Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003169

Physical Location & Seq

Genomic Coordinates Reverse (-)

20790091 .. 20791291

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGATGGATCCAGCATCGTCGACACGAACTTCACAGTGGGCATAATTTTTGGGGTGTGGCCAGGAGATAAGTTAACTGGGGTAACAGGAAGAGATCAGGTTGCTGCAGCCATGGGAATTTATGGGCCTCGAACGACATATGTTCTTGCTGTTAAAGGCTTCCCCGGCACCCACGAATTCCTTCTTCTTGATGAAGGAAAATGGCAACATGTTAAGGAGACCACAGAAATTGGTGAAGGAAAGCTCTTCTCTCCTGGAAACTTGAGAGCTACCTTTGACAACCCTGACTACAGCAAGTTGATTGACTACTATTTGAAAGAAAAGTACACGTTGAGATACACTGGAGGAATGGTTCCAGATGTTAACCAGATTATTGTAAAGGAGAAGGGTATCTTCACTAATGTGATATCTCCAACTACCAAGGCTAAGCTAAGACTGTTGTTTGAGGTTGCTCCATTAGGGTTGTTGGTTGAGAATGCTGGAGGGTTCAGCAGTGACGGACATCAGTCCGTACTCGATAAAATAGTCGTTAACCTTGACGATCGAACTCAAGTTGCTTATGGATCGAAGAACGAGATTATCCGCTTTGAAGAAACTTTGTATGGATCATCCCGGCTCAAGGGAGTGCCTGTTGGAGCTGCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006073 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009311 GO:0009312 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009941 GO:0009987 GO:0015977 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019252 GO:0019253 GO:0019318 GO:0019319 GO:0019637 GO:0019685 GO:0030388 GO:0031967 GO:0031975 GO:0033692 GO:0034637 GO:0034645 GO:0042132 GO:0042578 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050278 GO:0050308 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0098542 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00710 ko01100 ko01120 ko01200 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

FBPase

Protein Analysis

216

Amino Acids

23.45

Weight (kDa)

5.95

Isoelectric Point (pI)

