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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom01g03710 pycom06g05490 pycom07g23570 pycom08g11140 pycom08g20710 pycom10g07390 pycom10g16840 pycom12681g00030 pycom12g15410 pycom12g17710 pycom13g06880 pycom13g21450 pycom13g24120 pycom1481g00070 pycom15g32840 pycom17g16020 pycom520g00630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 864, 1728 |
| Acc36I | ACCTGC | 2 cut(s) | 111, 1280 |
| AccB1I | GGYRCC | 1 cut(s) | 1230 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1175 |
| AccI | GTMKAC | 1 cut(s) | 136 |
| AccII | CGCG | 1 cut(s) | 1352 |
| AccIII | TCCGGA | 1 cut(s) | 1578 |
| AciI | CCGC | 4 cut(s) | 659, 1060, 1347, 1516 |
| AclI | AACGTT | 1 cut(s) | 1722 |
| AclWI | GGATC | 6 cut(s) | 268, 1458, 1497, 1515, 1541, 1560 |
| AcoI | YGGCCR | 2 cut(s) | 1160, 1355 |
| AcsI | RAATTY | 3 cut(s) | 1041, 1396, 1504 |
| AcuI | CTGAAG | 1 cut(s) | 306 |
| AcyI | GRCGYC | 1 cut(s) | 1051 |
| AfaI | GTAC | 6 cut(s) | 474, 526, 902, 1638, 1690, 1815 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 94, 671, 1175, 1447, 1530, 1810 |
| AflIII | ACRYGT | 1 cut(s) | 527 |
| AgsI | TTSAA | 7 cut(s) | 74, 1070, 1279, 1504, 1510, 1544, 1735 |
| AjnI | CCWGG | 1 cut(s) | 1197 |
| AluBI | AGCT | 3 cut(s) | 320, 975, 1224 |
| AluI | AGCT | 3 cut(s) | 320, 975, 1224 |
| Alw26I | GTCTC | 3 cut(s) | 421, 661, 1826 |
| AlwI | GGATC | 6 cut(s) | 268, 1458, 1497, 1515, 1541, 1560 |
| Ama87I | CYCGRG | 1 cut(s) | 93 |
| Aor13HI | TCCGGA | 1 cut(s) | 1578 |
| AoxI | GGCC | 8 cut(s) | 299, 551, 1016, 1026, 1086, 1160, 1355, 1642 |
| ApeKI | GCWGC | 3 cut(s) | 912, 915, 1844 |
| ApoI | RAATTY | 3 cut(s) | 1041, 1396, 1504 |
| AspLEI | GCGC | 1 cut(s) | 1352 |
| AspS9I | GGNCC | 3 cut(s) | 299, 1363, 1642 |
| AsuC2I | CCSGG | 3 cut(s) | 94, 95, 1473 |
| AsuHPI | GGTGA | 5 cut(s) | 38, 108, 520, 1185, 1448 |
| AvaI | CYCGRG | 1 cut(s) | 93 |
| AvaII | GGWCC | 1 cut(s) | 1363 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 464, 497 |
| BalI | TGGCCA | 1 cut(s) | 1357 |
| BanI | GGYRCC | 1 cut(s) | 1230 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 193, 225 |
| BauI | CACGAG | 1 cut(s) | 353 |
| BbvI | GCAGC | 2 cut(s) | 924, 927 |
| BccI | CCATC | 7 cut(s) | 338, 590, 816, 1071, 1152, 1198, 1268 |
| BceAI | ACGGC | 3 cut(s) | 432, 672, 1360 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 331, 365 |
| BciT130I | CCWGG | 1 cut(s) | 1199 |
| BciVI | GTATCC | 3 cut(s) | 18, 205, 492 |
