Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003169

Physical Location & Seq

Genomic Coordinates Forward (+)

57582373 .. 57584933

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG351300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATGTGTATGGGAGAAGCACTGAGGACTATTTCCTTCAAGGTGAGAACAGCTTCATGTGGAGGAACAGCCTGTGTTAACTCTTTCGGGGATGAGCAGCTTGCGGTGGATATGCTCGCCGACAAGCTTTTGTTTGAGGCCTTAACTTACTCACATGTCTGCAAATACGCATGCTCTGAAGAGGTTCCAGAACTCCAAGACATGGGAGGCCCAGTTGAAGGTGGATTCAGTGTTGCTTTTGATCCACTGGACGGCTCCAGCATCGTTGACACCAACTTCACTGTGGGCACCATATTTGGGGTGTGGCCAGGAGATAAGTTAACTGGCGTAACAGGGGCGGACCAAGTTGCTGCAGCCATGGGTATTTATGGTCCTAGAACTACTTATGTCCTTGCCATTAAAGGCTTCCCCGGAACACATGAATTCCTTCTTCTCGATGAAGGAAAGTGGCAACATGTCAAAGAGACAACAGAGATATCTGAAGGGAAAATGTTCTCTCCTGGAAATTTGAGAGCCACATTTGACAATCCAGACTATGACAAGTTGATCAACTACTATGTCAAAGAGAAATACACATTGAGATACACTGGAGGAATGGTGCCAGATGTCAACCAGATAATTGTAAAGGAGAAAGGGGTTTTCACCAATGTGACATCTCCAAGTACCAAAGCCAAGCTCAGGCTGTTGTTTGAGGTAGCTCCATTGGGGTTATTGGTTGAGAATGCTGGAGGTTTTAGTAGTGATGGTCATCAGTCTGTGCTAGACAAGGTCATCGTTAATCTAGACGACAGAACTCAAGTTGCTTATGGATCCAAGAATGAGATTATCCGGTTTGAAGAAACTCTATATGGATCATCAAGGCTCAAGGGAGGAGTACCTGTTGGAGCTGCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009311 GO:0009312 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015977 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019252 GO:0019253 GO:0019318 GO:0019319 GO:0019637 GO:0019685 GO:0030388 GO:0031967 GO:0031975 GO:0033692 GO:0034637 GO:0034645 GO:0042132 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050278 GO:0050308 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

FBPase

Protein Analysis

298

Amino Acids

32.19

Weight (kDa)

4.97

Isoelectric Point (pI)

