Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012660

Physical Location & Seq

Genomic Coordinates Reverse (-)

27014325 .. 27019206

Gene Structure 4882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00306230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1959 bp

ATGGATTACACCTACACACAAACCCCTCAACCTGACCCTAACCAATACCACCACCAATTCCAACCTCAACCTCAACAACCACCACCACCATATGACCCTTCAACAATTCAACCCTTTGATCCTCACTCATACTACTATTCCTATGATCCAAACCACCACTACCAATATTTCAATCCCACATCCCAAGATTACACCACTAACCCCCAATTGTACCAAGAACCCACTTCGATTCATCCTCCCGGCGTCCCGATTCCGGCGCCTCCGCCGCAGACGGCGGATTCCGACACAGCCCAGTTGCAGAATGCGTATTATGGACATGGGGTTGTGGAGAATCAGCGCCAGCAGCCAATCAATTCGGGTTCGGTTTCGGGTTCGGGTTCGAGTCAGGCACCGGTTTCGGAGATAACCCAGATTCCGGGGAAGGTGGAGGTGGTGCAGGTAGCCTCGCAACCACGGATTGGGCAAACTCCATATAGAGGTGGAGGAAGGAGGGGCAATAGGCCCTTCCGAGGGGGTGGTCGGGGCCATTTGGGTCATGGACCAGATGGCTCGGCACCACCTTTCCATGGTAGGGGACGTGGCCAGGGTGGTGGTAGGCACTTTCAACTGTATGGTGCTGCATCGAGCAATCCAAATTCAGCATCTGTACCAGCTGAAGGCGTAGCTGCTTTAAAGCAGTCGCCTTCAGCATTGGTCCCTTTGCAGGCACCATTACCTGTACCAACACAAGTGTCTTCTGCTTCATTCTGGCGACTTCCTCGTATGGCTTGGTGTGAACTTTGTAGGGTTGACTGCAACACTCTTGAAACCCTTGAGCAGCATAAAAATGGAAAGCGGCATAAAAAAATTCTGCAGGTTCATGAGGAGTTGCAGAAACACAACAAAGTCAATACTGAACAGCAGAATGCACAAATGCCCAACACTGAATTAAAACCAGAAGTTGGTCAGACTGAGAAAGTTGAGGGATCTGAGGAAAAGCAACCCTCAGAAGAAAAACTGACCTCTGAAGAAGTTACTGATGATAATAAAAATGAAACAGATCAAAGAGAAGCGGTGGGAAATTCTGAAGCTTCTGAAGAACCTGAGAACAAGTCCAGGGATCACTTTGCAGCTCGAGGACGTGGATCCAAGCGTAGGATGCGAGGGGGTCGAGGGGGTAAGTATATGAGGACATATGAAGGATCAAGAAGACTAGTTGAGCCTCCTAAACCCAAAGTGATTCCTTTCATATGTGAATTGTGCAATGTCAAGTGTGAGTCACAGGTGGTTTTTGATAGTCATTTGAGTGGTAAAAAGCACCTAGCAACCCTCAAGAGTCGCCCCTCATGTAGAGCAAGCCCCCCTCATGTAGAGCAAGTCGCCCCTCCTCATGTAGAGCAAGTCGCCCCTCCTCATGTACAGCAAGTTAGCCCTCCTCGTGTACAGCAAGGTGTCATTGATCCTCAGGTCTTCTTGGCCCAAGTCCAGCAAGGTGGCAATGATCCTGAGGTACTGTTGGGCAAACTATTGATGTCTTATATGCTCTCTAAAACCCAAGCACAAGAAATAGCACCTGCTCCGGGGCCTACATCTACCGTGGCTACAGCTCCAGGAACGAATATTGAAACTCAAAATCAACTGCAGTCACATATCCAAGGATTACTAGCGATGTGTCAAAATGGGTTCCAAAGCGCAGATATGGTGGGCGCCAAAAGTCAGCCGCAATCTGGCACCTTGAATTCTGAAGCCCCAGCGGCCAGAAACAGAGACACAAACACTGGGAATGGAACTTTGCAGATTCATGCAAAGGAGGAAAGTGTTCCTATAAATGATTCAGTTGTGGCGCCAGCAGAGAACGCAGGCCCAAGCAAGCAAGTTTCTGAAAAAGCATCACTTGAAGAATGTGAAGTTGGTGCCTCGGCTCCAGTTCAGCCAGAACCTGAATTCCAAATGCAAGGGCCAGAGTCCAAGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-met

