Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003169

Physical Location & Seq

Genomic Coordinates Forward (+)

19841933 .. 19845097

Gene Structure 3165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG179200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGACCAGCGTTGCATGCTATGCCAGAGGAGCTTTCCCGCGTAATGTTTCATCATCTCAGCATTCGACCTCGTTAATGTCTCCTGCTTCTATCTCTTCATCTTTCAATGCTAAGGTTTTGAGAACAAGCTCCCTATTTGGGGAATCATTACGTCTGGTGCCGAAGTCATCCCTAAGAGCTTTAAAGACAAAGAACAGTTCCATTACACCAAAATGCGCAATCGGGGATAGCTTGGAAGAGTTTCTAACAAAGGCCACCCCGGATAAGTCACTGATTTCATTGTTGTTGGCAATGGGAGAAGCAATAAGGACGATTGGATTCAAAGTGAGGACAGCTTCTTGTGGTGGAACTGCATGTGTCAATACCTTTGGAGATGAGCAGCTTGCTGTTGATATGCTTGCTGATAAGCTTCTATTTGAGGCCTTAACTTACTCACACGTCTGCAAATATGCTTGTTCCGAAGAAGTTCCTGAGCTCCAGGACATGGGAGGCCCAGTTGAAGGTGGATTCAGTGTTGCTTTTGATCCGCTTGATGGGTCAAGTATTGTGGACACAAACTTCACAGTGGGGACTATCTTTGGGGTGTGGCCGGGAGATAAGTTAACTGGGGTTACCGGAGCTGACCAAGTTGCTGCAGCCATGGGGATTTACGGGCCTCGAACAACTTATGTTCTTGCTATTAAAGGCTTCCCTGGCACACATGAGTTCCTTCTTCTTGATGAAGGAAAGTGGCAACATGTCAAGGAGACAACAGAAATTGGTGAAGGAAAGATGTTCTCTCCCGGAAATTTGAGAGCCACATTTGACAACCCCGACTACAGCAAGGTCATTTTTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009311 GO:0009312 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015977 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019252 GO:0019253 GO:0019318 GO:0019319 GO:0019637 GO:0019685 GO:0030388 GO:0031967 GO:0031975 GO:0033692 GO:0034637 GO:0034645 GO:0042132 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050278 GO:0050308 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

FBPase

Protein Analysis

280

Amino Acids

29.93

Weight (kDa)

