pycom07g22270

Ubiquinol-cytochrome-c reductase complex assembly factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006864
Physical Location & Seq
Forward (+)
23670801 .. 23673880
3080 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
ATGACGATACAAAATTATTATGACATATTCATTGTGTGCTTTACTGCCTTAGTCCAATTCCCCCACTGCTCGAAACTTTGTAGGTTGAGGAAAAAAAGGGCAAGAGAACATGGGGTTCGCCGGACTTCCACGCCTACGCAGTCGCTCCCGTTAGTTTTTTTACTACGCGCGCTCCTCCTTCCCGCTCCGTTTCTCATTCGCGCACTCCTCTGTAGGGTTTTGGAATCACAAAACTCTCAAGCATTTCCATCAACTGCAACTCAAAACCTTTCGAATTTCAACCTAAGGGAGCTCGAGATGCTGCCGAGATGGAGCAGAGCTGTTGCTCAGCTCTCGAGGCTGGGTACGCAGCAGAACCTGAATCTCAGAAACGAATTCTATGTTGTTTCGCGCCAAACGTATGCCAGGGCTGCTGCAGTTGCTCCCGATACGGCTTTTACTGTGGAAAAACCTCTACCTGCTGAGCCAGTGGTAAATTTGGACAAATTGTTTTGGTCTAAGCCCTCCTCATTGGCTTTGGCCTCGGACTCCCCATTGAGAATTGATGAGCCACAATATGGGAGCTTTAAGCGTGCGATTCTTAGGATGTTGCTGTTTTATAGCAAACAAAGCAAGTCTATTCGAGGGGCTAATGTCGTGTATAAGCGAATTGTTTCACAAGTTGATAAGCCGGGCATCTATGAAGTATTCAATTTGGAGAAAACCTTTAAGACAACGTTCTCTCTACTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAAGAAGAGGGAAAGGATGGTGTTGAATTCGGGCAACACATATATGAGATTTACAATCATGATGTGGAACTTAGGGTGTCTAAGGCTGGGGTCAACTTACTACTGACTAGATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCCGTGCTTCCAGAGGCTAAACTTGATGATCTGCAAAATGTGATATGGAGGAATGTCTTTTCTGACGATGGTTCATCGCAACCAACTGGAGATGCATCACGAGCAGTCCAGGCTATGGCAAGATATATTCGCCGGGAACTTTCTTGCCTGTCCTTAACAGGTATCCCTTGTTTGTTCTTTGTGTTTCCTGTTCTGCATTCGGTTCTGTTGAGATTGCACAAGAACTCTCCATCTCTTCGCGAGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ubiq_cyt_C_chap

Protein Analysis

392

Amino Acids

44.77

Weight (kDa)

