Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012660

Physical Location & Seq

Genomic Coordinates Forward (+)

42087602 .. 42092903

Gene Structure 5302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57500

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1977 bp

ATGGATTACTCCTACACACAAACCCCTCAACCTGACCCTAACCAATACCAGCACCCATACCAATCTCAACCTCAACAACCACCACCACCATATGACCCTTCAACAATTCAACCCTATGATCCTCACTCATACTATTATTCCTATGATCCAAACCACCACTACCAATATTTCAATCCCACATCCCAAGATTACACCACTAACCCCCAATTGTACCAAGAACCCACTTCGATTCATCCTCCCGGCGTCCCGATTCCGGCGCCTCCGCCGCAGCCGGCGGATTCCGACGCCGCCCAGTTGCAGAATGCGTATTATGGACATGGGGTTGTGGAGAATCAGCACCAGCAGCCAATCAATTCGGGTTCGGCTTCGGGTCAGGCAGCGGTTTCGGAGATAACCCAGATTCCGGGGAAGGTGGAGGTGGCGCAGGTAGCCTCGCAACCACCGATTGGGCAAACTCCATATAGAGGTGGAGGAAGGAGGGGCAATAGGCCCTTCCGAGGGGGTGGTCGGGGCCATTTGGGTTACCATGGTCATGGACCAGATGGCTCGGCACCACCTTTGCATGGTAGGGGACGTGGCCAGGGTGGTGGTAGGCACTTTCAACTGTATGGTGCTGCATCGAGCAATCCAAATTCAGCATCTGTACCAGCTGAAGGCGCAGCTTCTTTAAAGCAGTCGCCTTCAGCATTGGTCCCTTTGCAGGCACCATTACCTGTACCAACACAAGTGTCTTCTGCTTCATTCTGGCGACTTCCTCGTATGGCTTGGTGTGAACTTTGTAGGGTTGACTGCAACACTCTTGAAACCCTTGAGCAGCATAAAAATGGAAAGCGGCATAAAAAAATTCTGCAGGTTCATGAGGAGTTGCAGAAACACAACAAAGTCAATACTGAACAGCAGAATGCACAAATGCCCAACAATGAATTAAAACCAGAAGTTGGTCAGACTGAGAAAGTTGACGGATCTGAGGAAAAGCAACCCTCAGAAGAAAAACTGACCTCAGAAGAAGTTACTGATGATAATAGAAATGAAACAGATCAAAGAGAAGCAGTGGGAAATTCTGAAGCTTCTGAAGAACCTGAGAACAAGTCCAGGGATCACTTTGCAGCTCGGGGACGTGGATTCAAGCGTAGGATGCGAGGGGGTCGAGGGGCTAAGTATATGAGGACATATGAAGGATCAAGAAGACTAGTTGAGCCTCCTAAACCCAAAGTGATTCCTTTCATATGTGAATTGTGCAATGTCAAGTGTGAGTCACAGGTGGTTTTTGATAGTCATTTGAGTGGTAAAAAGCACCTAGCAACCCTCAAGAGGTTTCAAAGCCACCGAGCTTTGTATGGAGAACAGGGACTTCAAGCACTTTACCCACCTAACTTAACTGCTGCGTCAACTTCAGTCACCCCTCATGTAGAGCAAGCCACCCCACATGTAGAGCAAGTCGCCCCTCCTCATGTACAGCAAGTTAGCCCTCCTCGTGTACAGCAAGGTGTCATTGATCCGCAGGTCTTCTTGGCGCAAGTCCAGCAAGGTGGCAATGATCCTGAGGTCCTGTTGGGCAAACTATTGATGTCTTATATGCTCTCTAAAACCCAAGCACAAGAAATAGCACCCGCTCCAGGGCCTACATCTACCGTGGCCACAGCTCCAGGAACAAATATTGCAACTCAAAATCAACTGCAGTCACATATCCAAGGATTACTAGCGATGTGTCAAAATGGGTTCCAAAATGCAGTTATGGTGGGCGCCAAAAGTCAGCCGCAATCTGGCACCTTGAATTCTGAAGCCCCAGCAGCCGGAAACAGAGACACAAACACTGGGAACGGAACTTTGCAGATTCATGCAAAGGAGGAAAGTGTTCCTAAAAATGATTCAGTTGTGGCGCCAGCAGAGAACGCAGGCCCAAGCAAGCAAGTTTCTGAAAAAGCATCACTTGAAGAATGTGAAGTTGCCTCGGCCTCCAGTTCAGCCAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