5.59

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	72 - 250	7.5e-56	Fructose-1-6-bisphosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55800
fragaria_vesca	FvH4_3g15380 FvH4_7g23960
malus_domestica	MD01G1146300.v1.1 MD05G1223500.v1.1 MD07G1213200.v1.1 MD10G1204900.v1.1 MD10G1205000.v1.1
prunus_persica	Prupe.2G245700_v2.0.a1 Prupe.2G245700_v2.0.a1 Prupe.4G136700_v2.0.a1
pyrus_communis	pycom01g16550 pycom05g20640 pycom07g19600 pycom10g17540
rosa_chinensis	RchiOBHm_Chr1g0369301 RchiOBHm_Chr5g0025831
rosa_laevigata	RLG00000027139 RLG00000032880
rosa_multiflora	Rmu_sc0000968.1_g000014 Rmu_sc0001482.1_g000011
rosa_roxburghii	Rroxscaffold_1G00053370 Rroxscaffold_1G00054370 Rroxscaffold_4G00287750
rosa_rugosa	Rorug01G0349400 Rorug05G0088800 Rorug05G0088900
rosa_samantha	Rh1AG356600 Rh1BG320600 Rh1CG334600 Rh1DG351300 Rh5AG180900 Rh5BG179500 Rh5CG197300 Rh5DG179200
rosa_wichuraiana	Rw1G031480 Rw5G016410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	160
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccII	CGCG	1 cut(s)	43
AciI	CCGC	2 cut(s)	41, 530
AclWI	GGATC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	590
AcsI	RAATTY	1 cut(s)	790
AfiI	CCNNNNNNNGG	5 cut(s)	141, 142, 487, 503, 536
AflIII	ACRYGT	2 cut(s)	439, 739
AgsI	TTSAA	3 cut(s)	109, 325, 503
AjiI	CACGTC	1 cut(s)	442
AjnI	CCWGG	2 cut(s)	480, 694
AluBI	AGCT	9 cut(s)	35, 132, 182, 234, 338, 385, 412, 478, 623
AluI	AGCT	9 cut(s)	35, 132, 182, 234, 338, 385, 412, 478, 623
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	2 cut(s)	87, 743
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	5 cut(s)	255, 423, 493, 590, 656
ApeKI	GCWGC	3 cut(s)	382, 635, 638
ApoI	RAATTY	1 cut(s)	790
Asp700I	GAANNNNTTC	2 cut(s)	243, 468
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	494, 656
AsuC2I	CCSGG	3 cut(s)	263, 594, 786
AsuHPI	GGTGA	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	3 cut(s)	394, 622, 650
BccI	CCATC	1 cut(s)	530
BciT130I	CCWGG	2 cut(s)	482, 696
BcnI	CCSGG	3 cut(s)	263, 594, 786
BcoDI	GTCTC	2 cut(s)	87, 743
BfmI	CTRYAG	2 cut(s)	636, 820
BisI	GCNGC	3 cut(s)	383, 636, 639
BlsI	GCNGC	3 cut(s)	384, 637, 640
Bme1390I	CCNGG	5 cut(s)	263, 482, 594, 696, 786
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	494, 656
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	5 cut(s)	263, 482, 594, 696, 786
BmrI	ACTGGG	2 cut(s)	491, 618
BmuI	ACTGGG	2 cut(s)	491, 618
BpmI	CTGGAG	1 cut(s)	464
Bpu10I	CCTNAGC	2 cut(s)	114, 474
BpuMI	CCSGG	3 cut(s)	263, 594, 786
BsaJI	CCNNGG	3 cut(s)	261, 642, 694
BsaWI	WCCGGW	1 cut(s)	617
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	5 cut(s)	141, 142, 487, 503, 536
Bse1I	ACTGG	2 cut(s)	497, 613
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	482, 696
BseDI	CCNNGG	3 cut(s)	261, 642, 694
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	5 cut(s)	141, 142, 487, 503, 536
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	74, 465
BseNI	ACTGG	2 cut(s)	497, 613
BseRI	GAGGAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	394, 622, 650
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	5 cut(s)	257, 425, 495, 592, 658
BshNI	GGYRCC	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	4 cut(s)	263, 593, 618, 786
BslFI	GGGAC	1 cut(s)	586
BslI	CCNNNNNNNGG	5 cut(s)	141, 142, 487, 503, 536
BsmAI	GTCTC	2 cut(s)	87, 743
BsmFI	GGGAC	1 cut(s)	586
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	5 cut(s)	257, 425, 495, 592, 658
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	1 cut(s)	526
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	2 cut(s)	41, 530
BspANI	GGCC	5 cut(s)	257, 425, 495, 592, 658
BspCNI	CTCAG	2 cut(s)	73, 466
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	521
BspT107I	GGYRCC	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	497, 613
BssECI	CCNNGG	3 cut(s)	261, 642, 694
BssMI	GATC	1 cut(s)	526
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	2 cut(s)	482, 696
Bst4CI	ACNGT	2 cut(s)	200, 568
Bst6I	CTCTTC	2 cut(s)	103, 234
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	3 cut(s)	19, 387, 402
BstDEI	CTNAG	4 cut(s)	60, 114, 176, 474
BstDSI	CCRYGG	1 cut(s)	642
BstEII	GGTNACC	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	1 cut(s)	529
BstMAI	GTCTC	2 cut(s)	87, 743
BstMBI	GATC	1 cut(s)	526
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 23, 32, 696
BstNI	CCWGG	2 cut(s)	482, 696
BstNSI	RCATGY	3 cut(s)	21, 360, 743
BstPI	GGTNACC	1 cut(s)	613
BstSCI	CCNGG	5 cut(s)	261, 480, 592, 694, 784
BstSFI	CTRYAG	2 cut(s)	636, 820
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	394, 622, 650
BsuRI	GGCC	5 cut(s)	257, 425, 495, 592, 658
BtgI	CCRYGG	1 cut(s)	642
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	3 cut(s)	272, 520, 573
Cac8I	GCNNGC	3 cut(s)	19, 387, 402