Protein Analysis

652

Amino Acids

71.04

Weight (kDa)

6.38

Isoelectric Point (pI)

61.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-met	PF12874	409 - 433	1.9e-08	Zinc-finger of C2H2 type
zf-C2H2_jaz	PF12171	409 - 433	2.6e-06	Zinc-finger double-stranded RNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012660)

Species	Orthologous Gene IDs
malus_domestica	MD02G1210900.v1.1 MD07G1114400.v1.1
prunus_persica	Prupe.2G137000_v2.0.a1
pyrus_communis	pycom02g17390 pycom07g09930 pycom07g09940
rosa_chinensis	RchiOBHm_Chr1g0349021
rosa_laevigata	RLG00000028611
rosa_multiflora	Rmu_sc0009855.1_g000008 Rmu_sc0015786.1_g000001 Rmu_sc0038026.1_g000001
rosa_roxburghii	Rroxscaffold_4G00306230
rosa_rugosa	Rorug01G0199500
rosa_samantha	Rh1AG217100 Rh1BG182600 Rh1CG201500 Rh1DG212600
rosa_wichuraiana	Rw0G005390 Rw1G018460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1561
Acc36I	ACCTGC	3 cut(s)	427, 844, 1561
AccB1I	GGYRCC	8 cut(s)	256, 388, 553, 706, 1685, 1709, 1822, 1892
AccB7I	CCANNNNNTGG	2 cut(s)	458, 941
AciI	CCGC	7 cut(s)	263, 266, 275, 835, 1052, 1700, 1733
AclWI	GGATC	9 cut(s)	113, 140, 973, 1107, 1119, 1132, 1189, 1433, 1475
AcoI	YGGCCR	2 cut(s)	580, 1734
AcsI	RAATTY	5 cut(s)	634, 846, 1060, 1717, 1922
AcuI	CTGAAG	6 cut(s)	669, 675, 1026, 1086, 1095, 1743
AcyI	GRCGYC	4 cut(s)	243, 257, 1686, 1823
AfaI	GTAC	6 cut(s)	212, 648, 720, 1398, 1422, 1491
AgeI	ACCGGT	1 cut(s)	391
AgsI	TTSAA	8 cut(s)	102, 110, 172, 605, 806, 1604, 1717, 1877
AhlI	ACTAGT	1 cut(s)	1192
AjiI	CACGTC	2 cut(s)	578, 1121
AjnI	CCWGG	3 cut(s)	582, 1094, 1588
AjuI	GAANNNNNNNTTGG	2 cut(s)	1872, 1904
AloI	GAACNNNNNNTCC	2 cut(s)	1908, 1940
AluBI	AGCT	5 cut(s)	653, 665, 1070, 1112, 1586
AluI	AGCT	5 cut(s)	653, 665, 1070, 1112, 1586
Alw26I	GTCTC	1 cut(s)	1740
AlwI	GGATC	9 cut(s)	113, 140, 973, 1107, 1119, 1132, 1189, 1433, 1475
AlwNI	CAGNNNCTG	2 cut(s)	644, 1919
Ama87I	CYCGRG	1 cut(s)	1113
AoxI	GGCC	8 cut(s)	500, 523, 580, 1455, 1562, 1734, 1840, 1937
ApeKI	GCWGC	5 cut(s)	343, 617, 665, 817, 1109
ApoI	RAATTY	5 cut(s)	634, 846, 1060, 1717, 1922
AsiGI	ACCGGT	1 cut(s)	391
Asp700I	GAANNNNTTC	1 cut(s)	1797
AspLEI	GCGC	5 cut(s)	259, 339, 1673, 1688, 1825
AspS9I	GGNCC	8 cut(s)	501, 523, 539, 694, 1456, 1562, 1841, 1937
AsuC2I	CCSGG	3 cut(s)	240, 417, 1560
AvaI	CYCGRG	1 cut(s)	1113
AvaII	GGWCC	2 cut(s)	539, 694
AxyI	CCTNAGG	2 cut(s)	1443, 1485
