81I CCTNAGG 1 cut(s) 288
Eco88I CYCGRG 2 cut(s) 118, 561
EcoO109I RGGNCCY 2 cut(s) 296, 422
EcoRII CCWGG 2 cut(s) 99, 105
EcoT38I GRGCYC 1 cut(s) 299
Esp3I CGTCTC 3 cut(s) 217, 229, 250
FaeI CATG 1 cut(s) 727
FaiI YATR 3 cut(s) 304, 306, 725
FatI CATG 1 cut(s) 723
FauI CCCGC 3 cut(s) 148, 212, 759
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 534
Fnu4HI GCNGC 5 cut(s) 78, 144, 149, 191, 617
FokI GGATG 1 cut(s) 529
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 5 cut(s) 78, 144, 149, 191, 617
FspBI CTAG 2 cut(s) 426, 855
GlaI GCGC 4 cut(s) 52, 71, 147, 672
GluI GCNGC 5 cut(s) 78, 144, 149, 191, 617
GsaI CCCAGC 1 cut(s) 115
HaeII RGCGCY 2 cut(s) 73, 674
HaeIII GGCC 8 cut(s) 92, 104, 110, 190, 297, 446, 619, 732
HgaI GACGC 3 cut(s) 34, 673, 822
HhaI GCGC 4 cut(s) 53, 72, 148, 673
Hin1I GRCGYC 4 cut(s) 45, 243, 665, 833
Hin1II CATG 1 cut(s) 727
Hin6I GCGC 4 cut(s) 51, 70, 146, 671
HinP1I GCGC 4 cut(s) 51, 70, 146, 671
HincII GTYRAC 1 cut(s) 535
HindII GTYRAC 1 cut(s) 535
HinfI GANTC 9 cut(s) 123, 268, 273, 385, 431, 511, 539, 632, 820
HphI GGTGA 2 cut(s) 22, 641
Hpy166II GTNNAC 2 cut(s) 535, 687
Hpy188I TCNGA 2 cut(s) 175, 241
Hpy188III TCNNGA 4 cut(s) 118, 120, 228, 399
Hpy8I GTNNAC 2 cut(s) 535, 687
Hpy99I CGWCG 8 cut(s) 439, 460, 463, 472, 536, 539, 640, 838
HpyAV CCTTC 3 cut(s) 335, 604, 784
HpyCH4III ACNGT 2 cut(s) 281, 893
HpyCH4IV ACGT 6 cut(s) 222, 243, 251, 531, 579, 700
HpyCH4V TGCA 2 cut(s) 9, 843
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 679, 688
HpyF3I CTNAG 3 cut(s) 288, 746, 804
HpySE526I ACGT 6 cut(s) 222, 243, 251, 531, 579, 700
Hsp92I GRCGYC 4 cut(s) 45, 243, 665, 833
Hsp92II CATG 1 cut(s) 727
HspAI GCGC 4 cut(s) 51, 70, 146, 671
KroI GCCGGC 2 cut(s) 667, 812
KroNI GCCGGC 2 cut(s) 669, 814
Kzo9I GATC 5 cut(s) 395, 401, 489, 607, 611
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 4 cut(s) 67, 212, 381, 682
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 2 cut(s) 166, 532
MaeI CTAG 2 cut(s) 426, 855
MaeII ACGT 6 cut(s) 222, 243, 251, 531, 579, 700
MaeIII GTNAC 2 cut(s) 580, 629
MalI GATC 5 cut(s) 397, 403, 491, 609, 613
MbiI CCGCTC 1 cut(s) 207
MboI GATC 5 cut(s) 395, 401, 489, 607, 611
MboII GAAGA 7 cut(s) 243, 367, 444, 477, 484, 611, 670
MflI RGATCY 1 cut(s) 401
MhlI GDGCHC 2 cut(s) 299, 700
MlyI GAGTC 4 cut(s) 117, 394, 548, 626
MreI CGCCGGCG 1 cut(s) 667
MroNI GCCGGC 2 cut(s) 667, 812
MslI CAYNNNNRTG 1 cut(s) 652
MspA1I CMGCKG 1 cut(s) 754
MspR9I CCNGG 7 cut(s) 65, 101, 107, 133, 367, 621, 706
MvaI CCWGG 2 cut(s) 101, 107
MvnI CGCG 4 cut(s) 146, 508, 616, 691
MwoI GCNNNNNNNGC 3 cut(s) 42, 679, 688
