Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003169

Physical Location & Seq

Genomic Coordinates Forward (+)

21909777 .. 21911101

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGGCCACCATGGCTTGCTGCTCATCCGCCAGGGCGTTCCTGCCGGCTGCCGGCGTTGTGAGTCACCAGCATTCCACTTCACTTGTGGCTCCATCTTTTAGCTCCAAGACCCTAAAATCAAGCTCCCTCTTCGGAGAATCACTACGACAAGTGCCACGATCATCGCTCAAGGTTTCCAAGACAAAACATTTTACTCATGTGACAAAATGTGCAATCGGTGATAGCCTGGAGGAGTTTCTTGCAAAGGCAACCCCGGATAAGGGTCTGATCCGGTTGCTGATAAGCATGGGAGAAGCACTGAGGACTATTTCCTTCAAGGTCAGAACAGCTGCTTGTGGAGGAACGGCCTGCATTAATTCTTTCGGGGATGAGCAGCTCGCCGTGGATATGCTTGCTGACAAGCTTTTGTTTGAGGCCTTAAGTTACTCGCATGTCTGCAAATACGCTTGCTCTGAAGAGGTTCCGGAACTCCAAGACATGGGAGGCCCAATTGAAGGTGGATTTAGTGTTGCTTTTGATCCGCTCGATGGCTCCAGCATTGTCGACACCAACTTCACTGTAGGCACCATCTTTGGTGTGTGGCCAGGAGATAAGTTAACTGGGGTAACAGGAAGAGACCAAGTTGCTGCAGCCATGGGAATTTACGGTCCTAGAAATACATATGTTCTTGCTATCAAGGGCTTCCCTGGAACCCACGAATTTCTTCTTCTCGATGAAGGTAAGATCGTAACAACATTACCCAAAAAAAAAAATTTGTTCTTCCTGTTACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009311 GO:0009312 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015977 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019252 GO:0019253 GO:0019318 GO:0019319 GO:0019637 GO:0019685 GO:0030388 GO:0031967 GO:0031975 GO:0033692 GO:0034637 GO:0034645 GO:0042132 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050278 GO:0050308 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

FBPase

Protein Analysis

259

Amino Acids

27.54

Weight (kDa)