BalI	TGGCCA	1 cut(s)	582
BamHI	GGATCC	1 cut(s)	1124
BanI	GGYRCC	8 cut(s)	256, 388, 553, 706, 1685, 1709, 1822, 1892
BauI	CACGAG	1 cut(s)	1416
BbsI	GAAGAC	3 cut(s)	726, 1195, 1441
BbvI	GCAGC	5 cut(s)	355, 604, 652, 829, 1121
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	1 cut(s)	288
BcgI	CGANNNNNNTGC	2 cut(s)	378, 412
BciT130I	CCWGG	3 cut(s)	584, 1096, 1590
BcnI	CCSGG	3 cut(s)	240, 417, 1560
BcoDI	GTCTC	1 cut(s)	1740
BcuI	ACTAGT	1 cut(s)	1192
BfaI	CTAG	3 cut(s)	1193, 1301, 1643
BfmI	CTRYAG	3 cut(s)	851, 1581, 1619
BfoI	RGCGCY	4 cut(s)	260, 340, 1689, 1826
BfuAI	ACCTGC	3 cut(s)	427, 844, 1561
BglI	GCCNNNNNGGC	1 cut(s)	1733
BisI	GCNGC	9 cut(s)	266, 344, 618, 666, 818, 836, 1110, 1700, 1734
BlsI	GCNGC	9 cut(s)	267, 345, 619, 667, 819, 837, 1111, 1701, 1735
Bme1390I	CCNGG	6 cut(s)	240, 417, 584, 1096, 1560, 1590
Bme18I	GGWCC	2 cut(s)	539, 694
BmeT110I	CYCGRG	1 cut(s)	1113
BmgBI	CACGTC	2 cut(s)	578, 1121
BmgT120I	GGNCC	8 cut(s)	501, 523, 539, 694, 1456, 1562, 1841, 1937
BmrFI	CCNGG	6 cut(s)	240, 417, 584, 1096, 1560, 1590
BmrI	ACTGGG	2 cut(s)	286, 1767
BmsI	GCATC	4 cut(s)	629, 650, 1128, 1877
BmuI	ACTGGG	2 cut(s)	286, 1767
BpiI	GAAGAC	3 cut(s)	726, 1195, 1441
BpmI	CTGGAG	2 cut(s)	1572, 1887
BpuEI	CTTGAG	2 cut(s)	833, 1295
BpuMI	CCSGG	3 cut(s)	240, 417, 1560
BsaHI	GRCGYC	4 cut(s)	243, 257, 1686, 1823
BsaWI	WCCGGW	1 cut(s)	391
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	3 cut(s)	292, 1762, 1904
Bse21I	CCTNAGG	2 cut(s)	1443, 1485
Bse3DI	GCAATG	2 cut(s)	1249, 1483
BseBI	CCWGG	3 cut(s)	584, 1096, 1590
BseGI	GGATG	3 cut(s)	179, 232, 1143
BseMI	GCAATG	2 cut(s)	1249, 1483
BseMII	CTCAG	6 cut(s)	942, 960, 999, 1074, 1457, 1476
BseNI	ACTGG	3 cut(s)	292, 1762, 1904
BseRI	GAGGAG	4 cut(s)	878, 1356, 1380, 1404
BseXI	GCAGC	5 cut(s)	355, 604, 652, 829, 1121
BseYI	CCCAGC	1 cut(s)	1729
BsgI	GTGCAG	1 cut(s)	455
BshFI	GGCC	8 cut(s)	502, 525, 582, 1457, 1564, 1736, 1842, 1939
BshNI	GGYRCC	8 cut(s)	256, 388, 553, 706, 1685, 1709, 1822, 1892
BshTI	ACCGGT	1 cut(s)	391
BsiHKCI	CYCGRG	1 cut(s)	1113
BsiSI	CCGG	5 cut(s)	240, 254, 392, 416, 1559
BslFI	GGGAC	3 cut(s)	230, 588, 680
BsmAI	GTCTC	1 cut(s)	1740
BsmFI	GGGAC	3 cut(s)	230, 588, 680
BsmI	GAATGC	2 cut(s)	307, 910
BsnI	GGCC	8 cut(s)	502, 525, 582, 1457, 1564, 1736, 1842, 1939
BsoBI	CYCGRG	1 cut(s)	1113
Bsp1407I	TGTACA	2 cut(s)	1396, 1420