| BcnI | CCSGG | 3 cut(s) | 94, 95, 1473 |
| BcoDI | GTCTC | 3 cut(s) | 421, 661, 1826 |
| BfaI | CTAG | 3 cut(s) | 8, 317, 779 |
| BfuAI | ACCTGC | 2 cut(s) | 111, 1280 |
| BfuI | GTATCC | 3 cut(s) | 18, 205, 492 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 782, 1148 |
| BglII | AGATCT | 2 cut(s) | 434, 1317 |
| BisI | GCNGC | 4 cut(s) | 913, 916, 1348, 1845 |
| BlsI | GCNGC | 4 cut(s) | 914, 917, 1349, 1846 |
| BmcAI | AGTACT | 1 cut(s) | 1638 |
| Bme1390I | CCNGG | 4 cut(s) | 94, 95, 1199, 1473 |
| Bme18I | GGWCC | 1 cut(s) | 1363 |
| BmeT110I | CYCGRG | 1 cut(s) | 93 |
| BmgT120I | GGNCC | 3 cut(s) | 299, 1363, 1642 |
| BmiI | GGNNCC | 4 cut(s) | 300, 663, 1232, 1391 |
| BmrFI | CCNGG | 4 cut(s) | 94, 95, 1199, 1473 |
| BmrI | ACTGGG | 2 cut(s) | 680, 1649 |
| BmsI | GCATC | 4 cut(s) | 1102, 1155, 1557, 1831 |
| BmuI | ACTGGG | 2 cut(s) | 680, 1649 |
| BpuMI | CCSGG | 3 cut(s) | 94, 95, 1473 |
| Bsa29I | ATCGAT | 1 cut(s) | 1797 |
| BsaAI | YACGTR | 3 cut(s) | 1245, 1592, 1817 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1571, 1709 |
| BsaHI | GRCGYC | 1 cut(s) | 1051 |
| BsaJI | CCNNGG | 5 cut(s) | 93, 156, 624, 1013, 1197 |
| BsaWI | WCCGGW | 2 cut(s) | 1330, 1578 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 492, 522 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 94, 671, 1175, 1447, 1530, 1810 |
| Bse118I | RCCGGY | 1 cut(s) | 1237 |
| Bse1I | ACTGG | 3 cut(s) | 573, 675, 1644 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1571, 1709 |
| BseAI | TCCGGA | 1 cut(s) | 1578 |
| BseBI | CCWGG | 1 cut(s) | 1199 |
| BseCI | ATCGAT | 1 cut(s) | 1797 |
| BseDI | CCNNGG | 5 cut(s) | 93, 156, 624, 1013, 1197 |
| BseGI | GGATG | 3 cut(s) | 483, 680, 1603 |
| BseJI | GATNNNNATC | 2 cut(s) | 1571, 1709 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 94, 671, 1175, 1447, 1530, 1810 |
| BseMII | CTCAG | 2 cut(s) | 198, 422 |
| BseNI | ACTGG | 3 cut(s) | 573, 675, 1644 |
| BseXI | GCAGC | 2 cut(s) | 924, 927 |
| BseYI | CCCAGC | 1 cut(s) | 971 |
| Bsh1236I | CGCG | 1 cut(s) | 1352 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1335, 1445, 1528 |
| BshFI | GGCC | 8 cut(s) | 301, 553, 1018, 1028, 1088, 1162, 1357, 1644 |
| BshNI | GGYRCC | 1 cut(s) | 1230 |
| BshVI | ATCGAT | 1 cut(s) | 1797 |
| BsiEI | CGRYCG | 3 cut(s) | 1335, 1445, 1528 |
| BsiHKCI | CYCGRG | 1 cut(s) | 93 |
| BsiSI | CCGG | 5 cut(s) | 94, 1238, 1331, 1472, 1579 |
| BslFI | GGGAC | 2 cut(s) | 49, 110 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 94, 671, 1175, 1447, 1530, 1810 |