9.7

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 229 - 361 1.3e-33 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 466
AccB7I CCANNNNNTGG 2 cut(s) 557, 1042
AccBSI CCGCTC 1 cut(s) 185
AccII CGCG 5 cut(s) 168, 170, 201, 391, 1167
AciI CCGC 1 cut(s) 183
AclI AACGTT 1 cut(s) 716
AcsI RAATTY 4 cut(s) 274, 374, 475, 788
AfaI GTAC 2 cut(s) 346, 732
AfiI CCNNNNNNNGG 3 cut(s) 214, 557, 1042
AgsI TTSAA 4 cut(s) 280, 691, 763, 788
AjnI CCWGG 2 cut(s) 404, 1035
AluBI AGCT 4 cut(s) 292, 320, 331, 564
AluI AGCT 4 cut(s) 292, 320, 331, 564
Alw21I GWGCWC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 358
Ama87I CYCGRG 2 cut(s) 293, 334
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 5 cut(s) 301, 349, 410, 413, 926
ApoI RAATTY 4 cut(s) 274, 374, 475, 788
Asp700I GAANNNNTTC 2 cut(s) 652, 896
AspLEI GCGC 4 cut(s) 170, 172, 203, 393
AsuC2I CCSGG 2 cut(s) 672, 1061
AsuII TTCGAA 1 cut(s) 272
AvaI CYCGRG 2 cut(s) 293, 334
AxyI CCTNAGG 1 cut(s) 284
BanII GRGCYC 1 cut(s) 294
BauI CACGAG 1 cut(s) 1026
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 5 cut(s) 288, 361, 397, 400, 913
BccI CCATC 6 cut(s) 256, 303, 773, 867, 989, 1165
BceAI ACGGC 2 cut(s) 447, 914
BciT130I CCWGG 2 cut(s) 406, 1037
BciVI GTATCC 1 cut(s) 1100
BcnI CCSGG 2 cut(s) 672, 1061
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 2 cut(s) 211, 414
BfuAI ACCTGC 1 cut(s) 466
BfuI GTATCC 1 cut(s) 1100
BisI GCNGC 5 cut(s) 302, 350, 411, 414, 927
BlpI GCTNAGC 2 cut(s) 327, 462
BlsI GCNGC 5 cut(s) 303, 351, 412, 415, 928
Bme1390I CCNGG 4 cut(s) 406, 672, 1037, 1061
BmeT110I CYCGRG 2 cut(s) 293, 334
BmrFI CCNGG 4 cut(s) 406, 672, 1037, 1061
BmsI GCATC 5 cut(s) 288, 684, 913, 1009, 1031
BpmI CTGGAG 1 cut(s) 1035
Bpu1102I GCTNAGC 2 cut(s) 327, 462
Bpu14I TTCGAA 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 222
BpuMI CCSGG 2 cut(s) 672, 1061
BsaJI CCNNGG 2 cut(s) 405, 522
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 557, 1042
Bse118I RCCGGY 1 cut(s) 756
Bse1I ACTGG 2 cut(s) 467, 1018
Bse21I CCTNAGG 1 cut(s) 284
BseBI CCWGG 2 cut(s) 406, 1037
BseDI CCNNGG 2 cut(s) 405, 522
BseGI GGATG 3 cut(s) 591, 784, 882
BseLI CCNNNNNNNGG 3 cut(s) 214, 557, 1042
BseMII CTCAG 3 cut(s) 341, 379, 453
BseNI ACTGG 2 cut(s) 467, 1018
BsePI GCGCGC 1 cut(s) 168
BseRI GAGGAG 3 cut(s) 164, 197, 496
BseXI GCAGC 5 cut(s) 288, 361, 397, 400, 913
BseYI CCCAGC 2 cut(s) 340, 848
Bsh1236I CGCG 5 cut(s) 168, 170, 201, 391, 1167
BshFI GGCC 1 cut(s) 521
BsiHKAI GWGCWC 1 cut(s) 294
BsiHKCI CYCGRG 2 cut(s) 293, 334
BsiSI CCGG 4 cut(s) 121, 671, 757, 1060
BslI CCNNNNNNNGG 3 cut(s) 214, 557, 1042
BsmI GAATGC 1 cut(s) 1123
BsnI GGCC 1 cut(s) 521
BsoBI CYCGRG 2 cut(s) 293, 334
Bsp119I TTCGAA 1 cut(s) 272
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 1 cut(s) 955
Bsp1720I GCTNAGC 2 cut(s) 327, 462
Bsp68I TCGCGA 1 cut(s) 1167
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 3 cut(s) 340, 378, 454
BspFNI CGCG 5 cut(s) 168, 170, 201, 391, 1167
BspHI TCATGA 1 cut(s) 820
BspMAI CTGCAG 1 cut(s) 418
BspMI ACCTGC 1 cut(s) 466
BspT104I TTCGAA 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 756
