pycom13g06880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014830
Physical Location & Seq
Forward (+)
4553381 .. 4553885
505 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g06880.1

Sequence Viewer

Length: 411 bp
ATGGACAGTGAAGCTTGCAGCCAATCAAAAAGAAAAGAAGGAAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAAGGGAAGAAAGCTTCCCGTGCACCCATACCCGCACCACCACGAGACCATCTTCCAAGGCCGATTCCGGCCAACTCCGGTGGAGTTTTTGGATGCCACCACCACCATCTTGAAGCTCTCATTCCTCTCTACAAAACCCACCCAAGAACCACCTTGATTAACCATGGTATGGGGCAGTTTGAGGCCACGAAAGTTGACGAAAATCAATGGTGCTCCGGCCACCCTTTTCGATTTTCCGGCAAATTGGCAAAGCAATGGCCGATGCCACCACTTGGGCTTTGTAGCCCATCATTCCAGGAGCAAAATCCAACCAACCTTGACCCCGTTGGACCACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.17

Weight (kDa)

9.94

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 241, 344
AciI CCGC 1 cut(s) 105
AcoI YGGCCR 3 cut(s) 141, 289, 329
AfiI CCNNNNNNNGG 2 cut(s) 241, 344
AgsI TTSAA 1 cut(s) 185
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 3 cut(s) 14, 86, 188
AluI AGCT 3 cut(s) 14, 86, 188
Alw21I GWGCWC 2 cut(s) 97, 287
Alw26I GTCTC 1 cut(s) 111
Alw44I GTGCAC 1 cut(s) 93
AoxI GGCC 5 cut(s) 131, 141, 255, 289, 329
ApaLI GTGCAC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 401
AvaII GGWCC 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 97
BauI CACGAG 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 97, 287
BbvI GCAGC 1 cut(s) 30
BccI CCATC 3 cut(s) 129, 186, 367
BciT130I CCWGG 1 cut(s) 368
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 1 cut(s) 368
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 155, 324
BsaI GGTCTC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 128, 235
BsaWI WCCGGW 1 cut(s) 149
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 344
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 128, 235
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 241, 344
BseMI GCAATG 1 cut(s) 332
BseSI GKGCMC 1 cut(s) 97
BseXI GCAGC 1 cut(s) 30
BshFI GGCC 5 cut(s) 133, 143, 257, 291, 331
BsiHKAI GWGCWC 2 cut(s) 97, 287
BsiSI CCGG 4 cut(s) 140, 150, 288, 309
BslI CCNNNNNNNGG 2 cut(s) 241, 344
BsmAI GTCTC 1 cut(s) 111
BsnI GGCC 5 cut(s) 133, 143, 257, 291, 331
Bso31I GGTCTC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 97, 287
Bsp19I CCATGG 1 cut(s) 235
BspACI CCGC 1 cut(s) 105
BspANI GGCC 5 cut(s) 133, 143, 257, 291, 331
BspTNI GGTCTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 128, 235
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 2 cut(s) 128, 235
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 8, 408
BstC8I GCNNGC 1 cut(s) 16
BstDSI CCRYGG 1 cut(s) 235
BstF5I GGATG 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 1 cut(s) 366
BstSLI GKGCMC 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 30
BsuRI GGCC 5 cut(s) 133, 143, 257, 291, 331
BtgI CCRYGG 1 cut(s) 235
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 401
CspCI CAANNNNNGTGG 4 cut(s) 133, 168, 247, 282
CviAII CATG 1 cut(s) 236
EaeI YGGCCR 3 cut(s) 141, 289, 329
Eco130I CCWWGG 2 cut(s) 128, 235
Eco31I GGTCTC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 366
EcoT14I CCWWGG 2 cut(s) 128, 235
ErhI CCWWGG 2 cut(s) 128, 235
FaeI CATG 1 cut(s) 239
FaiI YATR 3 cut(s) 101, 237, 242
FatI CATG 1 cut(s) 235
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
HaeIII GGCC 5 cut(s) 133, 143, 257, 291, 331
HapII CCGG 4 cut(s) 140, 150, 288, 309
Hin1II CATG 1 cut(s) 239
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 12, 84
HinfI GANTC 1 cut(s) 136
HpaII CCGG 4 cut(s) 140, 150, 288, 309
Hpy166II GTNNAC 2 cut(s) 95, 268
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 2 cut(s) 95, 268
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 2 cut(s) 8, 408
HpyCH4V TGCA 2 cut(s) 18, 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
Hsp92II CATG 1 cut(s) 239
LmnI GCTCC 2 cut(s) 290, 370
LpnPI CCDG 6 cut(s) 153, 163, 301, 322, 353, 380
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 2 cut(s) 155, 324
MboII GAAGA 2 cut(s) 91, 116
MhlI GDGCHC 2 cut(s) 97, 287
MluCI AATT 1 cut(s) 314
MmeI TCCRAC 2 cut(s) 379, 404
MnlI CCTC 2 cut(s) 207, 247
MseI TTAA 1 cut(s) 231
MspI CCGG 4 cut(s) 140, 150, 288, 309
MspR9I CCNGG 1 cut(s) 368
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 235
NlaIII CATG 1 cut(s) 239
PfeI GAWTC 1 cut(s) 136
PflMI CCANNNNNTGG 2 cut(s) 241, 344
PfoI TCCNGGA 1 cut(s) 366
PkrI GCNGC 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 401
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 2 cut(s) 97, 287
SetI ASST 5 cut(s) 16, 88, 190, 227, 390
SfaNI GCATC 2 cut(s) 155, 324
SinI GGWCC 1 cut(s) 401
Sse9I AATT 1 cut(s) 314
SsiI CCGC 1 cut(s) 105
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 2 cut(s) 128, 235
TaaI ACNGT 2 cut(s) 8, 408
TaqI TCGA 1 cut(s) 301
TasI AATT 1 cut(s) 314
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 18
TspRI CASTG 1 cut(s) 13
Van91I CCANNNNNTGG 2 cut(s) 241, 344
VneI GTGCAC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.