NaeI GCCGGC 2 cut(s) 669, 814
NciI CCSGG 5 cut(s) 65, 133, 367, 621, 706
NdeI CATATG 1 cut(s) 304
NdeII GATC 5 cut(s) 395, 401, 489, 607, 611
NgoMIV GCCGGC 2 cut(s) 667, 812
NlaIII CATG 1 cut(s) 727
NlaIV GGNNCC 6 cut(s) 257, 297, 298, 423, 678, 785
NmeAIII GCCGAG 3 cut(s) 21, 166, 809
NmuCI GTSAC 1 cut(s) 629
NspI RCATGY 1 cut(s) 727
NspV TTCGAA 1 cut(s) 597
OliI CACNNNNGTG 1 cut(s) 652
PaeR7I CTCGAG 1 cut(s) 118
PciI ACATGT 1 cut(s) 723
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 6 cut(s) 380, 464, 473, 603, 641, 734
PdiI GCCGGC 2 cut(s) 669, 814
PfeI GAWTC 5 cut(s) 268, 273, 431, 511, 820
PfoI TCCNGGA 2 cut(s) 63, 131
PkrI GCNGC 5 cut(s) 79, 145, 150, 192, 618
Ple19I CGATCG 2 cut(s) 610, 614
PleI GAGTC 4 cut(s) 117, 393, 547, 626
PmaCI CACGTG 1 cut(s) 701
PmlI CACGTG 1 cut(s) 701
PpsI GAGTC 4 cut(s) 117, 393, 547, 626
Ppu21I YACGTR 1 cut(s) 701
PpuMI RGGWCCY 1 cut(s) 422
PscI ACATGT 1 cut(s) 723
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 99, 105
PspCI CACGTG 1 cut(s) 701
PspFI CCCAGC 1 cut(s) 111
PspGI CCWGG 2 cut(s) 99, 105
PspN4I GGNNCC 6 cut(s) 257, 297, 298, 423, 678, 785
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 7 cut(s) 91, 103, 109, 295, 296, 422, 730
PspPPI RGGWCCY 1 cut(s) 422
PsuI RGATCY 1 cut(s) 401
PvuI CGATCG 2 cut(s) 610, 614
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
RseI CAYNNNNRTG 1 cut(s) 652
SalI GTCGAC 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 350
SatI GCNGC 5 cut(s) 78, 144, 149, 191, 617
Sau3AI GATC 5 cut(s) 395, 401, 489, 607, 611
Sau96I GGNCC 7 cut(s) 91, 103, 109, 295, 296, 422, 730
SchI GAGTC 4 cut(s) 117, 394, 548, 626
ScrFI CCNGG 7 cut(s) 65, 101, 107, 133, 367, 621, 706
SduI GDGCHC 2 cut(s) 299, 700
SfaNI GCATC 2 cut(s) 166, 532
SfcI CTRYAG 1 cut(s) 277
Sfr274I CTCGAG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 597
SgrAI CRCCGGYG 1 cut(s) 667
SgrDI CGTCGACG 1 cut(s) 533
SinI GGWCC 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 652
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SspMI CTAG 2 cut(s) 426, 855
StyD4I CCNGG 7 cut(s) 63, 99, 105, 131, 365, 619, 704
TaaI ACNGT 2 cut(s) 281, 893
TaiI ACGT 6 cut(s) 225, 246, 254, 534, 582, 703
TaqII GACCGA 1 cut(s) 504
TauI GCSGC 4 cut(s) 80, 146, 193, 619
TfiI GAWTC 5 cut(s) 268, 273, 431, 511, 820
TscAI CASTG 1 cut(s) 785
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 2 cut(s) 199, 394
TspRI CASTG 1 cut(s) 785
VpaK11BI GGWCC 1 cut(s) 422
XceI RCATGY 1 cut(s) 727
XhoI CTCGAG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 534
XspI CTAG 2 cut(s) 426, 855
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.