26.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	1 - 155	7.7e-55	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	161 - 281	1.6e-37	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55800
fragaria_vesca	FvH4_3g15380 FvH4_7g23960
malus_domestica	MD01G1146300.v1.1 MD05G1223500.v1.1 MD07G1213200.v1.1 MD10G1204900.v1.1 MD10G1205000.v1.1
prunus_persica	Prupe.2G245700_v2.0.a1 Prupe.2G245700_v2.0.a1 Prupe.4G136700_v2.0.a1
pyrus_communis	pycom01g16550 pycom05g20640 pycom07g19600 pycom10g17540
rosa_chinensis	RchiOBHm_Chr1g0369301 RchiOBHm_Chr5g0025831
rosa_laevigata	RLG00000027139 RLG00000032880
rosa_multiflora	Rmu_sc0000968.1_g000014 Rmu_sc0001482.1_g000011
rosa_roxburghii	Rroxscaffold_1G00053370 Rroxscaffold_1G00054370 Rroxscaffold_4G00287750
rosa_rugosa	Rorug01G0349400 Rorug05G0088800 Rorug05G0088900
rosa_samantha	Rh1AG356600 Rh1BG320600 Rh1CG334600 Rh1DG351300 Rh5AG180900 Rh5BG179500 Rh5CG197300 Rh5DG179200
rosa_wichuraiana	Rw1G031480 Rw5G016410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	287, 598
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	2 cut(s)	104, 338
AclWI	GGATC	4 cut(s)	236, 804, 817, 859
AcoI	YGGCCR	1 cut(s)	305
AcsI	RAATTY	2 cut(s)	422, 505
AcuI	CTGAAG	2 cut(s)	198, 501
AfaI	GTAC	2 cut(s)	664, 876
AfiI	CCNNNNNNNGG	5 cut(s)	202, 218, 251, 297, 678
AflIII	ACRYGT	2 cut(s)	154, 454
AgsI	TTSAA	3 cut(s)	40, 218, 836
AjnI	CCWGG	2 cut(s)	307, 499
AleI	CACNNNNGTG	1 cut(s)	647
AluBI	AGCT	6 cut(s)	53, 100, 127, 676, 698, 887
AluI	AGCT	6 cut(s)	53, 100, 127, 676, 698, 887
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	4 cut(s)	236, 804, 817, 859
AoxI	GGCC	3 cut(s)	138, 208, 305
ApeKI	GCWGC	5 cut(s)	97, 350, 353, 887, 890
ApoI	RAATTY	2 cut(s)	422, 505
Asp700I	GAANNNNTTC	4 cut(s)	52, 183, 426, 491
AspS9I	GGNCC	3 cut(s)	209, 340, 371
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	55, 634
AvaII	GGWCC	2 cut(s)	340, 371
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	809
BanI	GGYRCC	2 cut(s)	287, 598
BbvI	GCAGC	5 cut(s)	109, 337, 365, 874, 877
BccI	CCATC	1 cut(s)	737
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	2 cut(s)	309, 501
BclI	TGATCA	1 cut(s)	546
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	1 cut(s)	458
BfaI	CTAG	3 cut(s)	375, 761, 782
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	5 cut(s)	98, 351, 354, 888, 891
BlsI	GCNGC	5 cut(s)	99, 352, 355, 889, 892
Bme1390I	CCNGG	3 cut(s)	309, 411, 501
Bme18I	GGWCC	2 cut(s)	340, 371
BmgT120I	GGNCC	3 cut(s)	209, 340, 371
BmiI	GGNNCC	5 cut(s)	186, 256, 289, 600, 811
BmrFI	CCNGG	3 cut(s)	309, 411, 501
BmrI	ACTGGG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	206
BpmI	CTGGAG	3 cut(s)	241, 609, 747
Bpu10I	CCTNAGC	1 cut(s)	677
BpuEI	CTTGAG	2 cut(s)	780, 848
BpuMI	CCSGG	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	747
BsaJI	CCNNGG	2 cut(s)	357, 409
BsaWI	WCCGGW	1 cut(s)	828
BsaXI	ACNNNNNCTCC	6 cut(s)	198, 228, 582, 612, 864, 894
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 218, 251, 297, 678
Bse1I	ACTGG	4 cut(s)	212, 252, 328, 592
Bse8I	GATNNNNATC	1 cut(s)	747
BseBI	CCWGG	2 cut(s)	309, 501
BseDI	CCNNGG	2 cut(s)	357, 409
BseGI	GGATG	1 cut(s)	97
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	5 cut(s)	202, 218, 251, 297, 678
BseMII	CTCAG	2 cut(s)	14, 691
BseNI	ACTGG	4 cut(s)	212, 252, 328, 592
BseRI	GAGGAG	1 cut(s)	885
