pycom10g16840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014830
Physical Location & Seq
Reverse (-)
20062735 .. 20063222
488 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g16840.1

Sequence Viewer

Length: 402 bp
ATGGACAAAATAAAAGTGAAGCTTGCAGCCAATCAAAAAGAAAGAAGAAAAGGAAAAAAAAAAAAAGGGAAGAGAGCTTCCCGTGCACCCATACCCGCACCACCGCGAGTCCATCTTCCAAGGCCGATTCCGGCCAACTCCGGTGGAGTTTTTCGATGCCACCACCACCATCTTGAAGCTCTCATTCCCCTCTACAAAACCCACCCAAGAACCACCTTGATTAACCATGGTATGGGGCGGTTTGAGGCCACGAAAGTTGACGAAAATCAATGGTGCTCCGGCCATCCTTTTCGATTTTCCGGCAAATCGGCAAAGCAATGGCCGATGCCACCACTTGGGCTTTGTAGCCCATCATCCCAGGAACAAAACCCAACCAACCTTGACCCCGTTGGACCACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.86

Weight (kDa)

10.56

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 232, 335
AccII CGCG 1 cut(s) 106
AciI CCGC 3 cut(s) 96, 104, 238
AcoI YGGCCR 3 cut(s) 132, 280, 320
AfiI CCNNNNNNNGG 2 cut(s) 232, 335
AgsI TTSAA 1 cut(s) 176
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 3 cut(s) 22, 77, 179
AluI AGCT 3 cut(s) 22, 77, 179
Alw21I GWGCWC 2 cut(s) 88, 278
Alw44I GTGCAC 1 cut(s) 84
AoxI GGCC 5 cut(s) 122, 132, 246, 280, 320
ApaLI GTGCAC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 392
AvaII GGWCC 1 cut(s) 392
BaeGI GKGCMC 1 cut(s) 88
Bbv12I GWGCWC 2 cut(s) 88, 278
BbvI GCAGC 1 cut(s) 38
BccI CCATC 4 cut(s) 120, 177, 291, 358
BciT130I CCWGG 1 cut(s) 359
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 359
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmrFI CCNGG 1 cut(s) 359
BmsI GCATC 2 cut(s) 146, 315
BsaJI CCNNGG 3 cut(s) 119, 226, 357
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 335
Bse3DI GCAATG 1 cut(s) 323
BseBI CCWGG 1 cut(s) 359
BseDI CCNNGG 3 cut(s) 119, 226, 357
BseGI GGATG 2 cut(s) 283, 353
BseLI CCNNNNNNNGG 2 cut(s) 232, 335
BseMI GCAATG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 88
BseXI GCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 106
BshFI GGCC 5 cut(s) 124, 134, 248, 282, 322
BsiHKAI GWGCWC 2 cut(s) 88, 278
BsiSI CCGG 4 cut(s) 131, 141, 279, 300
BslI CCNNNNNNNGG 2 cut(s) 232, 335
BsnI GGCC 5 cut(s) 124, 134, 248, 282, 322
Bsp1286I GDGCHC 2 cut(s) 88, 278
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 3 cut(s) 96, 104, 238
BspANI GGCC 5 cut(s) 124, 134, 248, 282, 322
BspFNI CGCG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 119, 226, 357
BssT1I CCWWGG 2 cut(s) 119, 226
Bst2UI CCWGG 1 cut(s) 359
Bst4CI ACNGT 1 cut(s) 399
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 2 cut(s) 283, 353
BstFNI CGCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 88
BstUI CGCG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 38
BsuRI GGCC 5 cut(s) 124, 134, 248, 282, 322
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 2 cut(s) 283, 353
Cac8I GCNNGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 392
CspCI CAANNNNNGTGG 4 cut(s) 124, 159, 238, 273
CviAII CATG 1 cut(s) 227
EaeI YGGCCR 3 cut(s) 132, 280, 320
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 119, 226
Eco47I GGWCC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 357
EcoT14I CCWWGG 2 cut(s) 119, 226
ErhI CCWWGG 2 cut(s) 119, 226
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 92, 228, 233
FalI AAGNNNNNCTT 1 cut(s) 38
FatI CATG 1 cut(s) 226
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 270, 340
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 5 cut(s) 124, 134, 248, 282, 322
HapII CCGG 4 cut(s) 131, 141, 279, 300
Hin1II CATG 1 cut(s) 230
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 2 cut(s) 108, 127
HpaII CCGG 4 cut(s) 131, 141, 279, 300
Hpy166II GTNNAC 2 cut(s) 86, 259
Hpy188III TCNNGA 1 cut(s) 173
Hpy8I GTNNAC 2 cut(s) 86, 259
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 2 cut(s) 26, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92II CATG 1 cut(s) 230
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 6 cut(s) 144, 154, 292, 313, 344, 371
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 2 cut(s) 146, 315
MboII GAAGA 3 cut(s) 57, 82, 107
MhlI GDGCHC 2 cut(s) 88, 278
MlyI GAGTC 1 cut(s) 117
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 2 cut(s) 200, 238
MseI TTAA 1 cut(s) 222
MspI CCGG 4 cut(s) 131, 141, 279, 300
MspR9I CCNGG 1 cut(s) 359
MvaI CCWGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 83
NcoI CCATGG 1 cut(s) 226
NlaIII CATG 1 cut(s) 230
PfeI GAWTC 1 cut(s) 127
PflMI CCANNNNNTGG 2 cut(s) 232, 335
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 357
PspGI CCWGG 1 cut(s) 357
PspPI GGNCC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 359
SduI GDGCHC 2 cut(s) 88, 278
SetI ASST 5 cut(s) 24, 79, 181, 218, 381
SfaNI GCATC 2 cut(s) 146, 315
SinI GGWCC 1 cut(s) 392
SsiI CCGC 3 cut(s) 96, 104, 238
StyD4I CCNGG 1 cut(s) 357
StyI CCWWGG 2 cut(s) 119, 226
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 154, 292
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TseI GCWGC 1 cut(s) 26
Van91I CCANNNNNTGG 2 cut(s) 232, 335
VneI GTGCAC 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.