Bsp143I	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
Bsp19I	CCATGG	1 cut(s)	565
BspACI	CCGC	7 cut(s)	263, 266, 275, 835, 1052, 1700, 1733
BspANI	GGCC	8 cut(s)	502, 525, 582, 1457, 1564, 1736, 1842, 1939
BspCNI	CTCAG	6 cut(s)	943, 961, 998, 1075, 1456, 1477
BspHI	TCATGA	1 cut(s)	859
BspMAI	CTGCAG	2 cut(s)	855, 1623
BspMI	ACCTGC	3 cut(s)	427, 844, 1561
BspPI	GGATC	9 cut(s)	113, 140, 973, 1107, 1119, 1132, 1189, 1433, 1475
BspT107I	GGYRCC	8 cut(s)	256, 388, 553, 706, 1685, 1709, 1822, 1892
BsrDI	GCAATG	2 cut(s)	1249, 1483
BsrFI	RCCGGY	1 cut(s)	391
BsrGI	TGTACA	2 cut(s)	1396, 1420
BsrI	ACTGG	3 cut(s)	292, 1762, 1904
BssAI	RCCGGY	1 cut(s)	391
BssMI	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
BssNI	GRCGYC	4 cut(s)	243, 257, 1686, 1823
BssSI	CACGAG	1 cut(s)	1416
BssT1I	CCWWGG	2 cut(s)	565, 1633
Bst2BI	CACGAG	1 cut(s)	1416
Bst2UI	CCWGG	3 cut(s)	584, 1096, 1590
Bst4CI	ACNGT	3 cut(s)	609, 1494, 1576
BstACI	GRCGYC	4 cut(s)	243, 257, 1686, 1823
BstAUI	TGTACA	2 cut(s)	1396, 1420
BstC8I	GCNNGC	6 cut(s)	341, 705, 1336, 1827, 1840, 1850
BstDEI	CTNAG	6 cut(s)	951, 969, 985, 1083, 1443, 1485
BstDSI	CCRYGG	3 cut(s)	452, 565, 1575
BstF5I	GGATG	3 cut(s)	179, 232, 1143
BstH2I	RGCGCY	4 cut(s)	260, 340, 1689, 1826
BstHHI	GCGC	5 cut(s)	259, 339, 1673, 1688, 1825
BstKTI	GATC	9 cut(s)	121, 148, 968, 1042, 1102, 1127, 1184, 1441, 1483
BstMAI	GTCTC	1 cut(s)	1740
BstMBI	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
BstMWI	GCNNNNNNNGC	5 cut(s)	265, 343, 1138, 1733, 1835
BstNI	CCWGG	3 cut(s)	584, 1096, 1590
BstSCI	CCNGG	6 cut(s)	238, 415, 582, 1094, 1558, 1588
BstSFI	CTRYAG	3 cut(s)	851, 1581, 1619
BstV1I	GCAGC	5 cut(s)	355, 604, 652, 829, 1121
BstV2I	GAAGAC	3 cut(s)	726, 1195, 1441
BstX2I	RGATCY	2 cut(s)	965, 1124
BstXI	CCANNNNNNTGG	2 cut(s)	590, 1472
BstYI	RGATCY	2 cut(s)	965, 1124
Bsu36I	CCTNAGG	2 cut(s)	1443, 1485
BsuRI	GGCC	8 cut(s)	502, 525, 582, 1457, 1564, 1736, 1842, 1939
BtgI	CCRYGG	3 cut(s)	452, 565, 1575
BtgZI	GCGATG	1 cut(s)	1661
BtrI	CACGTC	2 cut(s)	578, 1121
BtsCI	GGATG	3 cut(s)	179, 232, 1143
BtsIMutI	CAGTG	2 cut(s)	921, 1755
BveI	ACCTGC	3 cut(s)	427, 844, 1561
Cac8I	GCNNGC	6 cut(s)	341, 705, 1336, 1827, 1840, 1850
CaiI	CAGNNNCTG	2 cut(s)	644, 1919
CciI	TCATGA	1 cut(s)	859
CfoI	GCGC	5 cut(s)	259, 339, 1673, 1688, 1825
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	8 cut(s)	501, 523, 539, 694, 1456, 1562, 1841, 1937