658

Amino Acids

71.46

Weight (kDa)

6.59

Isoelectric Point (pI)

55.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	408 - 432	1.9e-08	Zinc-finger of C2H2 type
zf-C2H2_jaz	PF12171	408 - 432	2.7e-06	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012660)

Species	Orthologous Gene IDs
malus_domestica	MD02G1210900.v1.1 MD07G1114400.v1.1
prunus_persica	Prupe.2G137000_v2.0.a1
pyrus_communis	pycom02g17390 pycom07g09930 pycom07g09940
rosa_chinensis	RchiOBHm_Chr1g0349021
rosa_laevigata	RLG00000028611
rosa_multiflora	Rmu_sc0009855.1_g000008 Rmu_sc0015786.1_g000001 Rmu_sc0038026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306230
rosa_rugosa	Rorug01G0199500
rosa_samantha	Rh1AG217100 Rh1BG182600 Rh1CG201500 Rh1DG212600
rosa_wichuraiana	Rw0G005390 Rw1G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	415, 841, 1492
AccB1I	GGYRCC	6 cut(s)	256, 550, 703, 1742, 1766, 1879
AccB7I	CCANNNNNTGG	2 cut(s)	446, 938
AccBSI	CCGCTC	1 cut(s)	1613
AciI	CCGC	9 cut(s)	263, 266, 275, 288, 380, 832, 1499, 1611, 1757
AclWI	GGATC	7 cut(s)	113, 140, 970, 1104, 1186, 1490, 1532
AcoI	YGGCCR	2 cut(s)	577, 1635
AcsI	RAATTY	4 cut(s)	631, 843, 1057, 1774
AcuI	CTGAAG	6 cut(s)	666, 672, 1083, 1092, 1377, 1800
AcyI	GRCGYC	5 cut(s)	243, 257, 285, 1743, 1880
AfaI	GTAC	5 cut(s)	212, 645, 717, 1455, 1479
AflIII	ACRYGT	1 cut(s)	1426
AhlI	ACTAGT	1 cut(s)	1189
AjiI	CACGTC	2 cut(s)	575, 1118
AjnI	CCWGG	4 cut(s)	579, 1091, 1615, 1645
AluBI	AGCT	6 cut(s)	650, 662, 1067, 1109, 1331, 1643
AluI	AGCT	6 cut(s)	650, 662, 1067, 1109, 1331, 1643
Alw26I	GTCTC	1 cut(s)	1797
AlwI	GGATC	7 cut(s)	113, 140, 970, 1104, 1186, 1490, 1532
AlwNI	CAGNNNCTG	2 cut(s)	641, 1974
Ama87I	CYCGRG	1 cut(s)	1110
AoxI	GGCC	7 cut(s)	488, 511, 577, 1619, 1635, 1897, 1953
ApeKI	GCWGC	9 cut(s)	268, 343, 377, 614, 659, 814, 1106, 1382, 1790
ApoI	RAATTY	4 cut(s)	631, 843, 1057, 1774
Asp700I	GAANNNNTTC	1 cut(s)	1854
AspLEI	GCGC	6 cut(s)	259, 424, 659, 1516, 1745, 1882
AspS9I	GGNCC	7 cut(s)	489, 511, 536, 691, 1546, 1619, 1898
AsuC2I	CCSGG	2 cut(s)	240, 405
AsuHPI	GGTGA	1 cut(s)	1390
AvaI	CYCGRG	1 cut(s)	1110
AvaII	GGWCC	3 cut(s)	536, 691, 1546
AxyI	CCTNAGG	1 cut(s)	1542
BalI	TGGCCA	2 cut(s)	579, 1637
BanI	GGYRCC	6 cut(s)	256, 550, 703, 1742, 1766, 1879
BauI	CACGAG	1 cut(s)	1473
BbsI	GAAGAC	3 cut(s)	723, 1192, 1498
BbvI	GCAGC	9 cut(s)	280, 355, 389, 601, 671, 826, 1118, 1369, 1802
BccI	CCATC	1 cut(s)	536
