pycom07g16470

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0011310
Physical Location & Seq
Forward (+)
18907128 .. 18910182
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
ATGGACAAAATTAAAACTAAACTACAGGGAAATTGCTCTGACCTTACTCGGATTCAGAATTCCCGGGAAATAGACTTCCCAGAAAAACAAGGGAAAACTTTTCTATTGATTCCATCTCCCCCAAAACCCACGATGAAGTTCGAAAGATTCCTGTCAATCCCAATCTTTATGGTGATTTTGTTAATTGGTACTGTGTGTTACATCACGGTTTTCATCTTCATCGACGGTTGGGTTGGATTGAAGAGCTCCGCTGGTTCTTTGAACGCTCTGGTTTTCATTTCCTTGGCATCTCTCTGCCTCTTCTCCTTCTTTTGCTGTGTTCTCATCGACCCAGGTCACGTTCCTGCTTCCTACGTCCCTGATGTTGAACATAGTGTGGTCTCCGATCAAGAATCTAAGAAAAATGTTCGCTGTGACAAGTGTTCTACATTCAAGCCTCCCAGAACTCATCATTGCCGGGTCTGCAGAAGGTGTGTTTTAAGAATGGATCATCACTGCATGTGGATCAATAACTGTGTTGGTTACTGGAACTACAAGGCATTTTTTATGCTTGTTTTATATGCAACGCTAGGATGCCTGTACTCTACAGTTATGATTATAAAGTGTGTATCTCAAAAGGACTTCGAATTCATTGCAAGTGATAGCCACAAGATTTTTTATGTTATGTCTGGTCTAGTGATGGCTTCCTTGACGGTAATGCTTGGAGCTCTTTTAGGTTGGCATATCTACCTCATAACCAATAATATGACAACTATAGAGTATTATGAAGGAATACGGGCAGCATGGTTAGCTGGGAAATCTGGGAAAAGTTACAGACATCCATACAATCTTAGTGTACACAAAAACATCTCTTCGGTTTTGGGTCCAAGTATGCTGAAATGGTTATGTCCGACATCAGTAGGCCATCTAAAAGATGGACTCATCTTCCCTACTCCGCGTGATAGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DHHC

Protein Analysis

317

Amino Acids

35.74

Weight (kDa)