6.99

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55800
fragaria_vesca	FvH4_3g15380 FvH4_7g23960
malus_domestica	MD01G1146300.v1.1 MD05G1223500.v1.1 MD07G1213200.v1.1 MD10G1204900.v1.1 MD10G1205000.v1.1
prunus_persica	Prupe.2G245700_v2.0.a1 Prupe.2G245700_v2.0.a1 Prupe.4G136700_v2.0.a1
pyrus_communis	pycom01g16550 pycom05g20640 pycom07g19600 pycom10g17540
rosa_chinensis	RchiOBHm_Chr1g0369301 RchiOBHm_Chr5g0025831
rosa_laevigata	RLG00000027139 RLG00000032880
rosa_multiflora	Rmu_sc0000968.1_g000014 Rmu_sc0001482.1_g000011
rosa_roxburghii	Rroxscaffold_1G00053370 Rroxscaffold_1G00054370 Rroxscaffold_4G00287750
rosa_rugosa	Rorug01G0349400 Rorug05G0088800 Rorug05G0088900
rosa_samantha	Rh1AG356600 Rh1BG320600 Rh1CG334600 Rh1DG351300 Rh5AG180900 Rh5BG179500 Rh5CG197300 Rh5DG179200
rosa_wichuraiana	Rw1G031480 Rw5G016410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	566
AccB7I	CCANNNNNTGG	1 cut(s)	481
AccBSI	CCGCTC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	546
AccIII	TCCGGA	1 cut(s)	466
AciI	CCGC	2 cut(s)	30, 524
AclWI	GGATC	2 cut(s)	265, 515
AcoI	YGGCCR	1 cut(s)	584
AcsI	RAATTY	3 cut(s)	642, 701, 754
AcuI	CTGAAG	1 cut(s)	477
AfiI	CCNNNNNNNGG	6 cut(s)	53, 262, 263, 481, 497, 530
AflII	CTTAAG	1 cut(s)	421
AgsI	TTSAA	2 cut(s)	319, 497
AjnI	CCWGG	4 cut(s)	32, 228, 586, 688
AluBI	AGCT	5 cut(s)	105, 126, 332, 379, 406
AluI	AGCT	5 cut(s)	105, 126, 332, 379, 406
Alw26I	GTCTC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	265, 515
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	5 cut(s)	6, 348, 417, 487, 584
ApeKI	GCWGC	6 cut(s)	21, 50, 332, 376, 629, 632
ApoI	RAATTY	3 cut(s)	642, 701, 754
AseI	ATTAAT	1 cut(s)	357
Asp700I	GAANNNNTTC	2 cut(s)	462, 705
AspS9I	GGNCC	2 cut(s)	488, 650
AsuC2I	CCSGG	1 cut(s)	257
AsuHPI	GGTGA	2 cut(s)	59, 233
AvaII	GGWCC	1 cut(s)	650
BalI	TGGCCA	1 cut(s)	586
BanI	GGYRCC	1 cut(s)	566
BbvI	GCAGC	6 cut(s)	8, 37, 319, 388, 616, 644
BccI	CCATC	3 cut(s)	103, 524, 578
BceAI	ACGGC	2 cut(s)	363, 368
BciT130I	CCWGG	4 cut(s)	34, 230, 588, 690
BcnI	CCSGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	612
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	561, 630
BfrI	CTTAAG	1 cut(s)	421
BglI	GCCNNNNNGGC	1 cut(s)	14
BisI	GCNGC	6 cut(s)	22, 51, 333, 377, 630, 633
BlsI	GCNGC	6 cut(s)	23, 52, 334, 378, 631, 634
Bme1390I	CCNGG	5 cut(s)	34, 230, 257, 588, 690
Bme18I	GGWCC	1 cut(s)	650
BmgT120I	GGNCC	2 cut(s)	488, 650
BmiI	GGNNCC	5 cut(s)	93, 465, 535, 568, 694
BmrFI	CCNGG	5 cut(s)	34, 230, 257, 588, 690
BmrI	ACTGGG	1 cut(s)	612
BmuI	ACTGGG	1 cut(s)	612
BpmI	CTGGAG	2 cut(s)	251, 520
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	6 cut(s)	12, 33, 255, 384, 636, 688
BsaWI	WCCGGW	2 cut(s)	273, 466
Bsc4I	CCNNNNNNNGG	6 cut(s)	53, 262, 263, 481, 497, 530
Bse118I	RCCGGY	2 cut(s)	46, 53
Bse1I	ACTGG	1 cut(s)	607
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	4 cut(s)	34, 230, 588, 690
BseDI	CCNNGG	6 cut(s)	12, 33, 255, 384, 636, 688
BseGI	GGATG	2 cut(s)	26, 376
BseLI	CCNNNNNNNGG	6 cut(s)	53, 262, 263, 481, 497, 530
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	6 cut(s)	8, 37, 319, 388, 616, 644
BshFI	GGCC	5 cut(s)	8, 350, 419, 489, 586
BshNI	GGYRCC	1 cut(s)	566
BsiSI	CCGG	5 cut(s)	47, 54, 257, 274, 467
BslI	CCNNNNNNNGG	6 cut(s)	53, 262, 263, 481, 497, 530
BsmAI	GTCTC	1 cut(s)	612
