pycom07g23570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0014830
Physical Location & Seq
Reverse (-)
24438373 .. 24438862
490 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23570.1

Sequence Viewer

Length: 399 bp
ATGGACAAAAGTGAAGCTTGCAGCCAATCAAAAAGAAAGAAGAAAAGAAAAGAAAAAAAAAAAGGGAAGAAAGCTTCCCGTGCACCCATACCCGCACCACCGCGAGTCCATCTTCCAAGGCCGATTCCGGCCAACTCCGGTGGAGTTTTTCGATGCCACCACCACCATCTTGAAGCTCTCATTCCCCTCTACAAAACCCACCCAAGAACCACCTTGATTGACCATGGTATGAGACGGTTTGAGGCCACGAAAGTTGACGAAAATCAATGGTGCTCCGGCCACGCTTTTCGATTTTCCGGCAAATCGGCAAAGCAATGGCCGATGCCACCACTTGGGCTTTGTAGCCCATCATCCCAGGAGCAAAACCCAACCAACCTTGACCCCGTTGGACCATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.82

Weight (kDa)

10.23

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 332
AccII CGCG 1 cut(s) 103
AciI CCGC 2 cut(s) 93, 101
AcoI YGGCCR 3 cut(s) 129, 277, 317
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 1 cut(s) 173
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 3 cut(s) 17, 74, 176
AluI AGCT 3 cut(s) 17, 74, 176
Alw21I GWGCWC 2 cut(s) 85, 275
Alw26I GTCTC 1 cut(s) 226
Alw44I GTGCAC 1 cut(s) 81
AoxI GGCC 5 cut(s) 119, 129, 243, 277, 317
ApaLI GTGCAC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 389
AvaII GGWCC 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 85
Bbv12I GWGCWC 2 cut(s) 85, 275
BbvI GCAGC 1 cut(s) 33
BccI CCATC 3 cut(s) 117, 174, 355
BciT130I CCWGG 1 cut(s) 356
BcoDI GTCTC 1 cut(s) 226
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 389
BmgT120I GGNCC 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 2 cut(s) 143, 312
BsaJI CCNNGG 3 cut(s) 116, 223, 354
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 3 cut(s) 116, 223, 354
BseGI GGATG 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMI GCAATG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 1 cut(s) 33
Bsh1236I CGCG 1 cut(s) 103
BshFI GGCC 5 cut(s) 121, 131, 245, 279, 319
BsiHKAI GWGCWC 2 cut(s) 85, 275
BsiSI CCGG 4 cut(s) 128, 138, 276, 297
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 226
BsmBI CGTCTC 1 cut(s) 226
BsnI GGCC 5 cut(s) 121, 131, 245, 279, 319
Bsp1286I GDGCHC 2 cut(s) 85, 275
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 2 cut(s) 93, 101
BspANI GGCC 5 cut(s) 121, 131, 245, 279, 319
BspFNI CGCG 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 320
BssECI CCNNGG 3 cut(s) 116, 223, 354
BssT1I CCWWGG 2 cut(s) 116, 223
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 19
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 1 cut(s) 350
BstFNI CGCG 1 cut(s) 103
BstMAI GTCTC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 1 cut(s) 103
BstV1I GCAGC 1 cut(s) 33
BsuRI GGCC 5 cut(s) 121, 131, 245, 279, 319
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 1 cut(s) 350
Cac8I GCNNGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 389
CspCI CAANNNNNGTGG 6 cut(s) 121, 156, 199, 234, 235, 270
CviAII CATG 1 cut(s) 224
EaeI YGGCCR 3 cut(s) 129, 277, 317
Eco130I CCWWGG 2 cut(s) 116, 223
Eco47I GGWCC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 2 cut(s) 116, 223
ErhI CCWWGG 2 cut(s) 116, 223
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 1 cut(s) 227
FaiI YATR 3 cut(s) 89, 225, 230
FalI AAGNNNNNCTT 1 cut(s) 33
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 22
HaeIII GGCC 5 cut(s) 121, 131, 245, 279, 319
HapII CCGG 4 cut(s) 128, 138, 276, 297
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 2 cut(s) 15, 72
HinfI GANTC 2 cut(s) 105, 124
HpaII CCGG 4 cut(s) 128, 138, 276, 297
Hpy166II GTNNAC 2 cut(s) 83, 256
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 2 cut(s) 83, 256
HpyCH4III ACNGT 1 cut(s) 237
HpyCH4V TGCA 2 cut(s) 21, 83
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 1 cut(s) 227
LmnI GCTCC 2 cut(s) 278, 358
LpnPI CCDG 6 cut(s) 141, 151, 289, 310, 341, 368
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 2 cut(s) 143, 312
MboII GAAGA 3 cut(s) 52, 79, 104
MhlI GDGCHC 2 cut(s) 85, 275
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 2 cut(s) 197, 235
MspI CCGG 4 cut(s) 128, 138, 276, 297
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 223
NlaIII CATG 1 cut(s) 227
PfeI GAWTC 1 cut(s) 124
PflMI CCANNNNNTGG 1 cut(s) 332
PkrI GCNGC 1 cut(s) 23
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspPI GGNCC 1 cut(s) 389
SatI GCNGC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 2 cut(s) 85, 275
SetI ASST 5 cut(s) 19, 76, 178, 215, 378
SfaNI GCATC 2 cut(s) 143, 312
SinI GGWCC 1 cut(s) 389
SsiI CCGC 2 cut(s) 93, 101
StyD4I CCNGG 1 cut(s) 354
StyI CCWWGG 2 cut(s) 116, 223
TaaI ACNGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 151, 289
TfiI GAWTC 1 cut(s) 124
TseI GCWGC 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 332
VneI GTGCAC 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.