9.03

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 133 - 256 4.2e-36 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 599
AccII CGCG 1 cut(s) 937
AciI CCGC 2 cut(s) 249, 935
AclWI GGATC 2 cut(s) 495, 512
AcsI RAATTY 2 cut(s) 58, 626
AfaI GTAC 3 cut(s) 190, 581, 837
AgsI TTSAA 4 cut(s) 241, 262, 368, 433
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 3 cut(s) 246, 707, 791
AluI AGCT 3 cut(s) 246, 707, 791
Alw21I GWGCWC 2 cut(s) 248, 709
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 495, 512
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 901
ApeKI GCWGC 1 cut(s) 779
ApoI RAATTY 2 cut(s) 58, 626
AspS9I GGNCC 1 cut(s) 863
AsuC2I CCSGG 3 cut(s) 64, 65, 458
AsuHPI GGTGA 1 cut(s) 184
AsuII TTCGAA 2 cut(s) 141, 624
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 863
BanII GRGCYC 2 cut(s) 248, 709
Bbv12I GWGCWC 2 cut(s) 248, 709
BbvI GCAGC 1 cut(s) 791
BccI CCATC 4 cut(s) 121, 673, 908, 912
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 333
BcnI CCSGG 3 cut(s) 64, 65, 458
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 2 cut(s) 569, 674
BfmI CTRYAG 4 cut(s) 23, 463, 585, 753
BisI GCNGC 1 cut(s) 780
BlsI GCNGC 1 cut(s) 781
Bme1390I CCNGG 4 cut(s) 64, 65, 333, 458
Bme18I GGWCC 1 cut(s) 863
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 863
BmiI GGNNCC 1 cut(s) 864
BmrFI CCNGG 4 cut(s) 64, 65, 333, 458
BmsI GCATC 2 cut(s) 296, 563
BoxI GACNNNNGTC 1 cut(s) 333
Bpu14I TTCGAA 2 cut(s) 141, 624
BpuMI CCSGG 3 cut(s) 64, 65, 458
BsaI GGTCTC 1 cut(s) 385
BsaJI CCNNGG 3 cut(s) 63, 282, 331
Bse1I ACTGG 1 cut(s) 530
Bse3DI GCAATG 2 cut(s) 451, 630
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 3 cut(s) 63, 282, 331
BseGI GGATG 2 cut(s) 578, 817
BseMI GCAATG 2 cut(s) 451, 630
BseNI ACTGG 1 cut(s) 530
BseXI GCAGC 1 cut(s) 791
BseYI CCCAGC 1 cut(s) 791
Bsh1236I CGCG 1 cut(s) 937
BshFI GGCC 1 cut(s) 903
BsiHKAI GWGCWC 2 cut(s) 248, 709
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 64, 457
BslFI GGGAC 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 341
BsnI GGCC 1 cut(s) 903
Bso31I GGTCTC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 63
Bsp119I TTCGAA 2 cut(s) 141, 624
Bsp1286I GDGCHC 2 cut(s) 248, 709
Bsp1407I TGTACA 1 cut(s) 835
Bsp143I GATC 3 cut(s) 385, 487, 504
BspACI CCGC 2 cut(s) 249, 935
BspANI GGCC 1 cut(s) 903
BspFNI CGCG 1 cut(s) 937
BspHI TCATGA 1 cut(s) 947
BspLI GGNNCC 1 cut(s) 864
BspMAI CTGCAG 1 cut(s) 467
BspPI GGATC 2 cut(s) 495, 512
BspQI GCTCTTC 1 cut(s) 236
BspT104I TTCGAA 2 cut(s) 141, 624
BspTNI GGTCTC 1 cut(s) 385
BsrDI GCAATG 2 cut(s) 451, 630
BsrGI TGTACA 1 cut(s) 835
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 3 cut(s) 63, 282, 331
BssMI GATC 3 cut(s) 385, 487, 504
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 6 cut(s) 193, 208, 227, 515, 589, 694
Bst6I CTCTTC 3 cut(s) 236, 305, 856
BstAUI TGTACA 1 cut(s) 835
BstBI TTCGAA 2 cut(s) 141, 624
BstDEI CTNAG 2 cut(s) 396, 830
BstF5I GGATG 2 cut(s) 578, 817
BstFNI CGCG 1 cut(s) 937
BstKTI GATC 3 cut(s) 388, 490, 507
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 3 cut(s) 385, 487, 504
BstMWI GCNNNNNNNGC 2 cut(s) 462, 788
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 502
BstPAI GACNNNNGTC 1 cut(s) 333
BstSCI CCNGG 4 cut(s) 62, 63, 331, 456
BstSFI CTRYAG 4 cut(s) 23, 463, 585, 753
BstUI CGCG 1 cut(s) 937
BstV1I GCAGC 1 cut(s) 791
BsuRI GGCC 1 cut(s) 903
BtsCI GGATG 2 cut(s) 578, 817
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 493
CciI TCATGA 1 cut(s) 947
Cfr13I GGNCC 1 cut(s) 863
Cfr9I CCCGGG 1 cut(s) 63
Csp6I GTAC 3 cut(s) 189, 580, 836
CviAII CATG 3 cut(s) 499, 783, 948
CviJI RGCY 7 cut(s) 246, 436, 645, 683, 707, 791, 903
CviKI_1 RGCY 7 cut(s) 246, 436, 645, 683, 707, 791, 903
CviQI GTAC 3 cut(s) 189, 580, 836
DdeI CTNAG 2 cut(s) 396, 830
DpnI GATC 3 cut(s) 387, 489, 506
DpnII GATC 3 cut(s) 385, 487, 504
Eam1104I CTCTTC 3 cut(s) 236, 305, 856
EarI CTCTTC 3 cut(s) 236, 305, 856
Ecl136II GAGCTC 2 cut(s) 246, 707
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 248, 709