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BciT130I	CCWGG	4 cut(s)	581, 1093, 1617, 1647
BcnI	CCSGG	2 cut(s)	240, 405
BcoDI	GTCTC	1 cut(s)	1797
BcuI	ACTAGT	1 cut(s)	1189
BfaI	CTAG	3 cut(s)	1190, 1298, 1700
BfmI	CTRYAG	2 cut(s)	848, 1676
BfoI	RGCGCY	3 cut(s)	260, 1746, 1883
BfuAI	ACCTGC	3 cut(s)	415, 841, 1492
Bme1390I	CCNGG	6 cut(s)	240, 405, 581, 1093, 1617, 1647
Bme18I	GGWCC	3 cut(s)	536, 691, 1546
BmeT110I	CYCGRG	1 cut(s)	1110
BmgBI	CACGTC	2 cut(s)	575, 1118
BmgT120I	GGNCC	7 cut(s)	489, 511, 536, 691, 1546, 1619, 1898
BmiI	GGNNCC	9 cut(s)	258, 512, 552, 693, 705, 1721, 1744, 1768, 1881
BmrFI	CCNGG	6 cut(s)	240, 405, 581, 1093, 1617, 1647
BmrI	ACTGGG	2 cut(s)	286, 1824
BmsI	GCATC	4 cut(s)	626, 647, 1125, 1934
BmuI	ACTGGG	2 cut(s)	286, 1824
BpiI	GAAGAC	3 cut(s)	723, 1192, 1498
BpmI	CTGGAG	3 cut(s)	1599, 1629, 1942
BpuEI	CTTGAG	2 cut(s)	830, 1292
BpuMI	CCSGG	2 cut(s)	240, 405
BsaHI	GRCGYC	5 cut(s)	243, 257, 285, 1743, 1880
BsaJI	CCNNGG	9 cut(s)	404, 496, 526, 580, 1092, 1616, 1632, 1690, 1950
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	3 cut(s)	292, 1819, 1959
Bse21I	CCTNAGG	1 cut(s)	1542
Bse3DI	GCAATG	2 cut(s)	1246, 1540
BseBI	CCWGG	4 cut(s)	581, 1093, 1617, 1647
BseDI	CCNNGG	9 cut(s)	404, 496, 526, 580, 1092, 1616, 1632, 1690, 1950
BseGI	GGATG	3 cut(s)	179, 232, 1140
BseMI	GCAATG	2 cut(s)	1246, 1540
BseMII	CTCAG	6 cut(s)	939, 957, 996, 1014, 1071, 1533
BseNI	ACTGG	3 cut(s)	292, 1819, 1959
BseRI	GAGGAG	3 cut(s)	875, 1437, 1461
BseXI	GCAGC	9 cut(s)	280, 355, 389, 601, 671, 826, 1118, 1369, 1802
BseYI	CCCAGC	1 cut(s)	1786
BshFI	GGCC	7 cut(s)	490, 513, 579, 1621, 1637, 1899, 1955
BshNI	GGYRCC	6 cut(s)	256, 550, 703, 1742, 1766, 1879
BsiHKCI	CYCGRG	1 cut(s)	1110
BsiSI	CCGG	5 cut(s)	240, 254, 272, 404, 1794
BslFI	GGGAC	5 cut(s)	230, 585, 677, 1128, 1362
BsmAI	GTCTC	1 cut(s)	1797
BsmFI	GGGAC	5 cut(s)	230, 585, 677, 1128, 1362
BsmI	GAATGC	2 cut(s)	307, 907
BsnI	GGCC	7 cut(s)	490, 513, 579, 1621, 1637, 1899, 1955
BsoBI	CYCGRG	1 cut(s)	1110
Bsp1407I	TGTACA	2 cut(s)	1453, 1477
Bsp143I	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	9 cut(s)	263, 266, 275, 288, 380, 832, 1499, 1611, 1757
BspANI	GGCC	7 cut(s)	490, 513, 579, 1621, 1637, 1899, 1955
BspCNI	CTCAG	6 cut(s)	940, 958, 995, 1013, 1072, 1534
BspHI	TCATGA	1 cut(s)	856
BspLI	GGNNCC	9 cut(s)	258, 512, 552, 693, 705, 1721, 1744, 1768, 1881
BspMAI	CTGCAG	2 cut(s)	852, 1680
BspMI	ACCTGC	3 cut(s)	415, 841, 1492
BspPI	GGATC	7 cut(s)	113, 140, 970, 1104, 1186, 1490, 1532