12.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G55800
fragaria_vesca	FvH4_3g15380 FvH4_7g23960
malus_domestica	MD01G1146300.v1.1 MD05G1223500.v1.1 MD07G1213200.v1.1 MD10G1204900.v1.1 MD10G1205000.v1.1
prunus_persica	Prupe.2G245700_v2.0.a1 Prupe.2G245700_v2.0.a1 Prupe.4G136700_v2.0.a1
pyrus_communis	pycom01g16550 pycom05g20640 pycom07g19600 pycom10g17540
rosa_chinensis	RchiOBHm_Chr1g0369301 RchiOBHm_Chr5g0025831
rosa_laevigata	RLG00000027139 RLG00000032880
rosa_multiflora	Rmu_sc0000968.1_g000014 Rmu_sc0001482.1_g000011
rosa_roxburghii	Rroxscaffold_1G00053370 Rroxscaffold_1G00054370 Rroxscaffold_4G00287750
rosa_rugosa	Rorug01G0349400 Rorug05G0088800 Rorug05G0088900
rosa_samantha	Rh1AG356600 Rh1BG320600 Rh1CG334600 Rh1DG351300 Rh5AG180900 Rh5BG179500 Rh5CG197300 Rh5DG179200
rosa_wichuraiana	Rw1G031480 Rw5G016410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	1 cut(s)	583
AclWI	GGATC	4 cut(s)	3, 16, 571, 613
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	2 cut(s)	117, 176
AfaI	GTAC	2 cut(s)	326, 513
AfiI	CCNNNNNNNGG	1 cut(s)	619
AflIII	ACRYGT	2 cut(s)	208, 327
AgsI	TTSAA	2 cut(s)	316, 590
AjnI	CCWGG	2 cut(s)	61, 253
AleI	CACNNNNGTG	1 cut(s)	401
AloI	GAACNNNNNNTCC	2 cut(s)	336, 368
AluBI	AGCT	4 cut(s)	244, 269, 430, 638
AluI	AGCT	4 cut(s)	244, 269, 430, 638
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	4 cut(s)	3, 16, 571, 613
AoxI	GGCC	2 cut(s)	59, 125
ApeKI	GCWGC	4 cut(s)	104, 107, 638, 641
ApoI	RAATTY	2 cut(s)	117, 176
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	2 cut(s)	165, 613
AsuHPI	GGTGA	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	167
BbvI	GCAGC	4 cut(s)	91, 119, 625, 628
BciT130I	CCWGG	2 cut(s)	63, 255
BcnI	CCSGG	2 cut(s)	165, 613
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	646
BfmI	CTRYAG	2 cut(s)	105, 289
BisI	GCNGC	4 cut(s)	105, 108, 639, 642
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	106, 109, 640, 643
Bme1390I	CCNGG	4 cut(s)	63, 165, 255, 613
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	3 cut(s)	10, 169, 354
BmrFI	CCNGG	4 cut(s)	63, 165, 255, 613
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	24
BmuI	ACTGGG	1 cut(s)	87
BoxI	GACNNNNGTC	1 cut(s)	505
BpmI	CTGGAG	2 cut(s)	363, 501
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	3 cut(s)	283, 534, 602
BpuMI	CCSGG	2 cut(s)	165, 613
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	3 cut(s)	111, 163, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	336, 366, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	619
Bse1I	ACTGG	2 cut(s)	82, 346
BseBI	CCWGG	2 cut(s)	63, 255
BseDI	CCNNGG	3 cut(s)	111, 163, 420
BseGI	GGATG	2 cut(s)	10, 608
BseLI	CCNNNNNNNGG	1 cut(s)	619
BseNI	ACTGG	2 cut(s)	82, 346
BseXI	GCAGC	4 cut(s)	91, 119, 625, 628
Bsh1285I	CGRYCG	1 cut(s)	544
BshFI	GGCC	2 cut(s)	61, 127
BshNI	GGYRCC	1 cut(s)	167
BsiEI	CGRYCG	1 cut(s)	544
BsiSI	CCGG	2 cut(s)	165, 613
BslI	CCNNNNNNNGG	1 cut(s)	619
BsmAI	GTCTC	1 cut(s)	212
BsmI	GAATGC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	61, 127
Bso31I	GGTCTC	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	8, 94, 541, 563, 605
Bsp1720I	GCTNAGC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	1 cut(s)	583
BspANI	GGCC	2 cut(s)	61, 127
BspLI	GGNNCC	3 cut(s)	10, 169, 354
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	4 cut(s)	3, 16, 571, 613
BspQI	GCTCTTC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	82, 346
BssECI	CCNNGG	3 cut(s)	111, 163, 420
BssMI	GATC	5 cut(s)	8, 94, 541, 563, 605
BssT1I	CCWWGG	2 cut(s)	111, 420
Bst2UI	CCWGG	2 cut(s)	63, 255
Bst4CI	ACNGT	2 cut(s)	37, 438
Bst6I	CTCTTC	2 cut(s)	85, 251
BstDEI	CTNAG	2 cut(s)	426, 431
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	10, 608
BstKTI	GATC	5 cut(s)	11, 97, 544, 566, 608
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	5 cut(s)	8, 94, 541, 563, 605
BstMCI	CGRYCG	1 cut(s)	544
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	2 cut(s)	63, 255
BstNSI	RCATGY	1 cut(s)	212
BstPAI	GACNNNNGTC	1 cut(s)	505
BstSCI	CCNGG	4 cut(s)	61, 163, 253, 611
BstSFI	CTRYAG	2 cut(s)	105, 289
BstV1I	GCAGC	4 cut(s)	91, 119, 625, 628
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	61, 127
BtgI	CCRYGG	1 cut(s)	111
BtsCI	GGATG	2 cut(s)	10, 608
BtsI	GCAGTG	1 cut(s)	499
BtsIMutI	CAGTG	3 cut(s)	42, 339, 499
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	325, 512
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	2 cut(s)	112, 209
CviQI	GTAC	2 cut(s)	325, 512
DdeI	CTNAG	2 cut(s)	426, 431
