pycom07g09940

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012660
Physical Location & Seq
Forward (+)
9573168 .. 9573458
291 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09940.1

Sequence Viewer

Length: 291 bp
ATGTGTCAAGATGGAAGCCAAAACGTGGTTATAGAGCAAATCAAGGGTCTGCTGCAATCTGTCCAGGCATACTCTGCAACCCCAGCGGCCGGGAATGCAGTCGTGAACACTGGGAATGAAACTTCAGAGTTTGAAGCGAAGGTGGCAAGTGGTCTTATAAACACTACAGCTGCGGCGTCAACAAATCCAGGCACAAGCGAGCAAGTTTCTGGAACACCATCGAGCAAGGAATGCGAAGTTGCTGCCTCCTCAGATTCATTTGTTCAGCCACAACCCGAAGGCCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

97

Amino Acids

9.74

Weight (kDa)

4.05

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 25
AciI CCGC 2 cut(s) 86, 173
AcoI YGGCCR 1 cut(s) 87
AcuI CTGAAG 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 25, 89
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 2 cut(s) 63, 187
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
AoxI GGCC 2 cut(s) 87, 280
ApeKI GCWGC 3 cut(s) 52, 170, 242
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AsuC2I CCSGG 1 cut(s) 91
BbvI GCAGC 3 cut(s) 39, 157, 229
BccI CCATC 2 cut(s) 5, 226
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 65, 189
BcnI CCSGG 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 5 cut(s) 53, 87, 171, 174, 243
BlsI GCNGC 5 cut(s) 54, 88, 172, 175, 244
Bme1390I CCNGG 3 cut(s) 65, 91, 189
BmrFI CCNGG 3 cut(s) 65, 91, 189
BmrI ACTGGG 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 89
Bse1I ACTGG 1 cut(s) 115
BseBI CCWGG 2 cut(s) 65, 189
BseLI CCNNNNNNNGG 2 cut(s) 25, 89
BseMII CTCAG 1 cut(s) 264
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 238
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 39, 157, 229
BseYI CCCAGC 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 89, 282
BsiEI CGRYCG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 90
BslI CCNNNNNNNGG 2 cut(s) 25, 89
BsmI GAATGC 2 cut(s) 100, 236
BsnI GGCC 2 cut(s) 89, 282
BspACI CCGC 2 cut(s) 86, 173
BspANI GGCC 2 cut(s) 89, 282
BspCNI CTCAG 1 cut(s) 263
BsrI ACTGG 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 65, 189
BstACI GRCGYC 1 cut(s) 176
BstAPI GCANNNNNTGC 2 cut(s) 74, 231
BstC8I GCNNGC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 250
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 5 cut(s) 74, 83, 95, 143, 231
BstNI CCWGG 2 cut(s) 65, 189
BstSCI CCNGG 3 cut(s) 63, 89, 187
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 39, 157, 229
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 2 cut(s) 89, 282
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 200
CseI GACGC 1 cut(s) 165
CviJI RGCY 5 cut(s) 18, 89, 170, 268, 282
CviKI_1 RGCY 5 cut(s) 18, 89, 170, 268, 282
DdeI CTNAG 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 87
EagI CGGCCG 1 cut(s) 87
EclXI CGGCCG 1 cut(s) 87
Eco52I CGGCCG 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 63, 187
FaiI YATR 3 cut(s) 32, 70, 158
Fnu4HI GCNGC 5 cut(s) 53, 87, 171, 174, 243
Fsp4HI GCNGC 5 cut(s) 53, 87, 171, 174, 243
GluI GCNGC 5 cut(s) 53, 87, 171, 174, 243
GsaI CCCAGC 1 cut(s) 86
HaeIII GGCC 2 cut(s) 89, 282
HapII CCGG 1 cut(s) 90
HgaI GACGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 2 cut(s) 106, 180
Hpy188I TCNGA 2 cut(s) 127, 253
Hpy188III TCNNGA 3 cut(s) 8, 103, 210
Hpy8I GTNNAC 2 cut(s) 106, 180
HpyAV CCTTC 2 cut(s) 133, 272
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 55, 77, 98
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 83, 95, 143, 231
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 1 cut(s) 24
Hsp92I GRCGYC 1 cut(s) 176
LpnPI CCDG 8 cut(s) 50, 77, 96, 96, 103, 174, 195, 201
Lsp1109I GCAGC 3 cut(s) 39, 157, 229
MaeII ACGT 1 cut(s) 24
MnlI CCTC 2 cut(s) 256, 259
MspA1I CMGCKG 2 cut(s) 86, 170
MspI CCGG 1 cut(s) 90
MspR9I CCNGG 3 cut(s) 65, 91, 189
Mva1269I GAATGC 2 cut(s) 100, 236
MvaI CCWGG 2 cut(s) 65, 189
MwoI GCNNNNNNNGC 5 cut(s) 74, 83, 95, 143, 231
NciI CCSGG 1 cut(s) 91
PctI GAATGC 2 cut(s) 100, 236
PfeI GAWTC 1 cut(s) 254
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 5 cut(s) 54, 88, 172, 175, 244
PsiI TTATAA 1 cut(s) 158
Psp6I CCWGG 2 cut(s) 63, 187
PspFI CCCAGC 1 cut(s) 82
PspGI CCWGG 2 cut(s) 63, 187
PvuII CAGCTG 1 cut(s) 170
SatI GCNGC 5 cut(s) 53, 87, 171, 174, 243
ScrFI CCNGG 3 cut(s) 65, 91, 189
SetI ASST 3 cut(s) 27, 144, 172
SfcI CTRYAG 1 cut(s) 165
SsiI CCGC 2 cut(s) 86, 173
StyD4I CCNGG 3 cut(s) 63, 89, 187
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 221
TauI GCSGC 2 cut(s) 89, 176
TfiI GAWTC 1 cut(s) 254
TscAI CASTG 1 cut(s) 115
TseI GCWGC 3 cut(s) 52, 170, 242
TspDTI ATGAA 2 cut(s) 132, 246
TspRI CASTG 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.