BsrI ACTGG 2 cut(s) 467, 1018
BssAI RCCGGY 1 cut(s) 756
BssECI CCNNGG 2 cut(s) 405, 522
BssHII GCGCGC 1 cut(s) 168
BssMI GATC 1 cut(s) 955
BssSI CACGAG 1 cut(s) 1026
Bst2BI CACGAG 1 cut(s) 1026
Bst2UI CCWGG 2 cut(s) 406, 1037
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 2 cut(s) 762, 1167
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 170, 573
BstDEI CTNAG 9 cut(s) 49, 284, 327, 365, 462, 498, 581, 833, 843
BstF5I GGATG 3 cut(s) 591, 784, 882
BstFNI CGCG 5 cut(s) 168, 170, 201, 391, 1167
BstHHI GCGC 4 cut(s) 170, 172, 203, 393
BstKTI GATC 1 cut(s) 958
BstMBI GATC 1 cut(s) 955
BstMWI GCNNNNNNNGC 9 cut(s) 298, 337, 346, 410, 419, 609, 923, 1028, 1037
BstNI CCWGG 2 cut(s) 406, 1037
BstSCI CCNGG 4 cut(s) 404, 670, 1035, 1059
BstSFI CTRYAG 2 cut(s) 211, 414
BstUI CGCG 5 cut(s) 168, 170, 201, 391, 1167
BstV1I GCAGC 5 cut(s) 288, 361, 397, 400, 913
Bsu36I CCTNAGG 1 cut(s) 284
BsuI GTATCC 1 cut(s) 1100
BsuRI GGCC 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 987
BtsCI GGATG 3 cut(s) 591, 784, 882
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 2 cut(s) 64, 474
BtuMI TCGCGA 1 cut(s) 1167
BveI ACCTGC 1 cut(s) 466
Cac8I GCNNGC 2 cut(s) 170, 573
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 820
CfoI GCGC 4 cut(s) 170, 172, 203, 393
Cfr10I RCCGGY 1 cut(s) 756
Csp6I GTAC 2 cut(s) 345, 731
CviAII CATG 2 cut(s) 110, 821
CviQI GTAC 2 cut(s) 345, 731
DdeI CTNAG 9 cut(s) 49, 284, 327, 365, 462, 498, 581, 833, 843
DpnI GATC 1 cut(s) 957
DpnII GATC 1 cut(s) 955
Eam1104I CTCTTC 2 cut(s) 762, 1167
EarI CTCTTC 2 cut(s) 762, 1167
Ecl136II GAGCTC 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 294
Eco53kI GAGCTC 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 284
Eco88I CYCGRG 2 cut(s) 293, 334
EcoICRI GAGCTC 1 cut(s) 292
EcoRI GAATTC 2 cut(s) 374, 788
EcoRII CCWGG 2 cut(s) 404, 1035
EcoT22I ATGCAT 1 cut(s) 1024
EcoT38I GRGCYC 1 cut(s) 294
FaeI CATG 2 cut(s) 113, 824
FatI CATG 2 cut(s) 109, 820
FauI CCCGC 1 cut(s) 190
FauNDI CATATG 1 cut(s) 738
Fnu4HI GCNGC 5 cut(s) 302, 350, 411, 414, 927
FokI GGATG 3 cut(s) 598, 791, 889
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 5 cut(s) 302, 350, 411, 414, 927
FspBI CTAG 1 cut(s) 870
GlaI GCGC 4 cut(s) 169, 171, 202, 392
GluI GCNGC 5 cut(s) 302, 350, 411, 414, 927
GsaI CCCAGC 2 cut(s) 344, 852
GsuI CTGGAG 1 cut(s) 1035
HaeIII GGCC 1 cut(s) 521
HapII CCGG 4 cut(s) 121, 671, 757, 1060
HhaI GCGC 4 cut(s) 170, 172, 203, 393
Hin1II CATG 2 cut(s) 113, 824
Hin6I GCGC 4 cut(s) 168, 170, 201, 391
HinP1I GCGC 4 cut(s) 168, 170, 201, 391
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 4 cut(s) 224, 361, 527, 577
HpaII CCGG 4 cut(s) 121, 671, 757, 1060
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 3 cut(s) 368, 526, 991
Hpy188III TCNNGA 7 cut(s) 295, 334, 425, 821, 938, 1026, 1166
Hpy8I GTNNAC 1 cut(s) 856
HpyAV CCTTC 2 cut(s) 188, 874
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 2 cut(s) 398, 716
HpyCH4V TGCA 6 cut(s) 257, 416, 961, 1022, 1123, 1144
HpyF10VI GCNNNNNNNGC 9 cut(s) 298, 337, 346, 410, 419, 609, 923, 1028, 1037
HpyF3I CTNAG 9 cut(s) 49, 284, 327, 365, 462, 498, 581, 833, 843
