Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003169

Physical Location & Seq

Genomic Coordinates Forward (+)

7633144 .. 7633768

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0088900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGGCAACCACCACCGCCAAGACTTCCACTTCAACTCCCAAACTCAAGAGCTTCGCCCCAGTCCTCCTCCTCCTCGTCTTATCAGCCATCTCCGGCGGATCTGCGAATCGGATCCGGTTGGGTAAGAATCAGATCCCCAGCTGCTGCGACATGTCGTCGGAAGCGCAGTGCTCCCAGAACCCCAAGTGCCGGTGGTGCCGCAGCGAGTCCCTCGACGACTTGTGCTTCCCCAAGTCCGAGGCTCTGCGATTGCCCCCTCAGCTAATTTGTGATGAATGTGCTTCAGTTTGTGCAATTAATTCAACTGGTTTTTACTTTCATGGCGTAAAGATTGTGGCACATTGTGCAAATTTTGTTGCTACAATGTATGTGAGAGTTAATGAATTGTTGTTAAAGAGTGTGATTACTGATCTTGCCTGGCTAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009311 GO:0009312 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015977 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019252 GO:0019253 GO:0019318 GO:0019319 GO:0019637 GO:0019685 GO:0030388 GO:0031967 GO:0031975 GO:0033692 GO:0034637 GO:0034645 GO:0042132 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050278 GO:0050308 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

FBPase

Protein Analysis

143

Amino Acids

15.52

Weight (kDa)