BspT107I	GGYRCC	6 cut(s)	256, 550, 703, 1742, 1766, 1879
BsrBI	CCGCTC	1 cut(s)	1613
BsrDI	GCAATG	2 cut(s)	1246, 1540
BsrFI	RCCGGY	1 cut(s)	271
BsrGI	TGTACA	2 cut(s)	1453, 1477
BsrI	ACTGG	3 cut(s)	292, 1819, 1959
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	9 cut(s)	404, 496, 526, 580, 1092, 1616, 1632, 1690, 1950
BssMI	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
BssNI	GRCGYC	5 cut(s)	243, 257, 285, 1743, 1880
BssSI	CACGAG	1 cut(s)	1473
BssT1I	CCWWGG	2 cut(s)	526, 1690
Bst2BI	CACGAG	1 cut(s)	1473
Bst2UI	CCWGG	4 cut(s)	581, 1093, 1617, 1647
Bst4CI	ACNGT	2 cut(s)	606, 1633
BstACI	GRCGYC	5 cut(s)	243, 257, 285, 1743, 1880
BstAUI	TGTACA	2 cut(s)	1453, 1477
BstC8I	GCNNGC	6 cut(s)	273, 702, 1416, 1884, 1897, 1907
BstDEI	CTNAG	7 cut(s)	948, 966, 982, 1000, 1080, 1155, 1542
BstDSI	CCRYGG	2 cut(s)	526, 1632
BstEII	GGTNACC	1 cut(s)	521
BstF5I	GGATG	3 cut(s)	179, 232, 1140
BstH2I	RGCGCY	3 cut(s)	260, 1746, 1883
BstHHI	GCGC	6 cut(s)	259, 424, 659, 1516, 1745, 1882
BstKTI	GATC	8 cut(s)	121, 148, 965, 1039, 1099, 1181, 1498, 1540
BstMAI	GTCTC	1 cut(s)	1797
BstMBI	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
BstMWI	GCNNNNNNNGC	8 cut(s)	265, 343, 428, 656, 1135, 1522, 1790, 1892
BstNI	CCWGG	4 cut(s)	581, 1093, 1617, 1647
BstNSI	RCATGY	1 cut(s)	1430
BstPI	GGTNACC	1 cut(s)	521
BstSCI	CCNGG	6 cut(s)	238, 403, 579, 1091, 1615, 1645
BstSFI	CTRYAG	2 cut(s)	848, 1676
BstV1I	GCAGC	9 cut(s)	280, 355, 389, 601, 671, 826, 1118, 1369, 1802
BstV2I	GAAGAC	3 cut(s)	723, 1192, 1498
BstX2I	RGATCY	1 cut(s)	962
BstXI	CCANNNNNNTGG	3 cut(s)	533, 587, 1529
BstYI	RGATCY	1 cut(s)	962
Bsu36I	CCTNAGG	1 cut(s)	1542
BsuRI	GGCC	7 cut(s)	490, 513, 579, 1621, 1637, 1899, 1955
BtgI	CCRYGG	2 cut(s)	526, 1632
BtgZI	GCGATG	1 cut(s)	1718
BtrI	CACGTC	2 cut(s)	575, 1118
BtsCI	GGATG	3 cut(s)	179, 232, 1140
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	2 cut(s)	1056, 1812
BveI	ACCTGC	3 cut(s)	415, 841, 1492
Cac8I	GCNNGC	6 cut(s)	273, 702, 1416, 1884, 1897, 1907
CaiI	CAGNNNCTG	2 cut(s)	641, 1974
CciI	TCATGA	1 cut(s)	856
CfoI	GCGC	6 cut(s)	259, 424, 659, 1516, 1745, 1882
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	7 cut(s)	489, 511, 536, 691, 1546, 1619, 1898
CseI	GACGC	3 cut(s)	232, 293, 1374
Csp6I	GTAC	5 cut(s)	211, 644, 716, 1454, 1478
CviAII	CATG	9 cut(s)	317, 527, 533, 563, 857, 1406, 1427, 1451, 1838
CviQI	GTAC	5 cut(s)	211, 644, 716, 1454, 1478
DdeI	CTNAG	7 cut(s)	948, 966, 982, 1000, 1080, 1155, 1542
