Rmu_sc0038026.1_g000001

U1-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038026.1
OG0012660
Physical Location & Seq
Forward (+)
1 .. 1039
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038026.1_g000001.1.cds

Sequence Viewer

Length: 1039 bp
cactgaattaaaaccagaagttggtcagactgagaaagttgagggatctgaggaaaagcaaccctcagaagaaaaactgacctctgaagaagttactgatgataatagaaatgaaacagatcaaagagaagcggtgggaaattcggaagctcctgaagaacctgagaacaagtccagggatcactttgcagctcggggacgtggattcaagcgtaggatgcgagggggtcgagggggtaagtatatgaggacatatgaaggatcaagaagactagttgagcctcctaaacccaaagtgattcctttcatatgtgaattgtgcaatgtcaagtgtgagtcacaggtggtttttgatagtcatttgagtggtaaaaagcacctagcaaccctcaagaggtttcaaagccaccgtgctttgtatggagaacagggacttcaagcactttacccacctaacttaactgctgcgtcaacttcagtcgcccctcatgcagagcaagtcgcccctcctcatgtacagcaagttagccctcctcgtgtacagcaaggtgtcattgatcctcaggtcttcttggcccaagtccagcaaggtggcaatgatcctgaggtcctgttgggcaaactattgatgtcttatatgctctctaaaacccaagcacaagaaatagctcccgctccggggcctacatctaccatggctacagctccaggaacaaatattgaaactcaaaatcaactgcagtcacatatccaaggattactagcgatgtgtcaaaatgggttccaaagtgcagttatggtgggcgcgaaaagtcagccgcaatctggcaccttgaattctgaagccccagcagccggaaacacagacacaaacactgggaacggaactttgcagattcatgcaaaggaggaaagtgttcctataaatgattcagttgtggcgccagcagagaaggcaggcccaagcaagcaggtttctgaaaaagcatcacttgaagaatgtgaagttgcctcggcctccagttcagccagaacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-met

Protein Analysis

345

Amino Acids

37.11

Weight (kDa)