DpnI	GATC	5 cut(s)	10, 96, 543, 565, 607
DpnII	GATC	5 cut(s)	8, 94, 541, 563, 605
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	2 cut(s)	85, 251
EarI	CTCTTC	2 cut(s)	85, 251
Eco130I	CCWWGG	2 cut(s)	111, 420
Eco31I	GGTCTC	1 cut(s)	212
Eco32I	GATATC	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	61, 253
EcoRV	GATATC	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	111, 420
ErhI	CCWWGG	2 cut(s)	111, 420
FaeI	CATG	2 cut(s)	115, 212
FaiI	YATR	8 cut(s)	44, 113, 123, 139, 141, 210, 561, 603
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	2 cut(s)	111, 208
FauNDI	CATATG	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	105, 108, 639, 642
FokI	GGATG	2 cut(s)	17, 595
Fsp4HI	GCNGC	4 cut(s)	105, 108, 639, 642
FspBI	CTAG	1 cut(s)	646
GluI	GCNGC	4 cut(s)	105, 108, 639, 642
GsuI	CTGGAG	2 cut(s)	363, 501
HaeIII	GGCC	2 cut(s)	61, 127
HapII	CCGG	2 cut(s)	165, 613
Hin1II	CATG	2 cut(s)	115, 212
HincII	GTYRAC	4 cut(s)	22, 75, 364, 532
HindII	GTYRAC	4 cut(s)	22, 75, 364, 532
HpaI	GTTAAC	3 cut(s)	75, 364, 532
HpaII	CCGG	2 cut(s)	165, 613
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	5 cut(s)	22, 75, 327, 364, 532
Hpy188III	TCNNGA	2 cut(s)	188, 356
Hpy8I	GTNNAC	5 cut(s)	22, 75, 327, 364, 532
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	4 cut(s)	188, 191, 230, 379
HpyCH4III	ACNGT	2 cut(s)	37, 438
HpyCH4IV	ACGT	1 cut(s)	329
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	2 cut(s)	426, 431
HpySE526I	ACGT	1 cut(s)	329
Hsp92II	CATG	2 cut(s)	115, 212
KspAI	GTTAAC	3 cut(s)	75, 364, 532
Kzo9I	GATC	5 cut(s)	8, 94, 541, 563, 605
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	457, 635
Lsp1109I	GCAGC	4 cut(s)	91, 119, 625, 628
LweI	GCATC	1 cut(s)	24
MaeI	CTAG	1 cut(s)	646
MaeII	ACGT	1 cut(s)	329
MaeIII	GTNAC	2 cut(s)	82, 494
MalI	GATC	5 cut(s)	10, 96, 543, 565, 607
MboI	GATC	5 cut(s)	8, 94, 541, 563, 605
MboII	GAAGA	6 cut(s)	102, 176, 238, 385, 580, 602
MflI	RGATCY	1 cut(s)	8
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	4 cut(s)	45, 117, 176, 228
MluNI	TGGCCA	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	437, 613
MnlI	CCTC	4 cut(s)	138, 338, 439, 476
Mox20I	TGGCCA	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	61
MseI	TTAA	5 cut(s)	74, 153, 213, 363, 531
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	61
MspI	CCGG	2 cut(s)	165, 613
MspR9I	CCNGG	4 cut(s)	63, 165, 255, 613
Mva1269I	GAATGC	1 cut(s)	481
MvaI	CCWGG	2 cut(s)	63, 255
MwoI	GCNNNNNNNGC	1 cut(s)	165
NciI	CCSGG	2 cut(s)	165, 613
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	139
NdeII	GATC	5 cut(s)	8, 94, 541, 563, 605
NlaIII	CATG	2 cut(s)	115, 212
NlaIV	GGNNCC	3 cut(s)	10, 169, 354
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	401
PciI	ACATGT	1 cut(s)	208
PciSI	GCTCTTC	1 cut(s)	251
PctI	GAATGC	1 cut(s)	481
PdmI	GAANNNNTTC	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	106, 109, 640, 643
Ple19I	CGATCG	1 cut(s)	544
PscI	ACATGT	1 cut(s)	208
PshAI	GACNNNNGTC	1 cut(s)	505
Psp6I	CCWGG	2 cut(s)	61, 253
PspGI	CCWGG	2 cut(s)	61, 253
PspN4I	GGNNCC	3 cut(s)	10, 169, 354
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	8
PvuI	CGATCG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	326, 513
RsaNI	GTAC	2 cut(s)	325, 512
RseI	CAYNNNNRTG	1 cut(s)	401
SalI	GTCGAC	1 cut(s)	20
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	5 cut(s)	74, 153, 213, 363, 531
SatI	GCNGC	4 cut(s)	105, 108, 639, 642
Sau3AI	GATC	5 cut(s)	8, 94, 541, 563, 605
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	63, 165, 255, 613
SetI	ASST	9 cut(s)	102, 246, 271, 275, 332, 432, 450, 537, 640
SfaNI	GCATC	1 cut(s)	24
SfcI	CTRYAG	2 cut(s)	105, 289
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	3 cut(s)	262, 549, 617
SmoI	CTYRAG	3 cut(s)	262, 549, 617
Sse9I	AATT	4 cut(s)	45, 117, 176, 228
SsiI	CCGC	1 cut(s)	583
SspMI	CTAG	1 cut(s)	646
StyD4I	CCNGG	4 cut(s)	61, 163, 253, 611
StyI	CCWWGG	2 cut(s)	111, 420
TaaI	ACNGT	2 cut(s)	37, 438
TaiI	ACGT	1 cut(s)	332
TaqI	TCGA	5 cut(s)	21, 130, 516, 544, 566
TasI	AATT	4 cut(s)	45, 117, 176, 228
TatI	WGTACW	1 cut(s)	324
Tru1I	TTAA	5 cut(s)	74, 153, 213, 363, 531
Tru9I	TTAA	5 cut(s)	74, 153, 213, 363, 531
TscAI	CASTG	3 cut(s)	42, 346, 499
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	4 cut(s)	104, 107, 638, 641
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	2 cut(s)	499, 513
TspRI	CASTG	3 cut(s)	42, 346, 499
XapI	RAATTY	2 cut(s)	117, 176
XceI	RCATGY	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.