8.56

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55800
fragaria_vesca	FvH4_3g15380 FvH4_7g23960
malus_domestica	MD01G1146300.v1.1 MD05G1223500.v1.1 MD07G1213200.v1.1 MD10G1204900.v1.1 MD10G1205000.v1.1
prunus_persica	Prupe.2G245700_v2.0.a1 Prupe.2G245700_v2.0.a1 Prupe.4G136700_v2.0.a1
pyrus_communis	pycom01g16550 pycom05g20640 pycom07g19600 pycom10g17540
rosa_chinensis	RchiOBHm_Chr1g0369301 RchiOBHm_Chr5g0025831
rosa_laevigata	RLG00000027139 RLG00000032880
rosa_multiflora	Rmu_sc0000968.1_g000014 Rmu_sc0001482.1_g000011
rosa_roxburghii	Rroxscaffold_1G00053370 Rroxscaffold_1G00054370 Rroxscaffold_4G00287750
rosa_rugosa	Rorug01G0349400 Rorug05G0088800 Rorug05G0088900
rosa_samantha	Rh1AG356600 Rh1BG320600 Rh1CG334600 Rh1DG351300 Rh5AG180900 Rh5BG179500 Rh5CG197300 Rh5DG179200
rosa_wichuraiana	Rw1G031480 Rw5G016410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AciI	CCGC	4 cut(s)	5, 18, 99, 202
AclWI	GGATC	4 cut(s)	109, 109, 122, 130
AcsI	RAATTY	1 cut(s)	352
AcuI	CTGAAG	1 cut(s)	270
AdeI	CACNNNGTG	1 cut(s)	347
AfiI	CCNNNNNNNGG	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	36, 306
AhdI	GACNNNNNGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	3 cut(s)	54, 144, 265
AluI	AGCT	3 cut(s)	54, 144, 265
Alw21I	GWGCWC	1 cut(s)	176
AlwI	GGATC	4 cut(s)	109, 109, 122, 130
AlwNI	CAGNNNCTG	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	144, 147, 204
ApoI	RAATTY	1 cut(s)	352
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	169
BamHI	GGATCC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	131, 134, 216
BccI	CCATC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	421
BisI	GCNGC	5 cut(s)	6, 145, 148, 202, 205
BlsI	GCNGC	5 cut(s)	7, 146, 149, 203, 206
Bme1390I	CCNGG	1 cut(s)	421
BmeRI	GACNNNNNGTC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	116, 200
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	117
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	62, 313
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	62, 313
BseRI	GAGGAG	3 cut(s)	59, 62, 65
BseXI	GCAGC	3 cut(s)	131, 134, 216
BseYI	CCCAGC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	96, 118, 193
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	101, 114, 135, 412
BspACI	CCGC	4 cut(s)	5, 18, 99, 202
BspCNI	CTCAG	1 cut(s)	274
BspLI	GGNNCC	2 cut(s)	116, 200
BspPI	GGATC	4 cut(s)	109, 109, 122, 130
BspT107I	GGYRCC	1 cut(s)	198
BsrFI	RCCGGY	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	62, 313
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	101, 114, 135, 412
Bst2UI	CCWGG	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstDEI	CTNAG	1 cut(s)	261
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	4 cut(s)	104, 117, 138, 415
BstMBI	GATC	4 cut(s)	101, 114, 135, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 262, 347
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	419
BstV1I	GCAGC	3 cut(s)	131, 134, 216
BstX2I	RGATCY	3 cut(s)	101, 114, 135
BstYI	RGATCY	3 cut(s)	101, 114, 135
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
CaiI	CAGNNNCTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	169
Cfr10I	RCCGGY	1 cut(s)	192
CviAII	CATG	2 cut(s)	154, 323
CviJI	RGCY	6 cut(s)	54, 89, 144, 245, 265, 424
CviKI_1	RGCY	6 cut(s)	54, 89, 144, 245, 265, 424
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	4 cut(s)	103, 116, 137, 414
DpnII	GATC	4 cut(s)	101, 114, 135, 412
DraIII	CACNNNGTG	1 cut(s)	347
DriI	GACNNNNNGTC	1 cut(s)	157
Eam1105I	GACNNNNNGTC	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	419
FaeI	CATG	2 cut(s)	157, 326
FaiI	YATR	3 cut(s)	155, 324, 372
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	2 cut(s)	153, 322
Fnu4HI	GCNGC	5 cut(s)	6, 145, 148, 202, 205
Fsp4HI	GCNGC	5 cut(s)	6, 145, 148, 202, 205
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	5 cut(s)	6, 145, 148, 202, 205
GsaI	CCCAGC	1 cut(s)	144
HapII	CCGG	3 cut(s)	96, 118, 193
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	157, 326
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	3 cut(s)	109, 130, 209
HpaII	CCGG	3 cut(s)	96, 118, 193
Hpy188I	TCNGA	4 cut(s)	114, 135, 163, 241
Hpy188III	TCNNGA	1 cut(s)	49
Hpy99I	CGWCG	2 cut(s)	163, 221
HpyCH4V	TGCA	2 cut(s)	296, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 262, 347
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	2 cut(s)	157, 326
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	4 cut(s)	101, 114, 135, 412
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	8 cut(s)	75, 109, 131, 154, 191, 206, 294, 406
Lsp1109I	GCAGC	3 cut(s)	131, 134, 216
MalI	GATC	4 cut(s)	103, 116, 137, 414
MboI	GATC	4 cut(s)	101, 114, 135, 412
MflI	RGATCY	3 cut(s)	101, 114, 135
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	6 cut(s)	267, 297, 301, 352, 386, 426
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	7 cut(s)	77, 80, 83, 86, 224, 235, 270
MseI	TTAA	3 cut(s)	300, 381, 395
MspA1I	CMGCKG	1 cut(s)	144
MspI	CCGG	3 cut(s)	96, 118, 193
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	3 cut(s)	198, 262, 347
NdeII	GATC	4 cut(s)	101, 114, 135, 412
NlaIII	CATG	2 cut(s)	157, 326
NlaIV	GGNNCC	2 cut(s)	116, 200
NspI	RCATGY	1 cut(s)	157
PciI	ACATGT	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	109, 130
PkrI	GCNGC	5 cut(s)	7, 146, 149, 203, 206
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PscI	ACATGT	1 cut(s)	153
PshBI	ATTAAT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	116, 200
PstNI	CAGNNNCTG	1 cut(s)	147
PsuI	RGATCY	3 cut(s)	101, 114, 135
PvuII	CAGCTG	1 cut(s)	144
SaqAI	TTAA	3 cut(s)	300, 381, 395
SatI	GCNGC	5 cut(s)	6, 145, 148, 202, 205
Sau3AI	GATC	4 cut(s)	101, 114, 135, 412
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	3 cut(s)	56, 146, 267
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	6 cut(s)	267, 297, 301, 352, 386, 426
SsiI	CCGC	4 cut(s)	5, 18, 99, 202
StyD4I	CCNGG	1 cut(s)	419
TaqI	TCGA	1 cut(s)	216
TasI	AATT	6 cut(s)	267, 297, 301, 352, 386, 426
TauI	GCSGC	2 cut(s)	8, 204
TfiI	GAWTC	2 cut(s)	109, 130
Tru1I	TTAA	3 cut(s)	300, 381, 395
Tru9I	TTAA	3 cut(s)	300, 381, 395
TscAI	CASTG	1 cut(s)	176
TseI	GCWGC	3 cut(s)	144, 147, 204
TspDTI	ATGAA	3 cut(s)	291, 311, 399
TspRI	CASTG	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.