| BsmAI | GTCTC | 3 cut(s) | 421, 661, 1826 |
| BsmBI | CGTCTC | 1 cut(s) | 1826 |
| BsmFI | GGGAC | 2 cut(s) | 49, 110 |
| BsmI | GAATGC | 2 cut(s) | 1482, 1763 |
| BsnI | GGCC | 8 cut(s) | 301, 553, 1018, 1028, 1088, 1162, 1357, 1644 |
| BsoBI | CYCGRG | 1 cut(s) | 93 |
| Bsp13I | TCCGGA | 1 cut(s) | 1578 |
| Bsp1407I | TGTACA | 2 cut(s) | 524, 1688 |
| BspACI | CCGC | 4 cut(s) | 659, 1060, 1347, 1516 |
| BspANI | GGCC | 8 cut(s) | 301, 553, 1018, 1028, 1088, 1162, 1357, 1644 |
| BspCNI | CTCAG | 2 cut(s) | 197, 423 |
| BspDI | ATCGAT | 1 cut(s) | 1797 |
| BspEI | TCCGGA | 1 cut(s) | 1578 |
| BspFNI | CGCG | 1 cut(s) | 1352 |
| BspLI | GGNNCC | 4 cut(s) | 300, 663, 1232, 1391 |
| BspMI | ACCTGC | 2 cut(s) | 111, 1280 |
| BspPI | GGATC | 6 cut(s) | 268, 1458, 1497, 1515, 1541, 1560 |
| BspT107I | GGYRCC | 1 cut(s) | 1230 |
| BsrFI | RCCGGY | 1 cut(s) | 1237 |
| BsrGI | TGTACA | 2 cut(s) | 524, 1688 |
| BsrI | ACTGG | 3 cut(s) | 573, 675, 1644 |
| BssAI | RCCGGY | 1 cut(s) | 1237 |
| BssECI | CCNNGG | 5 cut(s) | 93, 156, 624, 1013, 1197 |
| BssNI | GRCGYC | 1 cut(s) | 1051 |
| BssSI | CACGAG | 1 cut(s) | 353 |
| BssT1I | CCWWGG | 2 cut(s) | 156, 1013 |
| Bst2BI | CACGAG | 1 cut(s) | 353 |
| Bst2UI | CCWGG | 1 cut(s) | 1199 |
| Bst4CI | ACNGT | 5 cut(s) | 869, 1103, 1367, 1446, 1529 |
| Bst6I | CTCTTC | 1 cut(s) | 48 |
| BstACI | GRCGYC | 1 cut(s) | 1051 |
| BstAUI | TGTACA | 2 cut(s) | 524, 1688 |
| BstBAI | YACGTR | 3 cut(s) | 1245, 1592, 1817 |
| BstC8I | GCNNGC | 1 cut(s) | 987 |
| BstDEI | CTNAG | 2 cut(s) | 184, 431 |
| BstF5I | GGATG | 3 cut(s) | 483, 680, 1603 |
| BstFNI | CGCG | 1 cut(s) | 1352 |
| BstHHI | GCGC | 1 cut(s) | 1352 |
| BstMAI | GTCTC | 3 cut(s) | 421, 661, 1826 |
| BstMCI | CGRYCG | 3 cut(s) | 1335, 1445, 1528 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 782, 1059, 1148, 1247 |
| BstNI | CCWGG | 1 cut(s) | 1199 |
| BstNSI | RCATGY | 2 cut(s) | 531, 989 |
| BstSCI | CCNGG | 4 cut(s) | 92, 93, 1197, 1471 |
| BstSNI | TACGTA | 2 cut(s) | 1592, 1817 |
| BstUI | CGCG | 1 cut(s) | 1352 |
| BstV1I | GCAGC | 2 cut(s) | 924, 927 |
| BstX2I | RGATCY | 5 cut(s) | 273, 434, 1317, 1489, 1520 |
| BstYI | RGATCY | 5 cut(s) | 273, 434, 1317, 1489, 1520 |
| Bsu15I | ATCGAT | 1 cut(s) | 1797 |
| BsuI | GTATCC | 3 cut(s) | 18, 205, 492 |
| BsuRI | GGCC | 8 cut(s) | 301, 553, 1018, 1028, 1088, 1162, 1357, 1644 |
| BsuTUI | ATCGAT | 1 cut(s) | 1797 |
| BtgZI | GCGATG | 2 cut(s) | 1171, 1643 |
