Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015786.1

Orthogroup ID

OG0012660

Physical Location & Seq

Genomic Coordinates Forward (+)

666 .. 1083

Gene Structure 418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015786.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 418 bp

atggattactcctacacacaaacccctcaacctgaccctaaccaataccagcacccataccaatcccaacctcaacaaccaccaccaccatatgacccttcaacaattaaaccctatgatcctcactcatactattattcctatgatccaaaccaccactaccaatattacaatcccacatcccaagattacaccactaacccccaattgtaccaagaacccacttcgattcatcctcccggcgtcccgattccggcgccgccgccgcagacgtcggattccgacacggcccatttgcagaatgcgtattctagacatggggttgtggagaatcagaaccagcagccaatcaattcgggttccggttcgagtcaggcaccggtttcggagataacccagtttccggcgaaggtggagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

139

Amino Acids

15.78

Weight (kDa)

4.88

Isoelectric Point (pI)

64.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012660)

Species	Orthologous Gene IDs
malus_domestica	MD02G1210900.v1.1 MD07G1114400.v1.1
prunus_persica	Prupe.2G137000_v2.0.a1
pyrus_communis	pycom02g17390 pycom07g09930 pycom07g09940
rosa_chinensis	RchiOBHm_Chr1g0349021
rosa_laevigata	RLG00000028611
rosa_multiflora	Rmu_sc0009855.1_g000008 Rmu_sc0015786.1_g000001 Rmu_sc0038026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306230
rosa_rugosa	Rorug01G0199500
rosa_samantha	Rh1AG217100 Rh1BG182600 Rh1CG201500 Rh1DG212600
rosa_wichuraiana	Rw0G005390 Rw1G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	275
AccB1I	GGYRCC	2 cut(s)	256, 376
AciI	CCGC	3 cut(s)	260, 263, 266
AclWI	GGATC	2 cut(s)	113, 140
AcyI	GRCGYC	3 cut(s)	243, 257, 272
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	253, 403
AgeI	ACCGGT	1 cut(s)	379
AgsI	TTSAA	1 cut(s)	102
AlwI	GGATC	2 cut(s)	113, 140
AoxI	GGCC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	343
AsiGI	ACCGGT	1 cut(s)	379
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	240
BanI	GGYRCC	2 cut(s)	256, 376
BbvI	GCAGC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	303
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BcnI	CCSGG	1 cut(s)	240
BfaI	CTAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	260
BisI	GCNGC	4 cut(s)	260, 263, 266, 344
BlsI	GCNGC	4 cut(s)	261, 264, 267, 345
Bme1390I	CCNGG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	3 cut(s)	258, 361, 378
BmrFI	CCNGG	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	391
BmuI	ACTGGG	1 cut(s)	391
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	3 cut(s)	243, 257, 272
BsaWI	WCCGGW	2 cut(s)	362, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 403
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	397
BseGI	GGATG	2 cut(s)	179, 232
BseLI	CCNNNNNNNGG	2 cut(s)	253, 403
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	290
BshNI	GGYRCC	2 cut(s)	256, 376
BshTI	ACCGGT	1 cut(s)	379
BsiSI	CCGG	5 cut(s)	240, 254, 363, 380, 404
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	253, 403
BsmFI	GGGAC	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	290
Bsp143I	GATC	2 cut(s)	118, 145
BspACI	CCGC	3 cut(s)	260, 263, 266
BspANI	GGCC	1 cut(s)	290
BspLI	GGNNCC	3 cut(s)	258, 361, 378
BspPI	GGATC	2 cut(s)	113, 140
BspT107I	GGYRCC	2 cut(s)	256, 376
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	379
BssMI	GATC	2 cut(s)	118, 145
BssNI	GRCGYC	3 cut(s)	243, 257, 272
BstACI	GRCGYC	3 cut(s)	243, 257, 272
BstF5I	GGATG	2 cut(s)	179, 232
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	2 cut(s)	121, 148
BstMBI	GATC	2 cut(s)	118, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	290
BtsCI	GGATG	2 cut(s)	179, 232
CfoI	GCGC	1 cut(s)	259
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	211
CspAI	ACCGGT	1 cut(s)	379
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	2 cut(s)	290, 346
CviKI_1	RGCY	2 cut(s)	290, 346
CviQI	GTAC	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	258
DpnI	GATC	2 cut(s)	120, 147
DpnII	GATC	2 cut(s)	118, 145
EgeI	GGCGCC	1 cut(s)	258
EheI	GGCGCC	1 cut(s)	258
FaeI	CATG	1 cut(s)	320
FaiI	YATR	7 cut(s)	58, 91, 93, 117, 130, 144, 318
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	4 cut(s)	260, 263, 266, 344
FokI	GGATG	2 cut(s)	166, 219
Fsp4HI	GCNGC	4 cut(s)	260, 263, 266, 344
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	4 cut(s)	260, 263, 266, 344
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	290
HapII	CCGG	5 cut(s)	240, 254, 363, 380, 404
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	3 cut(s)	243, 257, 272
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	5 cut(s)	229, 250, 278, 331, 370
HpaII	CCGG	5 cut(s)	240, 254, 363, 380, 404
Hpy188I	TCNGA	4 cut(s)	277, 283, 336, 388
Hpy188III	TCNNGA	2 cut(s)	247, 312
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	108, 403
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	298
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	3 cut(s)	243, 257, 272
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	257
KasI	GGCGCC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	118, 145
LpnPI	CCDG	9 cut(s)	45, 62, 253, 267, 353, 359, 376, 393, 410
Lsp1109I	GCAGC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	272
MalI	GATC	2 cut(s)	120, 147
MboI	GATC	2 cut(s)	118, 145
MfeI	CAATTG	1 cut(s)	206
MluCI	AATT	3 cut(s)	105, 206, 352
Mly113I	GGCGCC	1 cut(s)	257
MlyI	GAGTC	1 cut(s)	379
MmeI	TCCRAC	2 cut(s)	255, 306
MnlI	CCTC	5 cut(s)	36, 81, 132, 246, 409
MseI	TTAA	1 cut(s)	108
MspI	CCGG	5 cut(s)	240, 254, 363, 380, 404
MspR9I	CCNGG	1 cut(s)	240
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	307
MwoI	GCNNNNNNNGC	1 cut(s)	265
NarI	GGCGCC	1 cut(s)	257
NciI	CCSGG	1 cut(s)	240
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	2 cut(s)	118, 145
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	3 cut(s)	258, 361, 378
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	4 cut(s)	229, 250, 278, 331
PinAI	ACCGGT	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	261, 264, 267, 345
PleI	GAGTC	1 cut(s)	378
PluTI	GGCGCC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	258, 361, 378
PspPI	GGNCC	1 cut(s)	289
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	4 cut(s)	260, 263, 266, 344
Sau3AI	GATC	2 cut(s)	118, 145
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	379
ScrFI	CCNGG	1 cut(s)	240
SetI	ASST	4 cut(s)	34, 73, 275, 414
SfoI	GGCGCC	1 cut(s)	258
Sse9I	AATT	3 cut(s)	105, 206, 352
SsiI	CCGC	3 cut(s)	260, 263, 266
SspDI	GGCGCC	1 cut(s)	256
SspI	AATATT	1 cut(s)	167
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	238
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	2 cut(s)	227, 368
TasI	AATT	3 cut(s)	105, 206, 352
TauI	GCSGC	3 cut(s)	262, 265, 268
TfiI	GAWTC	4 cut(s)	229, 250, 278, 331
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312
ZraI	GACGTC	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.