5.84

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 962
AccB1I GGYRCC 2 cut(s) 828, 941
AccB7I CCANNNNNTGG 1 cut(s) 21
AccBSI CCGCTC 1 cut(s) 675
AccII CGCG 1 cut(s) 807
AciI CCGC 3 cut(s) 132, 673, 819
AclWI GGATC 5 cut(s) 53, 187, 269, 552, 594
AcsI RAATTY 2 cut(s) 140, 836
AcuI CTGAAG 4 cut(s) 106, 175, 460, 862
AcyI GRCGYC 1 cut(s) 942
AfaI GTAC 2 cut(s) 517, 541
AfiI CCNNNNNNNGG 6 cut(s) 21, 394, 678, 679, 825, 855
AgsI TTSAA 6 cut(s) 209, 402, 438, 723, 836, 996
AhlI ACTAGT 1 cut(s) 272
AjiI CACGTC 1 cut(s) 201
AjnI CCWGG 2 cut(s) 174, 707
AluBI AGCT 4 cut(s) 150, 192, 669, 705
AluI AGCT 4 cut(s) 150, 192, 669, 705
AlwI GGATC 5 cut(s) 53, 187, 269, 552, 594
AlwNI CAGNNNCTG 1 cut(s) 1036
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 4 cut(s) 574, 681, 959, 1015
ApeKI GCWGC 3 cut(s) 189, 465, 852
ApoI RAATTY 2 cut(s) 140, 836
Asp700I GAANNNNTTC 1 cut(s) 916
AspLEI GCGC 2 cut(s) 807, 944
AspS9I GGNCC 4 cut(s) 575, 608, 681, 960
AsuC2I CCSGG 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 608
AxyI CCTNAGG 2 cut(s) 562, 604
BanI GGYRCC 2 cut(s) 828, 941
BauI CACGAG 1 cut(s) 535
BbsI GAAGAC 2 cut(s) 275, 560
BbvI GCAGC 3 cut(s) 201, 452, 864
BciT130I CCWGG 2 cut(s) 176, 709
BcnI CCSGG 1 cut(s) 679
BcuI ACTAGT 1 cut(s) 272
BfaI CTAG 3 cut(s) 273, 381, 762
BfmI CTRYAG 2 cut(s) 700, 738
BfoI RGCGCY 1 cut(s) 945
BfuAI ACCTGC 1 cut(s) 962
BisI GCNGC 4 cut(s) 190, 466, 819, 853
BlsI GCNGC 4 cut(s) 191, 467, 820, 854
Bme1390I CCNGG 3 cut(s) 176, 679, 709
Bme18I GGWCC 1 cut(s) 608
BmeT110I CYCGRG 1 cut(s) 193
BmgBI CACGTC 1 cut(s) 201
BmgT120I GGNCC 4 cut(s) 575, 608, 681, 960
BmiI GGNNCC 4 cut(s) 682, 783, 830, 943
BmrFI CCNGG 3 cut(s) 176, 679, 709
BmrI ACTGGG 1 cut(s) 886
BmsI GCATC 2 cut(s) 208, 996
BmuI ACTGGG 1 cut(s) 886
BpiI GAAGAC 2 cut(s) 275, 560
BpmI CTGGAG 2 cut(s) 691, 1004
BpuEI CTTGAG 1 cut(s) 375
BpuMI CCSGG 1 cut(s) 679
BsaHI GRCGYC 1 cut(s) 942
BsaJI CCNNGG 5 cut(s) 175, 678, 694, 752, 1012
Bsc4I CCNNNNNNNGG 6 cut(s) 21, 394, 678, 679, 825, 855
Bse1I ACTGG 2 cut(s) 881, 1021
Bse21I CCTNAGG 2 cut(s) 562, 604
Bse3DI GCAATG 2 cut(s) 329, 602
BseBI CCWGG 2 cut(s) 176, 709
BseDI CCNNGG 5 cut(s) 175, 678, 694, 752, 1012
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 6 cut(s) 21, 394, 678, 679, 825, 855
BseMI GCAATG 2 cut(s) 329, 602
BseMII CTCAG 6 cut(s) 22, 40, 79, 154, 576, 595
BseNI ACTGG 2 cut(s) 881, 1021
BseRI GAGGAG 2 cut(s) 499, 523
BseXI GCAGC 3 cut(s) 201, 452, 864
BseYI CCCAGC 1 cut(s) 848
BsgI GTGCAG 1 cut(s) 811
Bsh1236I CGCG 1 cut(s) 807
BshFI GGCC 4 cut(s) 576, 683, 961, 1017
BshNI GGYRCC 2 cut(s) 828, 941
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 2 cut(s) 678, 856
BslFI GGGAC 2 cut(s) 211, 445
BslI CCNNNNNNNGG 6 cut(s) 21, 394, 678, 679, 825, 855
BsmFI GGGAC 2 cut(s) 211, 445
BsnI GGCC 4 cut(s) 576, 683, 961, 1017
BsoBI CYCGRG 1 cut(s) 193
Bsp1407I TGTACA 2 cut(s) 515, 539
Bsp143I GATC 6 cut(s) 45, 119, 179, 261, 557, 599
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 3 cut(s) 132, 673, 819
BspANI GGCC 4 cut(s) 576, 683, 961, 1017
BspCNI CTCAG 6 cut(s) 23, 41, 78, 155, 575, 596
BspFNI CGCG 1 cut(s) 807
BspLI GGNNCC 4 cut(s) 682, 783, 830, 943
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 962
BspPI GGATC 5 cut(s) 53, 187, 269, 552, 594
BspT107I GGYRCC 2 cut(s) 828, 941
BsrBI CCGCTC 1 cut(s) 675
