pycom12681g00030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012681
OG0014830
Physical Location & Seq
Forward (+)
19556 .. 20056
501 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12681g00030.1

Sequence Viewer

Length: 393 bp
ATGGACCCAATCAAAAAGAAAGAAGAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAGGGAAGAAAGCTTCCCGTGCACCCATACCCGCACCACCGCGAGTCCATCTTCCAAGGCCGATTCCGGCCAACTCCGGTGGAGTTTTTGGATGCCACCACCACCATCTTGAAGCTCTCATTCCCCTCTACAAAACCCACCCAAGAACCACCTTGATTAACCATGGTATGGGGCGGTTTGAGGCCACGAAAGTTGACGAAAATCAATGGTGCTCCGGCCACCCTTTTCGATTTTCCGGCAAATCGGCAAAGCAATGGCCGATGCCACCACTTGGGCTTTGTAGCCCATCATCCCAGGAGCAAAAACCAACCAACCTTGACCTCGTTGGACCACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.56

Weight (kDa)

10.27

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 223, 326
AccII CGCG 1 cut(s) 97
AciI CCGC 3 cut(s) 87, 95, 229
AcoI YGGCCR 3 cut(s) 123, 271, 311
AfiI CCNNNNNNNGG 2 cut(s) 223, 326
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 2 cut(s) 68, 170
AluI AGCT 2 cut(s) 68, 170
Alw21I GWGCWC 2 cut(s) 79, 269
Alw44I GTGCAC 1 cut(s) 75
AoxI GGCC 5 cut(s) 113, 123, 237, 271, 311
ApaLI GTGCAC 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 4, 383
AvaII GGWCC 2 cut(s) 4, 383
BaeGI GKGCMC 1 cut(s) 79
Bbv12I GWGCWC 2 cut(s) 79, 269
BccI CCATC 3 cut(s) 111, 168, 349
BciT130I CCWGG 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 2 cut(s) 4, 383
BmgT120I GGNCC 2 cut(s) 4, 383
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 2 cut(s) 137, 306
BsaJI CCNNGG 3 cut(s) 110, 217, 348
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 326
Bse3DI GCAATG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 110, 217, 348
BseGI GGATG 2 cut(s) 152, 344
BseLI CCNNNNNNNGG 2 cut(s) 223, 326
BseMI GCAATG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 97
BshFI GGCC 5 cut(s) 115, 125, 239, 273, 313
BsiHKAI GWGCWC 2 cut(s) 79, 269
BsiSI CCGG 4 cut(s) 122, 132, 270, 291
BslI CCNNNNNNNGG 2 cut(s) 223, 326
BsnI GGCC 5 cut(s) 115, 125, 239, 273, 313
Bsp1286I GDGCHC 2 cut(s) 79, 269
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 3 cut(s) 87, 95, 229
BspANI GGCC 5 cut(s) 115, 125, 239, 273, 313
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 110, 217, 348
BssT1I CCWWGG 2 cut(s) 110, 217
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 390
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 152, 344
BstFNI CGCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 97
BsuRI GGCC 5 cut(s) 115, 125, 239, 273, 313
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 152, 344
Cfr13I GGNCC 2 cut(s) 4, 383
CspCI CAANNNNNGTGG 4 cut(s) 115, 150, 229, 264
CviAII CATG 1 cut(s) 218
CviJI RGCY 9 cut(s) 68, 115, 125, 170, 239, 273, 313, 331, 339
CviKI_1 RGCY 9 cut(s) 68, 115, 125, 170, 239, 273, 313, 331, 339
EaeI YGGCCR 3 cut(s) 123, 271, 311
Eco130I CCWWGG 2 cut(s) 110, 217
Eco47I GGWCC 2 cut(s) 4, 383
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 110, 217
ErhI CCWWGG 2 cut(s) 110, 217
FaeI CATG 1 cut(s) 221
FaiI YATR 3 cut(s) 83, 219, 224
FatI CATG 1 cut(s) 217
FauI CCCGC 1 cut(s) 94
FokI GGATG 2 cut(s) 159, 331
HaeIII GGCC 5 cut(s) 115, 125, 239, 273, 313
HapII CCGG 4 cut(s) 122, 132, 270, 291
Hin1II CATG 1 cut(s) 221
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HindIII AAGCTT 1 cut(s) 66
HinfI GANTC 2 cut(s) 99, 118
HpaII CCGG 4 cut(s) 122, 132, 270, 291
Hpy166II GTNNAC 2 cut(s) 77, 250
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 77, 250
HpyCH4III ACNGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 221
LmnI GCTCC 2 cut(s) 272, 352
LpnPI CCDG 6 cut(s) 135, 145, 283, 304, 335, 362
LweI GCATC 2 cut(s) 137, 306
MboII GAAGA 3 cut(s) 35, 73, 98
MhlI GDGCHC 2 cut(s) 79, 269
MlyI GAGTC 1 cut(s) 108
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 3 cut(s) 191, 229, 386
MseI TTAA 1 cut(s) 213
MspI CCGG 4 cut(s) 122, 132, 270, 291
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 74
NcoI CCATGG 1 cut(s) 217
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 118
PflMI CCANNNNNTGG 2 cut(s) 223, 326
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 4, 383
SaqAI TTAA 1 cut(s) 213
Sau96I GGNCC 2 cut(s) 4, 383
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 2 cut(s) 79, 269
SetI ASST 5 cut(s) 70, 172, 209, 372, 378
SfaNI GCATC 2 cut(s) 137, 306
SinI GGWCC 2 cut(s) 4, 383
SsiI CCGC 3 cut(s) 87, 95, 229
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 2 cut(s) 110, 217
TaaI ACNGT 1 cut(s) 390
TaqI TCGA 1 cut(s) 283
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
Van91I CCANNNNNTGG 2 cut(s) 223, 326
VneI GTGCAC 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 4, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.