CseI	GACGC	1 cut(s)	232
Csp6I	GTAC	6 cut(s)	211, 647, 719, 1397, 1421, 1490
CspAI	ACCGGT	1 cut(s)	391
CviAII	CATG	9 cut(s)	317, 536, 566, 860, 1326, 1346, 1370, 1394, 1781
CviQI	GTAC	6 cut(s)	211, 647, 719, 1397, 1421, 1490
DdeI	CTNAG	6 cut(s)	951, 969, 985, 1083, 1443, 1485
DinI	GGCGCC	3 cut(s)	258, 1687, 1824
DpnI	GATC	9 cut(s)	120, 147, 967, 1041, 1101, 1126, 1183, 1440, 1482
DpnII	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	2 cut(s)	580, 1734
EciI	GGCGGA	2 cut(s)	252, 290
Eco130I	CCWWGG	2 cut(s)	565, 1633
Eco47I	GGWCC	2 cut(s)	539, 694
Eco57I	CTGAAG	6 cut(s)	669, 675, 1026, 1086, 1095, 1743
Eco81I	CCTNAGG	2 cut(s)	1443, 1485
Eco88I	CYCGRG	1 cut(s)	1113
EcoO109I	RGGNCCY	2 cut(s)	501, 1562
EcoRI	GAATTC	2 cut(s)	1717, 1922
EcoRII	CCWGG	3 cut(s)	582, 1094, 1588
EcoT14I	CCWWGG	2 cut(s)	565, 1633
EgeI	GGCGCC	3 cut(s)	258, 1687, 1824
EheI	GGCGCC	3 cut(s)	258, 1687, 1824
ErhI	CCWWGG	2 cut(s)	565, 1633
FaeI	CATG	9 cut(s)	320, 539, 569, 863, 1329, 1349, 1373, 1397, 1784
FalI	AAGNNNNNCTT	2 cut(s)	1857, 1889
FaqI	GGGAC	3 cut(s)	230, 588, 680
FatI	CATG	9 cut(s)	316, 535, 565, 859, 1325, 1345, 1369, 1393, 1780
FauNDI	CATATG	3 cut(s)	91, 1174, 1229
Fnu4HI	GCNGC	9 cut(s)	266, 344, 618, 666, 818, 836, 1110, 1700, 1734
FokI	GGATG	3 cut(s)	166, 219, 1150
Fsp4HI	GCNGC	9 cut(s)	266, 344, 618, 666, 818, 836, 1110, 1700, 1734
FspBI	CTAG	3 cut(s)	1193, 1301, 1643
GlaI	GCGC	5 cut(s)	258, 338, 1672, 1687, 1824
GluI	GCNGC	9 cut(s)	266, 344, 618, 666, 818, 836, 1110, 1700, 1734
GsaI	CCCAGC	1 cut(s)	1733
GsuI	CTGGAG	2 cut(s)	1572, 1887
HaeII	RGCGCY	4 cut(s)	260, 340, 1689, 1826
HaeIII	GGCC	8 cut(s)	502, 525, 582, 1457, 1564, 1736, 1842, 1939
HapII	CCGG	5 cut(s)	240, 254, 392, 416, 1559
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	5 cut(s)	259, 339, 1673, 1688, 1825
Hin1I	GRCGYC	4 cut(s)	243, 257, 1686, 1823
Hin1II	CATG	9 cut(s)	320, 539, 569, 863, 1329, 1349, 1373, 1397, 1784
Hin6I	GCGC	5 cut(s)	257, 337, 1671, 1686, 1823
HinP1I	GCGC	5 cut(s)	257, 337, 1671, 1686, 1823
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	1068
HpaII	CCGG	5 cut(s)	240, 254, 392, 416, 1559
Hpy166II	GTNNAC	3 cut(s)	776, 790, 1421
Hpy188III	TCNNGA	6 cut(s)	247, 803, 860, 1185, 1312, 1484
Hpy8I	GTNNAC	3 cut(s)	776, 790, 1421
HpyAV	CCTTC	7 cut(s)	108, 415, 480, 514, 650, 693, 1172
HpyCH4III	ACNGT	3 cut(s)	609, 1494, 1576