Eco31I GGTCTC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 863
Eco53kI GAGCTC 2 cut(s) 246, 707
Eco88I CYCGRG 1 cut(s) 63
EcoICRI GAGCTC 2 cut(s) 246, 707
EcoRI GAATTC 2 cut(s) 58, 626
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 2 cut(s) 248, 709
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 3 cut(s) 502, 786, 951
FaqI GGGAC 1 cut(s) 341
FatI CATG 3 cut(s) 498, 782, 947
Fnu4HI GCNGC 1 cut(s) 780
FokI GGATG 2 cut(s) 585, 804
FriOI GRGCYC 2 cut(s) 248, 709
Fsp4HI GCNGC 1 cut(s) 780
FspBI CTAG 2 cut(s) 569, 674
GluI GCNGC 1 cut(s) 780
GsaI CCCAGC 1 cut(s) 795
HaeIII GGCC 1 cut(s) 903
HapII CCGG 2 cut(s) 64, 457
Hin1II CATG 3 cut(s) 502, 786, 951
HinfI GANTC 5 cut(s) 52, 109, 147, 392, 918
HpaII CCGG 2 cut(s) 64, 457
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 836, 838
Hpy188I TCNGA 5 cut(s) 40, 51, 57, 385, 891
Hpy188III TCNNGA 2 cut(s) 389, 948
Hpy8I GTNNAC 2 cut(s) 836, 838
Hpy99I CGWCG 1 cut(s) 227
HpyAV CCTTC 3 cut(s) 316, 462, 761
HpyCH4III ACNGT 6 cut(s) 193, 208, 227, 515, 589, 694
HpyCH4IV ACGT 2 cut(s) 339, 354
HpyCH4V TGCA 4 cut(s) 465, 498, 563, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 462, 788
HpyF3I CTNAG 2 cut(s) 396, 830
HpySE526I ACGT 2 cut(s) 339, 354
Hsp92II CATG 3 cut(s) 502, 786, 951
Kzo9I GATC 3 cut(s) 385, 487, 504
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 251, 704
Lsp1109I GCAGC 1 cut(s) 791
LweI GCATC 2 cut(s) 296, 563
MaeI CTAG 2 cut(s) 569, 674
MaeII ACGT 2 cut(s) 339, 354
MaeIII GTNAC 5 cut(s) 197, 335, 413, 521, 809
MalI GATC 3 cut(s) 387, 489, 506
MboI GATC 3 cut(s) 385, 487, 504
MboII GAAGA 5 cut(s) 208, 253, 292, 843, 916
MhlI GDGCHC 2 cut(s) 248, 709
MluCI AATT 5 cut(s) 9, 31, 58, 183, 626
MlyI GAGTC 1 cut(s) 912
MmeI TCCRAC 2 cut(s) 214, 914
MnlI CCTC 3 cut(s) 308, 447, 740
MseI TTAA 3 cut(s) 12, 182, 479
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 2 cut(s) 64, 457
MspR9I CCNGG 4 cut(s) 64, 65, 333, 458
MvaI CCWGG 1 cut(s) 333
MvnI CGCG 1 cut(s) 937
MwoI GCNNNNNNNGC 2 cut(s) 462, 788
NciI CCSGG 3 cut(s) 64, 65, 458
NdeII GATC 3 cut(s) 385, 487, 504
NlaIII CATG 3 cut(s) 502, 786, 951
NlaIV GGNNCC 1 cut(s) 864
NmuCI GTSAC 2 cut(s) 335, 413
NspI RCATGY 1 cut(s) 502
NspV TTCGAA 2 cut(s) 141, 624
PagI TCATGA 1 cut(s) 947
PciSI GCTCTTC 1 cut(s) 236
PfeI GAWTC 4 cut(s) 52, 109, 147, 392
PkrI GCNGC 1 cut(s) 781
PleI GAGTC 1 cut(s) 912
PpsI GAGTC 1 cut(s) 912
PshAI GACNNNNGTC 1 cut(s) 333
PsiI TTATAA 1 cut(s) 599
Psp124BI GAGCTC 2 cut(s) 248, 709
Psp6I CCWGG 1 cut(s) 331
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 1 cut(s) 864
PspPI GGNCC 1 cut(s) 863
PstI CTGCAG 1 cut(s) 467
RsaI GTAC 3 cut(s) 190, 581, 837
RsaNI GTAC 3 cut(s) 189, 580, 836
SacI GAGCTC 2 cut(s) 248, 709
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 12, 182, 479
SatI GCNGC 1 cut(s) 780
Sau3AI GATC 3 cut(s) 385, 487, 504
Sau96I GGNCC 1 cut(s) 863
SchI GAGTC 1 cut(s) 912
ScrFI CCNGG 4 cut(s) 64, 65, 333, 458
SduI GDGCHC 2 cut(s) 248, 709
SfaNI GCATC 2 cut(s) 296, 563
SfcI CTRYAG 4 cut(s) 23, 463, 585, 753
SfuI TTCGAA 2 cut(s) 141, 624
SinI GGWCC 1 cut(s) 863
SmaI CCCGGG 1 cut(s) 65
Sse9I AATT 5 cut(s) 9, 31, 58, 183, 626
SsiI CCGC 2 cut(s) 249, 935
SspMI CTAG 2 cut(s) 569, 674
SstI GAGCTC 2 cut(s) 248, 709
StyD4I CCNGG 4 cut(s) 62, 63, 331, 456
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 6 cut(s) 193, 208, 227, 515, 589, 694
TaiI ACGT 2 cut(s) 342, 357
TaqI TCGA 4 cut(s) 141, 222, 327, 624
TasI AATT 5 cut(s) 9, 31, 58, 183, 626
TatI WGTACW 2 cut(s) 579, 835
TfiI GAWTC 4 cut(s) 52, 109, 147, 392
Tru1I TTAA 3 cut(s) 12, 182, 479
Tru9I TTAA 3 cut(s) 12, 182, 479
TscAI CASTG 1 cut(s) 500
TseFI GTSAC 2 cut(s) 335, 413
TseI GCWGC 1 cut(s) 779
Tsp45I GTSAC 2 cut(s) 335, 413
TspDTI ATGAA 7 cut(s) 149, 202, 208, 265, 619, 780, 936
TspMI CCCGGG 1 cut(s) 63
TspRI CASTG 1 cut(s) 500
VpaK11BI GGWCC 1 cut(s) 863
XapI RAATTY 2 cut(s) 58, 626
XceI RCATGY 1 cut(s) 502
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XmaI CCCGGG 1 cut(s) 63
XspI CTAG 2 cut(s) 569, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.