| BtsCI | GGATG | 3 cut(s) | 483, 680, 1603 |
| BtsIMutI | CAGTG | 1 cut(s) | 566 |
| BveI | ACCTGC | 2 cut(s) | 111, 1280 |
| Cac8I | GCNNGC | 1 cut(s) | 987 |
| CfoI | GCGC | 1 cut(s) | 1352 |
| Cfr10I | RCCGGY | 1 cut(s) | 1237 |
| Cfr13I | GGNCC | 3 cut(s) | 299, 1363, 1642 |
| Cfr9I | CCCGGG | 1 cut(s) | 93 |
| ClaI | ATCGAT | 1 cut(s) | 1797 |
| CseI | GACGC | 1 cut(s) | 1059 |
| Csp6I | GTAC | 6 cut(s) | 473, 525, 901, 1637, 1689, 1814 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1018, 1053 |
| CviAII | CATG | 4 cut(s) | 528, 718, 986, 1285 |
| CviQI | GTAC | 6 cut(s) | 473, 525, 901, 1637, 1689, 1814 |
| DdeI | CTNAG | 2 cut(s) | 184, 431 |
| EaeI | YGGCCR | 2 cut(s) | 1160, 1355 |
| Eam1104I | CTCTTC | 1 cut(s) | 48 |
| EarI | CTCTTC | 1 cut(s) | 48 |
| EciI | GGCGGA | 2 cut(s) | 674, 1531 |
| Eco105I | TACGTA | 2 cut(s) | 1592, 1817 |
| Eco130I | CCWWGG | 2 cut(s) | 156, 1013 |
| Eco147I | AGGCCT | 1 cut(s) | 553 |
| Eco32I | GATATC | 1 cut(s) | 111 |
| Eco47I | GGWCC | 1 cut(s) | 1363 |
| Eco57I | CTGAAG | 1 cut(s) | 306 |
| Eco88I | CYCGRG | 1 cut(s) | 93 |
| EcoO109I | RGGNCCY | 1 cut(s) | 299 |
| EcoRII | CCWGG | 1 cut(s) | 1197 |
| EcoRV | GATATC | 1 cut(s) | 111 |
| EcoT14I | CCWWGG | 2 cut(s) | 156, 1013 |
| ErhI | CCWWGG | 2 cut(s) | 156, 1013 |
| Esp3I | CGTCTC | 1 cut(s) | 1826 |
| FaeI | CATG | 4 cut(s) | 531, 721, 989, 1288 |
| FaqI | GGGAC | 2 cut(s) | 49, 110 |
| FatI | CATG | 4 cut(s) | 527, 717, 985, 1284 |
| FblI | GTMKAC | 1 cut(s) | 136 |
| Fnu4HI | GCNGC | 4 cut(s) | 913, 916, 1348, 1845 |
| FokI | GGATG | 3 cut(s) | 490, 687, 1610 |
| Fsp4HI | GCNGC | 4 cut(s) | 913, 916, 1348, 1845 |
| FspBI | CTAG | 3 cut(s) | 8, 317, 779 |
| GlaI | GCGC | 1 cut(s) | 1351 |
| GluI | GCNGC | 4 cut(s) | 913, 916, 1348, 1845 |
| GsaI | CCCAGC | 1 cut(s) | 975 |
| HaeIII | GGCC | 8 cut(s) | 301, 553, 1018, 1028, 1088, 1162, 1357, 1644 |
| HapII | CCGG | 5 cut(s) | 94, 1238, 1331, 1472, 1579 |
| HgaI | GACGC | 1 cut(s) | 1059 |
| HhaI | GCGC | 1 cut(s) | 1352 |
| Hin1I | GRCGYC | 1 cut(s) | 1051 |
| Hin1II | CATG | 4 cut(s) | 531, 721, 989, 1288 |
| Hin6I | GCGC | 1 cut(s) | 1350 |
| HinP1I | GCGC | 1 cut(s) | 1350 |
| HincII | GTYRAC | 2 cut(s) | 805, 1099 |
| HindII | GTYRAC | 2 cut(s) | 805, 1099 |
| HindIII | AAGCTT | 1 cut(s) | 1222 |
| HinfI | GANTC | 7 cut(s) | 161, 326, 578, 1021, 1208, 1430, 1560 |
| HpaI | GTTAAC | 2 cut(s) | 805, 1099 |
| HpaII | CCGG | 5 cut(s) | 94, 1238, 1331, 1472, 1579 |