HpyCH4IV	ACGT	2 cut(s)	577, 1120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	265, 343, 1138, 1733, 1835
HpyF3I	CTNAG	6 cut(s)	951, 969, 985, 1083, 1443, 1485
HpySE526I	ACGT	2 cut(s)	577, 1120
Hsp92I	GRCGYC	4 cut(s)	243, 257, 1686, 1823
Hsp92II	CATG	9 cut(s)	320, 539, 569, 863, 1329, 1349, 1373, 1397, 1784
HspAI	GCGC	5 cut(s)	257, 337, 1671, 1686, 1823
KasI	GGCGCC	3 cut(s)	256, 1685, 1822
Kzo9I	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
LmnI	GCTCC	3 cut(s)	1561, 1591, 1906
Lsp1109I	GCAGC	5 cut(s)	355, 604, 652, 829, 1121
LweI	GCATC	4 cut(s)	629, 650, 1128, 1877
MaeI	CTAG	3 cut(s)	1193, 1301, 1643
MaeII	ACGT	2 cut(s)	577, 1120
MaeIII	GTNAC	3 cut(s)	1012, 1257, 1623
MalI	GATC	9 cut(s)	120, 147, 967, 1041, 1101, 1126, 1183, 1440, 1482
MboI	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
MboII	GAAGA	7 cut(s)	726, 1001, 1019, 1088, 1200, 1441, 1889
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	2 cut(s)	965, 1124
MlsI	TGGCCA	1 cut(s)	582
MluNI	TGGCCA	1 cut(s)	582
Mly113I	GGCGCC	3 cut(s)	257, 1686, 1823
MlyI	GAGTC	4 cut(s)	391, 1265, 1324, 1952
MmeI	TCCRAC	2 cut(s)	85, 306
Mox20I	TGGCCA	1 cut(s)	582
MroXI	GAANNNNTTC	1 cut(s)	1797
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	2 cut(s)	671, 929
MslI	CAYNNNNRTG	2 cut(s)	825, 1284
Msp20I	TGGCCA	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	653, 1733
MspI	CCGG	5 cut(s)	240, 254, 392, 416, 1559
MspR9I	CCNGG	6 cut(s)	240, 417, 584, 1096, 1560, 1590
MunI	CAATTG	1 cut(s)	206
Mva1269I	GAATGC	2 cut(s)	307, 910
MvaI	CCWGG	3 cut(s)	584, 1096, 1590
MwoI	GCNNNNNNNGC	5 cut(s)	265, 343, 1138, 1733, 1835
NarI	GGCGCC	3 cut(s)	257, 1686, 1823
NciI	CCSGG	3 cut(s)	240, 417, 1560
NcoI	CCATGG	1 cut(s)	565
NdeI	CATATG	3 cut(s)	91, 1174, 1229
NdeII	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
NlaIII	CATG	9 cut(s)	320, 539, 569, 863, 1329, 1349, 1373, 1397, 1784
NmeAIII	GCCGAG	2 cut(s)	530, 1877
NmuCI	GTSAC	2 cut(s)	1257, 1623
PaeR7I	CTCGAG	1 cut(s)	1113
PagI	TCATGA	1 cut(s)	859
PaqCI	CACCTGC	1 cut(s)	1561
PctI	GAATGC	2 cut(s)	307, 910
PdmI	GAANNNNTTC	1 cut(s)	1797
PfeI	GAWTC	8 cut(s)	229, 250, 278, 331, 412, 1219, 1777, 1811
PflMI	CCANNNNNTGG	2 cut(s)	458, 941
PfoI	TCCNGGA	1 cut(s)	1588
PinAI	ACCGGT	1 cut(s)	391
PkrI	GCNGC	9 cut(s)	267, 345, 619, 667, 819, 837, 1111, 1701, 1735
PleI	GAGTC	4 cut(s)	390, 1264, 1323, 1951