HpySE526I ACGT 2 cut(s) 398, 716
Hsp92II CATG 2 cut(s) 113, 824
HspAI GCGC 4 cut(s) 168, 170, 201, 391
Kzo9I GATC 1 cut(s) 955
LmnI GCTCC 7 cut(s) 150, 177, 190, 289, 312, 427, 561
Lsp1109I GCAGC 5 cut(s) 288, 361, 397, 400, 913
LweI GCATC 5 cut(s) 288, 684, 913, 1009, 1031
MaeI CTAG 1 cut(s) 870
MaeII ACGT 2 cut(s) 398, 716
MalI GATC 1 cut(s) 957
MbiI CCGCTC 1 cut(s) 185
MboI GATC 1 cut(s) 955
MboII GAAGA 3 cut(s) 779, 904, 1154
MhlI GDGCHC 1 cut(s) 294
MlyI GAGTC 1 cut(s) 521
Mph1103I ATGCAT 1 cut(s) 1024
MroXI GAANNNNTTC 2 cut(s) 652, 896
MseI TTAA 3 cut(s) 567, 708, 1082
MslI CAYNNNNRTG 1 cut(s) 804
MspI CCGG 4 cut(s) 121, 671, 757, 1060
MspR9I CCNGG 4 cut(s) 406, 672, 1037, 1061
Mva1269I GAATGC 1 cut(s) 1123
MvaI CCWGG 2 cut(s) 406, 1037
MvnI CGCG 5 cut(s) 168, 170, 201, 391, 1167
MwoI GCNNNNNNNGC 9 cut(s) 298, 337, 346, 410, 419, 609, 923, 1028, 1037
NciI CCSGG 2 cut(s) 672, 1061
NdeI CATATG 1 cut(s) 738
NdeII GATC 1 cut(s) 955
NlaIII CATG 2 cut(s) 113, 824
NmeAIII GCCGAG 1 cut(s) 330
NruI TCGCGA 1 cut(s) 1167
NsiI ATGCAT 1 cut(s) 1024
NspV TTCGAA 1 cut(s) 272
PaeR7I CTCGAG 2 cut(s) 293, 334
PagI TCATGA 1 cut(s) 820
PauI GCGCGC 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PctI GAATGC 1 cut(s) 1123
PdmI GAANNNNTTC 2 cut(s) 652, 896
PfeI GAWTC 3 cut(s) 224, 361, 577
PflMI CCANNNNNTGG 2 cut(s) 557, 1042
PkrI GCNGC 5 cut(s) 303, 351, 412, 415, 928
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 294
Psp1406I AACGTT 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 404, 1035
PspFI CCCAGC 2 cut(s) 340, 848
PspGI CCWGG 2 cut(s) 404, 1035
PstI CTGCAG 1 cut(s) 418
PstNI CAGNNNCTG 1 cut(s) 358
PteI GCGCGC 1 cut(s) 168
RruI TCGCGA 1 cut(s) 1167
RsaI GTAC 2 cut(s) 346, 732
RsaNI GTAC 2 cut(s) 345, 731
RseI CAYNNNNRTG 1 cut(s) 804
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 567, 708, 1082
SatI GCNGC 5 cut(s) 302, 350, 411, 414, 927
Sau3AI GATC 1 cut(s) 955
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 4 cut(s) 406, 672, 1037, 1061
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 5 cut(s) 288, 684, 913, 1009, 1031
SfcI CTRYAG 2 cut(s) 211, 414
Sfr274I CTCGAG 2 cut(s) 293, 334
SfuI TTCGAA 1 cut(s) 272
SlaI CTCGAG 2 cut(s) 293, 334
SmiMI CAYNNNNRTG 1 cut(s) 804
SmlI CTYRAG 3 cut(s) 237, 293, 334
SmoI CTYRAG 3 cut(s) 237, 293, 334
SsiI CCGC 1 cut(s) 183
SspI AATATT 1 cut(s) 910
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 4 cut(s) 404, 670, 1035, 1059
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 2 cut(s) 401, 719
TaqI TCGA 5 cut(s) 71, 272, 294, 335, 622
TatI WGTACW 1 cut(s) 730
TfiI GAWTC 3 cut(s) 224, 361, 577
Tru1I TTAA 3 cut(s) 567, 708, 1082
Tru9I TTAA 3 cut(s) 567, 708, 1082
TscAI CASTG 2 cut(s) 71, 474
TseI GCWGC 5 cut(s) 301, 349, 410, 413, 926
TspDTI ATGAA 5 cut(s) 19, 696, 725, 893, 990
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 71, 474
Van91I CCANNNNNTGG 2 cut(s) 557, 1042
XapI RAATTY 4 cut(s) 274, 374, 475, 788
XhoI CTCGAG 2 cut(s) 293, 334
XmnI GAANNNNTTC 2 cut(s) 652, 896
XspI CTAG 1 cut(s) 870
Zsp2I ATGCAT 1 cut(s) 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.