DinI	GGCGCC	3 cut(s)	258, 1744, 1881
DpnI	GATC	8 cut(s)	120, 147, 964, 1038, 1098, 1180, 1497, 1539
DpnII	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
DraI	TTTAAA	1 cut(s)	669
EaeI	YGGCCR	2 cut(s)	577, 1635
EciI	GGCGGA	2 cut(s)	252, 290
Eco130I	CCWWGG	2 cut(s)	526, 1690
Eco47I	GGWCC	3 cut(s)	536, 691, 1546
Eco57I	CTGAAG	6 cut(s)	666, 672, 1083, 1092, 1377, 1800
Eco81I	CCTNAGG	1 cut(s)	1542
Eco88I	CYCGRG	1 cut(s)	1110
Eco91I	GGTNACC	1 cut(s)	521
EcoO109I	RGGNCCY	3 cut(s)	489, 1546, 1619
EcoO65I	GGTNACC	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	1774
EcoRII	CCWGG	4 cut(s)	579, 1091, 1615, 1645
EcoT14I	CCWWGG	2 cut(s)	526, 1690
EgeI	GGCGCC	3 cut(s)	258, 1744, 1881
EheI	GGCGCC	3 cut(s)	258, 1744, 1881
ErhI	CCWWGG	2 cut(s)	526, 1690
FaeI	CATG	9 cut(s)	320, 530, 536, 566, 860, 1409, 1430, 1454, 1841
FalI	AAGNNNNNCTT	2 cut(s)	1914, 1946
FaqI	GGGAC	5 cut(s)	230, 585, 677, 1128, 1362
FatI	CATG	9 cut(s)	316, 526, 532, 562, 856, 1405, 1426, 1450, 1837
FauI	CCCGC	1 cut(s)	1618
FauNDI	CATATG	3 cut(s)	91, 1171, 1226
FokI	GGATG	3 cut(s)	166, 219, 1147
FspBI	CTAG	3 cut(s)	1190, 1298, 1700
GlaI	GCGC	6 cut(s)	258, 423, 658, 1515, 1744, 1881
GsaI	CCCAGC	1 cut(s)	1790
GsuI	CTGGAG	3 cut(s)	1599, 1629, 1942
HaeII	RGCGCY	3 cut(s)	260, 1746, 1883
HaeIII	GGCC	7 cut(s)	490, 513, 579, 1621, 1637, 1899, 1955
HapII	CCGG	5 cut(s)	240, 254, 272, 404, 1794
HgaI	GACGC	3 cut(s)	232, 293, 1374
HhaI	GCGC	6 cut(s)	259, 424, 659, 1516, 1745, 1882
Hin1I	GRCGYC	5 cut(s)	243, 257, 285, 1743, 1880
Hin1II	CATG	9 cut(s)	320, 530, 536, 566, 860, 1409, 1430, 1454, 1841
Hin6I	GCGC	6 cut(s)	257, 422, 657, 1514, 1743, 1880
HinP1I	GCGC	6 cut(s)	257, 422, 657, 1514, 1743, 1880
HincII	GTYRAC	3 cut(s)	787, 958, 1389
HindII	GTYRAC	3 cut(s)	787, 958, 1389
HindIII	AAGCTT	1 cut(s)	1065
HpaII	CCGG	5 cut(s)	240, 254, 272, 404, 1794
HphI	GGTGA	1 cut(s)	1390
Hpy166II	GTNNAC	5 cut(s)	773, 787, 958, 1389, 1478
Hpy188III	TCNNGA	6 cut(s)	247, 800, 857, 1182, 1309, 1541
Hpy8I	GTNNAC	5 cut(s)	773, 787, 958, 1389, 1478
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	7 cut(s)	108, 403, 468, 502, 647, 690, 1169
HpyCH4III	ACNGT	2 cut(s)	606, 1633
HpyCH4IV	ACGT	2 cut(s)	574, 1117
HpyF10VI	GCNNNNNNNGC	8 cut(s)	265, 343, 428, 656, 1135, 1522, 1790, 1892
HpyF3I	CTNAG	7 cut(s)	948, 966, 982, 1000, 1080, 1155, 1542
HpySE526I	ACGT	2 cut(s)	574, 1117
Hsp92I	GRCGYC	5 cut(s)	243, 257, 285, 1743, 1880