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	5 cut(s)	8, 350, 419, 489, 586
Bso31I	GGTCTC	1 cut(s)	612
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	4 cut(s)	161, 270, 520, 726
Bsp19I	CCATGG	2 cut(s)	12, 636
BspACI	CCGC	2 cut(s)	30, 524
BspANI	GGCC	5 cut(s)	8, 350, 419, 489, 586
BspCNI	CTCAG	1 cut(s)	294
BspEI	TCCGGA	1 cut(s)	466
BspLI	GGNNCC	5 cut(s)	93, 465, 535, 568, 694
BspMAI	CTGCAG	1 cut(s)	634
BspPI	GGATC	2 cut(s)	265, 515
BspT107I	GGYRCC	1 cut(s)	566
BspTI	CTTAAG	1 cut(s)	421
BspTNI	GGTCTC	1 cut(s)	612
BsrBI	CCGCTC	1 cut(s)	526
BsrFI	RCCGGY	2 cut(s)	46, 53
BsrI	ACTGG	1 cut(s)	607
BssAI	RCCGGY	2 cut(s)	46, 53
BssECI	CCNNGG	6 cut(s)	12, 33, 255, 384, 636, 688
BssMI	GATC	4 cut(s)	161, 270, 520, 726
BssT1I	CCWWGG	2 cut(s)	12, 636
Bst2UI	CCWGG	4 cut(s)	34, 230, 588, 690
Bst4CI	ACNGT	2 cut(s)	562, 650
Bst6I	CTCTTC	3 cut(s)	137, 453, 610
BstAFI	CTTAAG	1 cut(s)	421
BstC8I	GCNNGC	7 cut(s)	19, 48, 55, 352, 381, 396, 451
BstDEI	CTNAG	1 cut(s)	302
BstDSI	CCRYGG	3 cut(s)	12, 384, 636
BstF5I	GGATG	2 cut(s)	26, 376
BstKTI	GATC	4 cut(s)	164, 273, 523, 729
BstMAI	GTCTC	1 cut(s)	612
BstMBI	GATC	4 cut(s)	161, 270, 520, 726
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	4 cut(s)	34, 230, 588, 690
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	5 cut(s)	32, 228, 255, 586, 688
BstSFI	CTRYAG	2 cut(s)	561, 630
BstV1I	GCAGC	6 cut(s)	8, 37, 319, 388, 616, 644
BsuRI	GGCC	5 cut(s)	8, 350, 419, 489, 586
BtgI	CCRYGG	3 cut(s)	12, 384, 636
BtgZI	GCGATG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	26, 376
BtsIMutI	CAGTG	2 cut(s)	299, 558
Cac8I	GCNNGC	7 cut(s)	19, 48, 55, 352, 381, 396, 451
Cfr10I	RCCGGY	2 cut(s)	46, 53
Cfr13I	GGNCC	2 cut(s)	488, 650
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	6 cut(s)	13, 200, 289, 434, 481, 637
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	4 cut(s)	163, 272, 522, 728
DpnII	GATC	4 cut(s)	161, 270, 520, 726
EaeI	YGGCCR	1 cut(s)	584
Eam1104I	CTCTTC	3 cut(s)	137, 453, 610
EarI	CTCTTC	3 cut(s)	137, 453, 610
EciI	GGCGGA	1 cut(s)	19
Eco130I	CCWWGG	2 cut(s)	12, 636
Eco147I	AGGCCT	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	477
EcoRII	CCWGG	4 cut(s)	32, 228, 586, 688
EcoT14I	CCWWGG	2 cut(s)	12, 636
ErhI	CCWWGG	2 cut(s)	12, 636
FaeI	CATG	6 cut(s)	16, 203, 292, 437, 484, 640
FatI	CATG	6 cut(s)	12, 199, 288, 433, 480, 636
FauNDI	CATATG	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	6 cut(s)	22, 51, 333, 377, 630, 633
FokI	GGATG	2 cut(s)	13, 383
Fsp4HI	GCNGC	6 cut(s)	22, 51, 333, 377, 630, 633
FspBI	CTAG	1 cut(s)	654
GluI	GCNGC	6 cut(s)	22, 51, 333, 377, 630, 633
GsuI	CTGGAG	2 cut(s)	251, 520
HaeIII	GGCC	5 cut(s)	8, 350, 419, 489, 586
HapII	CCGG	5 cut(s)	47, 54, 257, 274, 467
Hin1II	CATG	6 cut(s)	16, 203, 292, 437, 484, 640
HincII	GTYRAC	2 cut(s)	547, 600
HindII	GTYRAC	2 cut(s)	547, 600
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	2 cut(s)	64, 140
HpaI	GTTAAC	1 cut(s)	600
HpaII	CCGG	5 cut(s)	47, 54, 257, 274, 467
HphI	GGTGA	2 cut(s)	59, 233
Hpy166II	GTNNAC	2 cut(s)	547, 600
Hpy188I	TCNGA	4 cut(s)	137, 270, 326, 457
Hpy188III	TCNNGA	2 cut(s)	467, 713
Hpy8I	GTNNAC	2 cut(s)	547, 600
HpyAV	CCTTC	3 cut(s)	325, 491, 713
HpyCH4III	ACNGT	2 cut(s)	562, 650
HpyCH4V	TGCA	5 cut(s)	215, 245, 354, 441, 632
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	302
Hsp92II	CATG	6 cut(s)	16, 203, 292, 437, 484, 640
Kpn2I	TCCGGA	1 cut(s)	466