BsrDI GCAATG 2 cut(s) 329, 602
BsrGI TGTACA 2 cut(s) 515, 539
BsrI ACTGG 2 cut(s) 881, 1021
BssECI CCNNGG 5 cut(s) 175, 678, 694, 752, 1012
BssMI GATC 6 cut(s) 45, 119, 179, 261, 557, 599
BssNI GRCGYC 1 cut(s) 942
BssSI CACGAG 1 cut(s) 535
BssT1I CCWWGG 2 cut(s) 694, 752
Bst2BI CACGAG 1 cut(s) 535
Bst2UI CCWGG 2 cut(s) 176, 709
Bst4CI ACNGT 1 cut(s) 411
BstACI GRCGYC 1 cut(s) 942
BstAUI TGTACA 2 cut(s) 515, 539
BstC8I GCNNGC 3 cut(s) 946, 959, 969
BstDEI CTNAG 6 cut(s) 31, 49, 65, 163, 562, 604
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 807
BstH2I RGCGCY 1 cut(s) 945
BstHHI GCGC 2 cut(s) 807, 944
BstKTI GATC 6 cut(s) 48, 122, 182, 264, 560, 602
BstMBI GATC 6 cut(s) 45, 119, 179, 261, 557, 599
BstMWI GCNNNNNNNGC 4 cut(s) 218, 489, 852, 954
BstNI CCWGG 2 cut(s) 176, 709
BstSCI CCNGG 3 cut(s) 174, 677, 707
BstSFI CTRYAG 2 cut(s) 700, 738
BstUI CGCG 1 cut(s) 807
BstV1I GCAGC 3 cut(s) 201, 452, 864
BstV2I GAAGAC 2 cut(s) 275, 560
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 591
BstYI RGATCY 1 cut(s) 45
Bsu36I CCTNAGG 2 cut(s) 562, 604
BsuRI GGCC 4 cut(s) 576, 683, 961, 1017
BtgI CCRYGG 1 cut(s) 694
BtgZI GCGATG 1 cut(s) 780
BtrI CACGTC 1 cut(s) 201
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 874
BveI ACCTGC 1 cut(s) 962
Cac8I GCNNGC 3 cut(s) 946, 959, 969
CaiI CAGNNNCTG 1 cut(s) 1036
CfoI GCGC 2 cut(s) 807, 944
Cfr13I GGNCC 4 cut(s) 575, 608, 681, 960
CseI GACGC 1 cut(s) 457
Csp6I GTAC 2 cut(s) 516, 540
CviAII CATG 4 cut(s) 489, 513, 695, 900
CviQI GTAC 2 cut(s) 516, 540
DdeI CTNAG 6 cut(s) 31, 49, 65, 163, 562, 604
DinI GGCGCC 1 cut(s) 943
DpnI GATC 6 cut(s) 47, 121, 181, 263, 559, 601
DpnII GATC 6 cut(s) 45, 119, 179, 261, 557, 599
Eco130I CCWWGG 2 cut(s) 694, 752
Eco47I GGWCC 1 cut(s) 608
Eco57I CTGAAG 4 cut(s) 106, 175, 460, 862
Eco81I CCTNAGG 2 cut(s) 562, 604
Eco88I CYCGRG 1 cut(s) 193
EcoO109I RGGNCCY 2 cut(s) 608, 681
EcoRI GAATTC 1 cut(s) 836
EcoRII CCWGG 2 cut(s) 174, 707
EcoT14I CCWWGG 2 cut(s) 694, 752
EgeI GGCGCC 1 cut(s) 943
EheI GGCGCC 1 cut(s) 943
ErhI CCWWGG 2 cut(s) 694, 752
FaeI CATG 4 cut(s) 492, 516, 698, 903
FalI AAGNNNNNCTT 2 cut(s) 976, 1008
FaqI GGGAC 2 cut(s) 211, 445
FatI CATG 4 cut(s) 488, 512, 694, 899
FauI CCCGC 1 cut(s) 680
FauNDI CATATG 2 cut(s) 254, 309
Fnu4HI GCNGC 4 cut(s) 190, 466, 819, 853
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 4 cut(s) 190, 466, 819, 853
FspBI CTAG 3 cut(s) 273, 381, 762
GlaI GCGC 2 cut(s) 806, 943
GluI GCNGC 4 cut(s) 190, 466, 819, 853
GsaI CCCAGC 1 cut(s) 852
GsuI CTGGAG 2 cut(s) 691, 1004
HaeII RGCGCY 1 cut(s) 945
HaeIII GGCC 4 cut(s) 576, 683, 961, 1017
HapII CCGG 2 cut(s) 678, 856
HgaI GACGC 1 cut(s) 457
HhaI GCGC 2 cut(s) 807, 944
Hin1I GRCGYC 1 cut(s) 942
Hin1II CATG 4 cut(s) 492, 516, 698, 903
Hin6I GCGC 2 cut(s) 805, 942
HinP1I GCGC 2 cut(s) 805, 942
HincII GTYRAC 1 cut(s) 472
HindII GTYRAC 1 cut(s) 472
HinfI GANTC 5 cut(s) 205, 299, 336, 896, 930
HpaII CCGG 2 cut(s) 678, 856
Hpy166II GTNNAC 2 cut(s) 472, 540
Hpy188I TCNGA 7 cut(s) 28, 50, 68, 86, 146, 842, 980
Hpy188III TCNNGA 4 cut(s) 153, 265, 392, 603
Hpy8I GTNNAC 2 cut(s) 472, 540
HpyAV CCTTC 2 cut(s) 252, 947
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 7 cut(s) 189, 322, 492, 740, 792, 893, 903
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 489, 852, 954