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	5 cut(s)	109, 337, 365, 874, 877
BshFI	GGCC	3 cut(s)	140, 210, 307
BshNI	GGYRCC	2 cut(s)	287, 598
BsiSI	CCGG	2 cut(s)	411, 829
BslI	CCNNNNNNNGG	5 cut(s)	202, 218, 251, 297, 678
BsmAI	GTCTC	1 cut(s)	458
BsmI	GAATGC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	140, 210, 307
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	4 cut(s)	241, 546, 809, 851
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	2 cut(s)	104, 338
BspANI	GGCC	3 cut(s)	140, 210, 307
BspCNI	CTCAG	2 cut(s)	15, 690
BspLI	GGNNCC	5 cut(s)	186, 256, 289, 600, 811
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	4 cut(s)	236, 804, 817, 859
BspT107I	GGYRCC	2 cut(s)	287, 598
BsrI	ACTGG	4 cut(s)	212, 252, 328, 592
BssECI	CCNNGG	2 cut(s)	357, 409
BssMI	GATC	4 cut(s)	241, 546, 809, 851
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	309, 501
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	3 cut(s)	102, 117, 172
BstDEI	CTNAG	2 cut(s)	23, 677
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	4 cut(s)	244, 549, 812, 854
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	4 cut(s)	241, 546, 809, 851
BstNI	CCWGG	2 cut(s)	309, 501
BstNSI	RCATGY	3 cut(s)	158, 174, 458
BstSCI	CCNGG	3 cut(s)	307, 409, 499
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	5 cut(s)	109, 337, 365, 874, 877
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BsuRI	GGCC	3 cut(s)	140, 210, 307
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	5 cut(s)	20, 235, 245, 279, 585
Cac8I	GCNNGC	3 cut(s)	102, 117, 172
Cfr13I	GGNCC	3 cut(s)	209, 340, 371
Csp6I	GTAC	2 cut(s)	663, 875
CviAII	CATG	7 cut(s)	57, 155, 171, 202, 358, 419, 455
CviQI	GTAC	2 cut(s)	663, 875
DdeI	CTNAG	2 cut(s)	23, 677
DpnI	GATC	4 cut(s)	243, 548, 811, 853
DpnII	GATC	4 cut(s)	241, 546, 809, 851
EaeI	YGGCCR	1 cut(s)	305
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
EciI	GGCGGA	1 cut(s)	353
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	477
Eco47I	GGWCC	2 cut(s)	340, 371
Eco57I	CTGAAG	2 cut(s)	198, 501
EcoRI	GAATTC	1 cut(s)	422
EcoRII	CCWGG	2 cut(s)	307, 499
EcoRV	GATATC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	7 cut(s)	60, 158, 174, 205, 361, 422, 458
FatI	CATG	7 cut(s)	56, 154, 170, 201, 357, 418, 454
FbaI	TGATCA	1 cut(s)	546
Fnu4HI	GCNGC	5 cut(s)	98, 351, 354, 888, 891
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	98, 351, 354, 888, 891
FspBI	CTAG	3 cut(s)	375, 761, 782
GluI	GCNGC	5 cut(s)	98, 351, 354, 888, 891
GsuI	CTGGAG	3 cut(s)	241, 609, 747
HaeIII	GGCC	3 cut(s)	140, 210, 307
HapII	CCGG	2 cut(s)	411, 829
Hin1II	CATG	7 cut(s)	60, 158, 174, 205, 361, 422, 458
HincII	GTYRAC	4 cut(s)	79, 268, 321, 610
HindII	GTYRAC	4 cut(s)	79, 268, 321, 610
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	225
HpaI	GTTAAC	2 cut(s)	79, 321
HpaII	CCGG	2 cut(s)	411, 829
HphI	GGTGA	2 cut(s)	55, 634
Hpy166II	GTNNAC	4 cut(s)	79, 268, 321, 610
Hpy188I	TCNGA	2 cut(s)	178, 481
Hpy188III	TCNNGA	4 cut(s)	188, 434, 530, 782
Hpy8I	GTNNAC	4 cut(s)	79, 268, 321, 610
HpyAV	CCTTC	5 cut(s)	46, 212, 434, 437, 476
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	162, 353
HpyF3I	CTNAG	2 cut(s)	23, 677
Hsp92II	CATG	7 cut(s)	60, 158, 174, 205, 361, 422, 458
Ksp22I	TGATCA	1 cut(s)	546
KspAI	GTTAAC	2 cut(s)	79, 321
Kzo9I	GATC	4 cut(s)	241, 546, 809, 851
LmnI	GCTCC	3 cut(s)	260, 703, 884