PluTI	GGCGCC	3 cut(s)	260, 1689, 1826
PpsI	GAGTC	4 cut(s)	390, 1264, 1323, 1951
Psp6I	CCWGG	3 cut(s)	582, 1094, 1588
PspFI	CCCAGC	1 cut(s)	1729
PspGI	CCWGG	3 cut(s)	582, 1094, 1588
PspPI	GGNCC	8 cut(s)	501, 523, 539, 694, 1456, 1562, 1841, 1937
PspXI	VCTCGAGB	1 cut(s)	1113
PstI	CTGCAG	2 cut(s)	855, 1623
PstNI	CAGNNNCTG	2 cut(s)	644, 1919
PsuI	RGATCY	2 cut(s)	965, 1124
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	6 cut(s)	212, 648, 720, 1398, 1422, 1491
RsaNI	GTAC	6 cut(s)	211, 647, 719, 1397, 1421, 1490
RseI	CAYNNNNRTG	2 cut(s)	825, 1284
SaqAI	TTAA	2 cut(s)	671, 929
SatI	GCNGC	9 cut(s)	266, 344, 618, 666, 818, 836, 1110, 1700, 1734
Sau3AI	GATC	9 cut(s)	118, 145, 965, 1039, 1099, 1124, 1181, 1438, 1480
Sau96I	GGNCC	8 cut(s)	501, 523, 539, 694, 1456, 1562, 1841, 1937
SchI	GAGTC	4 cut(s)	391, 1265, 1324, 1952
ScrFI	CCNGG	6 cut(s)	240, 417, 584, 1096, 1560, 1590
SfaNI	GCATC	4 cut(s)	629, 650, 1128, 1877
SfcI	CTRYAG	3 cut(s)	851, 1581, 1619
SfoI	GGCGCC	3 cut(s)	258, 1687, 1824
Sfr274I	CTCGAG	1 cut(s)	1113
SinI	GGWCC	2 cut(s)	539, 694
SlaI	CTCGAG	1 cut(s)	1113
SmiMI	CAYNNNNRTG	2 cut(s)	825, 1284
SmlI	CTYRAG	3 cut(s)	812, 1113, 1310
SmoI	CTYRAG	3 cut(s)	812, 1113, 1310
SpeI	ACTAGT	1 cut(s)	1192
SsiI	CCGC	7 cut(s)	263, 266, 275, 835, 1052, 1700, 1733
SspDI	GGCGCC	3 cut(s)	256, 1685, 1822
SspI	AATATT	2 cut(s)	167, 1600
SspMI	CTAG	3 cut(s)	1193, 1301, 1643
StyD4I	CCNGG	6 cut(s)	238, 415, 582, 1094, 1558, 1588
StyI	CCWWGG	2 cut(s)	565, 1633
TaaI	ACNGT	3 cut(s)	609, 1494, 1576
TaiI	ACGT	2 cut(s)	580, 1123
TaqI	TCGA	5 cut(s)	227, 380, 623, 1114, 1150
TatI	WGTACW	2 cut(s)	1396, 1420
TauI	GCSGC	4 cut(s)	268, 838, 1702, 1736
TfiI	GAWTC	8 cut(s)	229, 250, 278, 331, 412, 1219, 1777, 1811
Tru1I	TTAA	2 cut(s)	671, 929
Tru9I	TTAA	2 cut(s)	671, 929
TscAI	CASTG	2 cut(s)	928, 1762
TseFI	GTSAC	2 cut(s)	1257, 1623
TseI	GCWGC	5 cut(s)	343, 617, 665, 817, 1109
Tsp45I	GTSAC	2 cut(s)	1257, 1623
TspDTI	ATGAA	7 cut(s)	221, 732, 848, 1047, 1191, 1216, 1769
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	2 cut(s)	928, 1762
Van91I	CCANNNNNTGG	2 cut(s)	458, 941
VpaK11BI	GGWCC	2 cut(s)	539, 694
XapI	RAATTY	5 cut(s)	634, 846, 1060, 1717, 1922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XhoI	CTCGAG	1 cut(s)	1113
XmnI	GAANNNNTTC	1 cut(s)	1797
XspI	CTAG	3 cut(s)	1193, 1301, 1643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.