HpyF3I CTNAG 6 cut(s) 31, 49, 65, 163, 562, 604
HpySE526I ACGT 1 cut(s) 200
Hsp92I GRCGYC 1 cut(s) 942
Hsp92II CATG 4 cut(s) 492, 516, 698, 903
HspAI GCGC 2 cut(s) 805, 942
KasI GGCGCC 1 cut(s) 941
Kzo9I GATC 6 cut(s) 45, 119, 179, 261, 557, 599
LmnI GCTCC 4 cut(s) 155, 674, 680, 710
Lsp1109I GCAGC 3 cut(s) 201, 452, 864
LweI GCATC 2 cut(s) 208, 996
MaeI CTAG 3 cut(s) 273, 381, 762
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 3 cut(s) 92, 337, 742
MalI GATC 6 cut(s) 47, 121, 181, 263, 559, 601
MbiI CCGCTC 1 cut(s) 675
MboI GATC 6 cut(s) 45, 119, 179, 261, 557, 599
MboII GAAGA 6 cut(s) 81, 99, 168, 280, 560, 1008
MflI RGATCY 1 cut(s) 45
MluCI AATT 4 cut(s) 6, 140, 315, 836
Mly113I GGCGCC 1 cut(s) 942
MlyI GAGTC 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 916
MseI TTAA 2 cut(s) 9, 459
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 2 cut(s) 678, 856
MspR9I CCNGG 3 cut(s) 176, 679, 709
MvaI CCWGG 2 cut(s) 176, 709
MvnI CGCG 1 cut(s) 807
MwoI GCNNNNNNNGC 4 cut(s) 218, 489, 852, 954
NarI GGCGCC 1 cut(s) 942
NciI CCSGG 1 cut(s) 679
NcoI CCATGG 1 cut(s) 694
NdeI CATATG 2 cut(s) 254, 309
NdeII GATC 6 cut(s) 45, 119, 179, 261, 557, 599
NlaIII CATG 4 cut(s) 492, 516, 698, 903
NlaIV GGNNCC 4 cut(s) 682, 783, 830, 943
NmeAIII GCCGAG 1 cut(s) 993
NmuCI GTSAC 2 cut(s) 337, 742
PdmI GAANNNNTTC 1 cut(s) 916
PfeI GAWTC 4 cut(s) 205, 299, 896, 930
PflMI CCANNNNNTGG 1 cut(s) 21
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 4 cut(s) 191, 467, 820, 854
PleI GAGTC 1 cut(s) 344
PluTI GGCGCC 1 cut(s) 945
PpsI GAGTC 1 cut(s) 344
PpuMI RGGWCCY 1 cut(s) 608
Psp5II RGGWCCY 1 cut(s) 608
Psp6I CCWGG 2 cut(s) 174, 707
PspFI CCCAGC 1 cut(s) 848
PspGI CCWGG 2 cut(s) 174, 707
PspN4I GGNNCC 4 cut(s) 682, 783, 830, 943
PspPI GGNCC 4 cut(s) 575, 608, 681, 960
PspPPI RGGWCCY 1 cut(s) 608
PstI CTGCAG 1 cut(s) 742
PstNI CAGNNNCTG 1 cut(s) 1036
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 517, 541
RsaNI GTAC 2 cut(s) 516, 540
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 2 cut(s) 9, 459
SatI GCNGC 4 cut(s) 190, 466, 819, 853
Sau3AI GATC 6 cut(s) 45, 119, 179, 261, 557, 599
Sau96I GGNCC 4 cut(s) 575, 608, 681, 960
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 3 cut(s) 176, 679, 709
SfaNI GCATC 2 cut(s) 208, 996
SfcI CTRYAG 2 cut(s) 700, 738
SfoI GGCGCC 1 cut(s) 943
SinI GGWCC 1 cut(s) 608
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
SpeI ACTAGT 1 cut(s) 272
Sse9I AATT 4 cut(s) 6, 140, 315, 836
SsiI CCGC 3 cut(s) 132, 673, 819
SspDI GGCGCC 1 cut(s) 941
SspI AATATT 1 cut(s) 719
SspMI CTAG 3 cut(s) 273, 381, 762
StyD4I CCNGG 3 cut(s) 174, 677, 707
StyI CCWWGG 2 cut(s) 694, 752
TaaI ACNGT 1 cut(s) 411
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 230
TasI AATT 4 cut(s) 6, 140, 315, 836
TatI WGTACW 2 cut(s) 515, 539
TauI GCSGC 1 cut(s) 821
TfiI GAWTC 4 cut(s) 205, 299, 896, 930
Tru1I TTAA 2 cut(s) 9, 459
Tru9I TTAA 2 cut(s) 9, 459
TscAI CASTG 1 cut(s) 881
TseFI GTSAC 2 cut(s) 337, 742
TseI GCWGC 3 cut(s) 189, 465, 852
Tsp45I GTSAC 2 cut(s) 337, 742
TspDTI ATGAA 4 cut(s) 127, 271, 296, 888
TspGWI ACGGA 1 cut(s) 898
TspRI CASTG 1 cut(s) 881
Van91I CCANNNNNTGG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 608
XapI RAATTY 2 cut(s) 140, 836
XmnI GAANNNNTTC 1 cut(s) 916
XspI CTAG 3 cut(s) 273, 381, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.