Lsp1109I	GCAGC	5 cut(s)	109, 337, 365, 874, 877
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	3 cut(s)	375, 761, 782
MaeIII	GTNAC	2 cut(s)	328, 649
MalI	GATC	4 cut(s)	243, 548, 811, 853
MboI	GATC	4 cut(s)	241, 546, 809, 851
MboII	GAAGA	3 cut(s)	191, 422, 848
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	307
MluCI	AATT	3 cut(s)	422, 505, 618
MluNI	TGGCCA	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	862
MnlI	CCTC	9 cut(s)	18, 56, 130, 175, 200, 584, 685, 722, 863
Mox20I	TGGCCA	1 cut(s)	307
MroXI	GAANNNNTTC	4 cut(s)	52, 183, 426, 491
MscI	TGGCCA	1 cut(s)	307
MseI	TTAA	6 cut(s)	78, 143, 320, 399, 777, 895
MslI	CAYNNNNRTG	1 cut(s)	647
Msp20I	TGGCCA	1 cut(s)	307
MspI	CCGG	2 cut(s)	411, 829
MspR9I	CCNGG	3 cut(s)	309, 411, 501
Mva1269I	GAATGC	1 cut(s)	727
MvaI	CCWGG	2 cut(s)	309, 501
NciI	CCSGG	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	357
NdeII	GATC	4 cut(s)	241, 546, 809, 851
NlaIII	CATG	7 cut(s)	60, 158, 174, 205, 361, 422, 458
NlaIV	GGNNCC	5 cut(s)	186, 256, 289, 600, 811
NmuCI	GTSAC	1 cut(s)	649
NspI	RCATGY	3 cut(s)	158, 174, 458
OliI	CACNNNNGTG	1 cut(s)	647
PaeI	GCATGC	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	140
PciI	ACATGT	2 cut(s)	154, 454
PctI	GAATGC	1 cut(s)	727
PdmI	GAANNNNTTC	4 cut(s)	52, 183, 426, 491
PfeI	GAWTC	1 cut(s)	225
PflFI	GACNNNGTC	1 cut(s)	767
PflMI	CCANNNNNTGG	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	499
PkrI	GCNGC	5 cut(s)	99, 352, 355, 889, 892
PscI	ACATGT	2 cut(s)	154, 454
Psp6I	CCWGG	2 cut(s)	307, 499
PspGI	CCWGG	2 cut(s)	307, 499
PspN4I	GGNNCC	5 cut(s)	186, 256, 289, 600, 811
PspPI	GGNCC	3 cut(s)	209, 340, 371
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	809
PsyI	GACNNNGTC	1 cut(s)	767
RsaI	GTAC	2 cut(s)	664, 876
RsaNI	GTAC	2 cut(s)	663, 875
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	6 cut(s)	78, 143, 320, 399, 777, 895
SatI	GCNGC	5 cut(s)	98, 351, 354, 888, 891
Sau3AI	GATC	4 cut(s)	241, 546, 809, 851
Sau96I	GGNCC	3 cut(s)	209, 340, 371
ScrFI	CCNGG	3 cut(s)	309, 411, 501
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	270
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	340, 371
SmiMI	CAYNNNNRTG	1 cut(s)	647
SmlI	CTYRAG	2 cut(s)	795, 863
SmoI	CTYRAG	2 cut(s)	795, 863
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	3 cut(s)	422, 505, 618
SseBI	AGGCCT	1 cut(s)	140
SsiI	CCGC	2 cut(s)	104, 338
SspMI	CTAG	3 cut(s)	375, 761, 782
StuI	AGGCCT	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	307, 409, 499
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	435
TasI	AATT	3 cut(s)	422, 505, 618
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	6 cut(s)	78, 143, 320, 399, 777, 895
Tru9I	TTAA	6 cut(s)	78, 143, 320, 399, 777, 895
TscAI	CASTG	5 cut(s)	27, 235, 252, 286, 592
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	5 cut(s)	97, 350, 353, 887, 890
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	3 cut(s)	45, 435, 453
TspRI	CASTG	5 cut(s)	27, 235, 252, 286, 592
Tth111I	GACNNNGTC	1 cut(s)	767
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	2 cut(s)	340, 371
XapI	RAATTY	2 cut(s)	422, 505
XbaI	TCTAGA	1 cut(s)	781
XceI	RCATGY	3 cut(s)	158, 174, 458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmnI	GAANNNNTTC	4 cut(s)	52, 183, 426, 491
XspI	CTAG	3 cut(s)	375, 761, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.