| HphI | GGTGA | 5 cut(s) | 38, 108, 520, 1185, 1448 |
| Hpy166II | GTNNAC | 8 cut(s) | 137, 401, 705, 805, 1099, 1271, 1689, 1691 |
| Hpy8I | GTNNAC | 8 cut(s) | 137, 401, 705, 805, 1099, 1271, 1689, 1691 |
| Hpy99I | CGWCG | 1 cut(s) | 1053 |
| HpyAV | CCTTC | 4 cut(s) | 14, 497, 928, 1662 |
| HpyCH4III | ACNGT | 5 cut(s) | 869, 1103, 1367, 1446, 1529 |
| HpyCH4IV | ACGT | 7 cut(s) | 726, 1244, 1410, 1591, 1722, 1816, 1835 |
| HpyCH4V | TGCA | 3 cut(s) | 985, 1570, 1844 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 782, 1059, 1148, 1247 |
| HpyF3I | CTNAG | 2 cut(s) | 184, 431 |
| HpySE526I | ACGT | 7 cut(s) | 726, 1244, 1410, 1591, 1722, 1816, 1835 |
| Hsp92I | GRCGYC | 1 cut(s) | 1051 |
| Hsp92II | CATG | 4 cut(s) | 531, 721, 989, 1288 |
| HspAI | GCGC | 1 cut(s) | 1350 |
| Kpn2I | TCCGGA | 1 cut(s) | 1578 |
| KspAI | GTTAAC | 2 cut(s) | 805, 1099 |
| LmnI | GCTCC | 2 cut(s) | 245, 661 |
| Lsp1109I | GCAGC | 2 cut(s) | 924, 927 |
| LweI | GCATC | 4 cut(s) | 1102, 1155, 1557, 1831 |
| MaeI | CTAG | 3 cut(s) | 8, 317, 779 |
| MaeII | ACGT | 7 cut(s) | 726, 1244, 1410, 1591, 1722, 1816, 1835 |
| MaeIII | GTNAC | 3 cut(s) | 874, 1454, 1620 |
| MboII | GAAGA | 8 cut(s) | 35, 105, 355, 973, 1255, 1312, 1484, 1567 |
| MfeI | CAATTG | 1 cut(s) | 1510 |
| MflI | RGATCY | 5 cut(s) | 273, 434, 1317, 1489, 1520 |
| MlsI | TGGCCA | 1 cut(s) | 1357 |
| MluNI | TGGCCA | 1 cut(s) | 1357 |
| MmeI | TCCRAC | 6 cut(s) | 147, 1367, 1428, 1465, 1511, 1548 |
| MnlI | CCTC | 8 cut(s) | 288, 373, 546, 619, 693, 775, 1354, 1760 |
| Mox20I | TGGCCA | 1 cut(s) | 1357 |
| MroI | TCCGGA | 1 cut(s) | 1578 |
| MscI | TGGCCA | 1 cut(s) | 1357 |
| Msp20I | TGGCCA | 1 cut(s) | 1357 |
| MspI | CCGG | 5 cut(s) | 94, 1238, 1331, 1472, 1579 |
| MspR9I | CCNGG | 4 cut(s) | 94, 95, 1199, 1473 |
| MunI | CAATTG | 1 cut(s) | 1510 |
| Mva1269I | GAATGC | 2 cut(s) | 1482, 1763 |
| MvaI | CCWGG | 1 cut(s) | 1199 |
| MvnI | CGCG | 1 cut(s) | 1352 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 782, 1059, 1148, 1247 |
| NciI | CCSGG | 3 cut(s) | 94, 95, 1473 |
| NlaIII | CATG | 4 cut(s) | 531, 721, 989, 1288 |
| NlaIV | GGNNCC | 4 cut(s) | 300, 663, 1232, 1391 |
| NmeAIII | GCCGAG | 2 cut(s) | 450, 690 |
| NmuCI | GTSAC | 2 cut(s) | 1454, 1620 |
| NspI | RCATGY | 2 cut(s) | 531, 989 |
| PaeI | GCATGC | 1 cut(s) | 989 |
| PceI | AGGCCT | 1 cut(s) | 553 |
| PciI | ACATGT | 1 cut(s) | 527 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 422, 662, 1107 |
| PctI | GAATGC | 2 cut(s) | 1482, 1763 |