Hsp92II	CATG	9 cut(s)	320, 530, 536, 566, 860, 1409, 1430, 1454, 1841
HspAI	GCGC	6 cut(s)	257, 422, 657, 1514, 1743, 1880
KasI	GGCGCC	3 cut(s)	256, 1742, 1879
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Kzo9I	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
LmnI	GCTCC	2 cut(s)	1618, 1648
Lsp1109I	GCAGC	9 cut(s)	280, 355, 389, 601, 671, 826, 1118, 1369, 1802
LweI	GCATC	4 cut(s)	626, 647, 1125, 1934
MaeI	CTAG	3 cut(s)	1190, 1298, 1700
MaeII	ACGT	2 cut(s)	574, 1117
MaeIII	GTNAC	5 cut(s)	521, 1009, 1254, 1396, 1680
MalI	GATC	8 cut(s)	120, 147, 964, 1038, 1098, 1180, 1497, 1539
MbiI	CCGCTC	1 cut(s)	1613
MboI	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
MboII	GAAGA	7 cut(s)	723, 998, 1016, 1085, 1197, 1498, 1946
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	962
MlsI	TGGCCA	2 cut(s)	579, 1637
MluCI	AATT	9 cut(s)	105, 206, 352, 631, 843, 923, 1057, 1232, 1774
MluNI	TGGCCA	2 cut(s)	579, 1637
Mly113I	GGCGCC	3 cut(s)	257, 1743, 1880
MlyI	GAGTC	1 cut(s)	1262
MmeI	TCCRAC	1 cut(s)	306
Mox20I	TGGCCA	2 cut(s)	579, 1637
MroNI	GCCGGC	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	1854
MscI	TGGCCA	2 cut(s)	579, 1637
MseI	TTAA	3 cut(s)	668, 926, 1376
MslI	CAYNNNNRTG	3 cut(s)	531, 822, 1281
Msp20I	TGGCCA	2 cut(s)	579, 1637
MspA1I	CMGCKG	2 cut(s)	380, 650
MspI	CCGG	5 cut(s)	240, 254, 272, 404, 1794
MspR9I	CCNGG	6 cut(s)	240, 405, 581, 1093, 1617, 1647
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	2 cut(s)	307, 907
MvaI	CCWGG	4 cut(s)	581, 1093, 1617, 1647
MwoI	GCNNNNNNNGC	8 cut(s)	265, 343, 428, 656, 1135, 1522, 1790, 1892
NaeI	GCCGGC	1 cut(s)	273
NarI	GGCGCC	3 cut(s)	257, 1743, 1880
NciI	CCSGG	2 cut(s)	240, 405
NcoI	CCATGG	1 cut(s)	526
NdeI	CATATG	3 cut(s)	91, 1171, 1226
NdeII	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
NgoMIV	GCCGGC	1 cut(s)	271
NlaIII	CATG	9 cut(s)	320, 530, 536, 566, 860, 1409, 1430, 1454, 1841
NlaIV	GGNNCC	9 cut(s)	258, 512, 552, 693, 705, 1721, 1744, 1768, 1881
NmeAIII	GCCGAG	2 cut(s)	527, 1931
NmuCI	GTSAC	3 cut(s)	1254, 1396, 1680
NspI	RCATGY	1 cut(s)	1430
PagI	TCATGA	1 cut(s)	856
PciI	ACATGT	1 cut(s)	1426
PcsI	WCGNNNNNNNCGW	1 cut(s)	440
PctI	GAATGC	2 cut(s)	307, 907
PdiI	GCCGGC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	1854
PfeI	GAWTC	9 cut(s)	229, 250, 278, 331, 400, 1122, 1216, 1834, 1868
PflMI	CCANNNNNTGG	2 cut(s)	446, 938
PfoI	TCCNGGA	1 cut(s)	1645
PleI	GAGTC	1 cut(s)	1261
PluTI	GGCGCC	3 cut(s)	260, 1746, 1883
PpsI	GAGTC	1 cut(s)	1261