KroI	GCCGGC	2 cut(s)	46, 53
KroNI	GCCGGC	2 cut(s)	48, 55
KspAI	GTTAAC	1 cut(s)	600
Kzo9I	GATC	4 cut(s)	161, 270, 520, 726
LmnI	GCTCC	4 cut(s)	97, 110, 131, 539
Lsp1109I	GCAGC	6 cut(s)	8, 37, 319, 388, 616, 644
MaeI	CTAG	1 cut(s)	654
MaeIII	GTNAC	6 cut(s)	65, 202, 425, 607, 730, 768
MalI	GATC	4 cut(s)	163, 272, 522, 728
MbiI	CCGCTC	1 cut(s)	526
MboI	GATC	4 cut(s)	161, 270, 520, 726
MboII	GAAGA	6 cut(s)	124, 470, 627, 698, 701, 754
MfeI	CAATTG	1 cut(s)	492
MlsI	TGGCCA	1 cut(s)	586
MluCI	AATT	5 cut(s)	358, 492, 642, 701, 754
MluNI	TGGCCA	1 cut(s)	586
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	7 cut(s)	140, 226, 297, 335, 409, 454, 479
Mox20I	TGGCCA	1 cut(s)	586
MroI	TCCGGA	1 cut(s)	466
MroNI	GCCGGC	2 cut(s)	46, 53
MroXI	GAANNNNTTC	2 cut(s)	462, 705
MscI	TGGCCA	1 cut(s)	586
MseI	TTAA	3 cut(s)	357, 422, 599
Msp20I	TGGCCA	1 cut(s)	586
MspA1I	CMGCKG	1 cut(s)	332
MspCI	CTTAAG	1 cut(s)	421
MspI	CCGG	5 cut(s)	47, 54, 257, 274, 467
MspR9I	CCNGG	5 cut(s)	34, 230, 257, 588, 690
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	4 cut(s)	34, 230, 588, 690
MwoI	GCNNNNNNNGC	1 cut(s)	14
NaeI	GCCGGC	2 cut(s)	48, 55
NciI	CCSGG	1 cut(s)	257
NcoI	CCATGG	2 cut(s)	12, 636
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	4 cut(s)	161, 270, 520, 726
NgoMIV	GCCGGC	2 cut(s)	46, 53
NlaIII	CATG	6 cut(s)	16, 203, 292, 437, 484, 640
NlaIV	GGNNCC	5 cut(s)	93, 465, 535, 568, 694
NmuCI	GTSAC	2 cut(s)	65, 202
NspI	RCATGY	1 cut(s)	437
PceI	AGGCCT	1 cut(s)	419
PctI	GAATGC	1 cut(s)	73
PdiI	GCCGGC	2 cut(s)	48, 55
PdmI	GAANNNNTTC	2 cut(s)	462, 705
PfeI	GAWTC	1 cut(s)	140
PflMI	CCANNNNNTGG	1 cut(s)	481
PkrI	GCNGC	6 cut(s)	23, 52, 334, 378, 631, 634
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	357
Psp6I	CCWGG	4 cut(s)	32, 228, 586, 688
PspGI	CCWGG	4 cut(s)	32, 228, 586, 688
PspN4I	GGNNCC	5 cut(s)	93, 465, 535, 568, 694
PspPI	GGNCC	2 cut(s)	488, 650
PstI	CTGCAG	1 cut(s)	634
PvuII	CAGCTG	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	545
SaqAI	TTAA	3 cut(s)	357, 422, 599
SatI	GCNGC	6 cut(s)	22, 51, 333, 377, 630, 633
Sau3AI	GATC	4 cut(s)	161, 270, 520, 726
Sau96I	GGNCC	2 cut(s)	488, 650
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	5 cut(s)	34, 230, 257, 588, 690
SfcI	CTRYAG	2 cut(s)	561, 630
SinI	GGWCC	1 cut(s)	650
SmlI	CTYRAG	2 cut(s)	170, 421
SmoI	CTYRAG	2 cut(s)	170, 421
Sse9I	AATT	5 cut(s)	358, 492, 642, 701, 754
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	2 cut(s)	30, 524
SspMI	CTAG	1 cut(s)	654
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	5 cut(s)	32, 228, 255, 586, 688
StyI	CCWWGG	2 cut(s)	12, 636
TaaI	ACNGT	2 cut(s)	562, 650
TaqI	TCGA	3 cut(s)	528, 546, 714
TasI	AATT	5 cut(s)	358, 492, 642, 701, 754
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	3 cut(s)	357, 422, 599
Tru9I	TTAA	3 cut(s)	357, 422, 599
TscAI	CASTG	2 cut(s)	306, 565
TseFI	GTSAC	2 cut(s)	65, 202
TseI	GCWGC	6 cut(s)	21, 50, 332, 376, 629, 632
Tsp45I	GTSAC	2 cut(s)	65, 202
TspDTI	ATGAA	1 cut(s)	732
TspRI	CASTG	2 cut(s)	306, 565
Van91I	CCANNNNNTGG	1 cut(s)	481
Vha464I	CTTAAG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	650
VspI	ATTAAT	1 cut(s)	357
XapI	RAATTY	3 cut(s)	642, 701, 754
XceI	RCATGY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	85
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	2 cut(s)	462, 705
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.