| PfeI | GAWTC | 7 cut(s) | 161, 326, 578, 1021, 1208, 1430, 1560 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1175 |
| PkrI | GCNGC | 4 cut(s) | 914, 917, 1349, 1846 |
| Ppu21I | YACGTR | 3 cut(s) | 1245, 1592, 1817 |
| PscI | ACATGT | 1 cut(s) | 527 |
| PsiI | TTATAA | 2 cut(s) | 864, 1728 |
| Psp1406I | AACGTT | 1 cut(s) | 1722 |
| Psp6I | CCWGG | 1 cut(s) | 1197 |
| PspFI | CCCAGC | 1 cut(s) | 971 |
| PspGI | CCWGG | 1 cut(s) | 1197 |
| PspN4I | GGNNCC | 4 cut(s) | 300, 663, 1232, 1391 |
| PspPI | GGNCC | 3 cut(s) | 299, 1363, 1642 |
| PsuI | RGATCY | 5 cut(s) | 273, 434, 1317, 1489, 1520 |
| RsaI | GTAC | 6 cut(s) | 474, 526, 902, 1638, 1690, 1815 |
| RsaNI | GTAC | 6 cut(s) | 473, 525, 901, 1637, 1689, 1814 |
| SatI | GCNGC | 4 cut(s) | 913, 916, 1348, 1845 |
| Sau96I | GGNCC | 3 cut(s) | 299, 1363, 1642 |
| ScaI | AGTACT | 1 cut(s) | 1638 |
| ScrFI | CCNGG | 4 cut(s) | 94, 95, 1199, 1473 |
| SfaNI | GCATC | 4 cut(s) | 1102, 1155, 1557, 1831 |
| SinI | GGWCC | 1 cut(s) | 1363 |
| SmaI | CCCGGG | 1 cut(s) | 95 |
| SnaBI | TACGTA | 2 cut(s) | 1592, 1817 |
| SphI | GCATGC | 1 cut(s) | 989 |
| SseBI | AGGCCT | 1 cut(s) | 553 |
| SsiI | CCGC | 4 cut(s) | 659, 1060, 1347, 1516 |
| SspI | AATATT | 1 cut(s) | 1738 |
| SspMI | CTAG | 3 cut(s) | 8, 317, 779 |
| StuI | AGGCCT | 1 cut(s) | 553 |
| StyD4I | CCNGG | 4 cut(s) | 92, 93, 1197, 1471 |
| StyI | CCWWGG | 2 cut(s) | 156, 1013 |
| TaaI | ACNGT | 5 cut(s) | 869, 1103, 1367, 1446, 1529 |
| TaiI | ACGT | 7 cut(s) | 729, 1247, 1413, 1594, 1725, 1819, 1838 |
| TaqI | TCGA | 6 cut(s) | 283, 491, 1048, 1211, 1433, 1797 |
| TatI | WGTACW | 3 cut(s) | 524, 1636, 1688 |
| TauI | GCSGC | 1 cut(s) | 1350 |
| TfiI | GAWTC | 7 cut(s) | 161, 326, 578, 1021, 1208, 1430, 1560 |
| TscAI | CASTG | 1 cut(s) | 573 |
| TseFI | GTSAC | 2 cut(s) | 1454, 1620 |
| TseI | GCWGC | 3 cut(s) | 912, 915, 1844 |
| Tsp45I | GTSAC | 2 cut(s) | 1454, 1620 |
| TspDTI | ATGAA | 4 cut(s) | 1273, 1312, 1443, 1731 |
| TspGWI | ACGGA | 5 cut(s) | 77, 490, 513, 1256, 1565 |
| TspMI | CCCGGG | 1 cut(s) | 93 |
| TspRI | CASTG | 1 cut(s) | 573 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1175 |
| VpaK11BI | GGWCC | 1 cut(s) | 1363 |
| XapI | RAATTY | 3 cut(s) | 1041, 1396, 1504 |
| XceI | RCATGY | 2 cut(s) | 531, 989 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 163, 1242 |
| XmaI | CCCGGG | 1 cut(s) | 93 |
| XmiI | GTMKAC | 1 cut(s) | 136 |
| XspI | CTAG | 3 cut(s) | 8, 317, 779 |
| ZrmI | AGTACT | 1 cut(s) | 1638 |