PpuMI	RGGWCCY	1 cut(s)	1546
PscI	ACATGT	1 cut(s)	1426
Psp5II	RGGWCCY	1 cut(s)	1546
Psp6I	CCWGG	4 cut(s)	579, 1091, 1615, 1645
PspEI	GGTNACC	1 cut(s)	521
PspFI	CCCAGC	1 cut(s)	1786
PspGI	CCWGG	4 cut(s)	579, 1091, 1615, 1645
PspN4I	GGNNCC	9 cut(s)	258, 512, 552, 693, 705, 1721, 1744, 1768, 1881
PspPI	GGNCC	7 cut(s)	489, 511, 536, 691, 1546, 1619, 1898
PspPPI	RGGWCCY	1 cut(s)	1546
PstI	CTGCAG	2 cut(s)	852, 1680
PstNI	CAGNNNCTG	2 cut(s)	641, 1974
PsuI	RGATCY	1 cut(s)	962
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	5 cut(s)	212, 645, 717, 1455, 1479
RsaNI	GTAC	5 cut(s)	211, 644, 716, 1454, 1478
RseI	CAYNNNNRTG	3 cut(s)	531, 822, 1281
SaqAI	TTAA	3 cut(s)	668, 926, 1376
Sau3AI	GATC	8 cut(s)	118, 145, 962, 1036, 1096, 1178, 1495, 1537
Sau96I	GGNCC	7 cut(s)	489, 511, 536, 691, 1546, 1619, 1898
SchI	GAGTC	1 cut(s)	1262
ScrFI	CCNGG	6 cut(s)	240, 405, 581, 1093, 1617, 1647
SfaNI	GCATC	4 cut(s)	626, 647, 1125, 1934
SfcI	CTRYAG	2 cut(s)	848, 1676
SfoI	GGCGCC	3 cut(s)	258, 1744, 1881
SinI	GGWCC	3 cut(s)	536, 691, 1546
SmiMI	CAYNNNNRTG	3 cut(s)	531, 822, 1281
SmlI	CTYRAG	2 cut(s)	809, 1307
SmoI	CTYRAG	2 cut(s)	809, 1307
SpeI	ACTAGT	1 cut(s)	1189
Sse9I	AATT	9 cut(s)	105, 206, 352, 631, 843, 923, 1057, 1232, 1774
SsiI	CCGC	9 cut(s)	263, 266, 275, 288, 380, 832, 1499, 1611, 1757
SspDI	GGCGCC	3 cut(s)	256, 1742, 1879
SspI	AATATT	2 cut(s)	167, 1657
SspMI	CTAG	3 cut(s)	1190, 1298, 1700
StyD4I	CCNGG	6 cut(s)	238, 403, 579, 1091, 1615, 1645
StyI	CCWWGG	2 cut(s)	526, 1690
TaaI	ACNGT	2 cut(s)	606, 1633
TaiI	ACGT	2 cut(s)	577, 1120
TaqI	TCGA	3 cut(s)	227, 620, 1147
TasI	AATT	9 cut(s)	105, 206, 352, 631, 843, 923, 1057, 1232, 1774
TatI	WGTACW	2 cut(s)	1453, 1477
TauI	GCSGC	4 cut(s)	268, 290, 835, 1759
TfiI	GAWTC	9 cut(s)	229, 250, 278, 331, 400, 1122, 1216, 1834, 1868
Tru1I	TTAA	3 cut(s)	668, 926, 1376
Tru9I	TTAA	3 cut(s)	668, 926, 1376
TscAI	CASTG	2 cut(s)	1056, 1819
TseFI	GTSAC	3 cut(s)	1254, 1396, 1680
TseI	GCWGC	9 cut(s)	268, 343, 377, 614, 659, 814, 1106, 1382, 1790
Tsp45I	GTSAC	3 cut(s)	1254, 1396, 1680
TspDTI	ATGAA	8 cut(s)	221, 729, 845, 936, 1044, 1188, 1213, 1826
TspGWI	ACGGA	2 cut(s)	975, 1836
TspRI	CASTG	2 cut(s)	1056, 1819
Van91I	CCANNNNNTGG	2 cut(s)	446, 938
VpaK11BI	GGWCC	3 cut(s)	536, 691, 1546
XapI	RAATTY	4 cut(s)	631, 843, 1057, 1774
XceI	RCATGY	1 cut(s)	1430
XmnI	GAANNNNTTC	1 cut(s)	1854
XspI	CTAG	3 cut(s)	1190, 1298, 1700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.