CfoI	GCGC	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	494, 656
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	6 cut(s)	18, 357, 487, 643, 704, 740
DdeI	CTNAG	4 cut(s)	60, 114, 176, 474
DpnI	GATC	1 cut(s)	528
DpnII	GATC	1 cut(s)	526
DraI	TTTAAA	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	590
Eam1104I	CTCTTC	2 cut(s)	103, 234
EarI	CTCTTC	2 cut(s)	103, 234
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	425
Eco24I	GRGCYC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	478
Eco91I	GGTNACC	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	478
EcoO65I	GGTNACC	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	480, 694
EcoT14I	CCWWGG	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	6 cut(s)	21, 360, 490, 646, 707, 743
FaqI	GGGAC	1 cut(s)	586
FatI	CATG	6 cut(s)	17, 356, 486, 642, 703, 739
FauI	CCCGC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	383, 636, 639
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	3 cut(s)	383, 636, 639
FspI	TGCGCA	1 cut(s)	220
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	3 cut(s)	383, 636, 639
GsuI	CTGGAG	1 cut(s)	464
HaeIII	GGCC	5 cut(s)	257, 425, 495, 592, 658
HapII	CCGG	4 cut(s)	263, 593, 618, 786
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	6 cut(s)	21, 360, 490, 646, 707, 743
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	146, 321, 510
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	4 cut(s)	263, 593, 618, 786
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	2 cut(s)	553, 606
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	2 cut(s)	473, 719
Hpy8I	GTNNAC	2 cut(s)	553, 606
HpyAV	CCTTC	4 cut(s)	497, 719, 722, 761
HpyCH4III	ACNGT	2 cut(s)	200, 568
HpyCH4IV	ACGT	2 cut(s)	154, 441
HpyCH4V	TGCA	4 cut(s)	17, 356, 447, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 23, 32, 696
HpyF3I	CTNAG	4 cut(s)	60, 114, 176, 474
HpySE526I	ACGT	2 cut(s)	154, 441
Hsp92II	CATG	6 cut(s)	21, 360, 490, 646, 707, 743
HspAI	GCGC	1 cut(s)	219
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	1 cut(s)	526
LmnI	GCTCC	4 cut(s)	32, 137, 483, 620
Lsp1109I	GCAGC	3 cut(s)	394, 622, 650
MaeII	ACGT	2 cut(s)	154, 441
MaeIII	GTNAC	2 cut(s)	270, 613
MalI	GATC	1 cut(s)	528
MboI	GATC	1 cut(s)	526
MboII	GAAGA	4 cut(s)	90, 251, 476, 707
MhlI	GDGCHC	1 cut(s)	480
MluCI	AATT	2 cut(s)	759, 790
MnlI	CCTC	6 cut(s)	23, 82, 324, 415, 485, 669
MroXI	GAANNNNTTC	2 cut(s)	243, 468
MseI	TTAA	6 cut(s)	77, 185, 428, 605, 684, 841
MslI	CAYNNNNRTG	1 cut(s)	214
MspI	CCGG	4 cut(s)	263, 593, 618, 786
MspR9I	CCNGG	5 cut(s)	263, 482, 594, 696, 786
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	2 cut(s)	482, 696
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	4 cut(s)	18, 23, 32, 696
NciI	CCSGG	3 cut(s)	263, 594, 786
NcoI	CCATGG	1 cut(s)	642
NdeII	GATC	1 cut(s)	526
NlaIII	CATG	6 cut(s)	21, 360, 490, 646, 707, 743
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	270
NsbI	TGCGCA	1 cut(s)	220
NspI	RCATGY	3 cut(s)	21, 360, 743
PaeI	GCATGC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	425
PciI	ACATGT	1 cut(s)	739
PctI	GAATGC	1 cut(s)	64
PdmI	GAANNNNTTC	2 cut(s)	243, 468
PfeI	GAWTC	3 cut(s)	146, 321, 510
PflMI	CCANNNNNTGG	1 cut(s)	487
PfoI	TCCNGGA	2 cut(s)	480, 784
PkrI	GCNGC	3 cut(s)	384, 637, 640
PscI	ACATGT	1 cut(s)	739
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	480, 694
PspEI	GGTNACC	1 cut(s)	613
PspGI	CCWGG	2 cut(s)	480, 694
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	2 cut(s)	494, 656
PstI	CTGCAG	1 cut(s)	640
RseI	CAYNNNNRTG	1 cut(s)	214
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	6 cut(s)	77, 185, 428, 605, 684, 841
SatI	GCNGC	3 cut(s)	383, 636, 639
Sau3AI	GATC	1 cut(s)	526
Sau96I	GGNCC	2 cut(s)	494, 656
ScrFI	CCNGG	5 cut(s)	263, 482, 594, 696, 786
SduI	GDGCHC	1 cut(s)	480
SfcI	CTRYAG	2 cut(s)	636, 820
SmiMI	CAYNNNNRTG	1 cut(s)	214
SphI	GCATGC	1 cut(s)	21
Sse9I	AATT	2 cut(s)	759, 790
SseBI	AGGCCT	1 cut(s)	425
SsiI	CCGC	2 cut(s)	41, 530
SstI	GAGCTC	1 cut(s)	480
StuI	AGGCCT	1 cut(s)	425
StyD4I	CCNGG	5 cut(s)	261, 480, 592, 694, 784
StyI	CCWWGG	1 cut(s)	642
TaaI	ACNGT	2 cut(s)	200, 568
TaiI	ACGT	2 cut(s)	157, 444
TaqI	TCGA	2 cut(s)	68, 661
TasI	AATT	2 cut(s)	759, 790
TfiI	GAWTC	3 cut(s)	146, 321, 510
Tru1I	TTAA	6 cut(s)	77, 185, 428, 605, 684, 841
Tru9I	TTAA	6 cut(s)	77, 185, 428, 605, 684, 841
TscAI	CASTG	3 cut(s)	279, 520, 573
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	3 cut(s)	382, 635, 638
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	5 cut(s)	42, 90, 270, 738, 827
TspRI	CASTG	3 cut(s)	279, 520, 573
Van91I	CCANNNNNTGG	1 cut(s)	487
XapI	RAATTY	1 cut(s)	790
XceI	RCATGY	3 cut(s)	21, 360, 743
XmnI	GAANNNNTTC	2 cut(s)	243, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.