pycom17g16020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014830
Physical Location & Seq
Forward (+)
14299385 .. 14305995
6611 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16020.7

Sequence Viewer

Length: 429 bp
ATGTTGATGTTGGTTAGTAGTACTGAGTATGATTGTGATGTAGAAAATTTATGTGGAAAAAAAAAAAAAGGGAAGAGAGCTTCCAGTGCACCCATACCCGCACCACCGCGAGTCCATCTTCCAAGGCCGATTCCGGCCAACTCCGGTGGAGTTTTTCGATGCCACCACAACCATCTTGAAGCTCTCATTCCCCTCTACAAAACCCACCCAAGAACCACCTTGATTAACCATGGTATGGGGCGGTTTGAGGCCACGAAAGTTGACGAAAATCAATGGTGCTCCGGCCACCCTTTTCGATTTTCCGGCAAATCGGCAAAGCAATGGCCGATGCCACCACTTGGGCTTTGTAGCCCATCATCCCAGGAGAAACACCCAACCAACCTTGACACCGTTGGACCACCAGCTCATAAACCTGCACCCCGGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.66

Weight (kDa)

9.54

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 421
AccB7I CCANNNNNTGG 2 cut(s) 235, 338
AccII CGCG 1 cut(s) 109
AciI CCGC 3 cut(s) 99, 107, 241
AcoI YGGCCR 3 cut(s) 135, 283, 323
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 235, 338
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 360
AleI CACNNNNGTG 1 cut(s) 421
AluBI AGCT 3 cut(s) 80, 182, 404
AluI AGCT 3 cut(s) 80, 182, 404
Alw21I GWGCWC 2 cut(s) 91, 281
Alw44I GTGCAC 1 cut(s) 87
AoxI GGCC 5 cut(s) 125, 135, 249, 283, 323
ApaLI GTGCAC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 91
Bbv12I GWGCWC 2 cut(s) 91, 281
BccI CCATC 3 cut(s) 123, 180, 361
BciT130I CCWGG 1 cut(s) 362
BcnI CCSGG 1 cut(s) 421
BfuAI ACCTGC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 2 cut(s) 362, 421
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmrFI CCNGG 2 cut(s) 362, 421
BmsI GCATC 2 cut(s) 149, 318
BpuMI CCSGG 1 cut(s) 421
BsaJI CCNNGG 4 cut(s) 122, 229, 360, 419
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 338
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 326
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 4 cut(s) 122, 229, 360, 419
BseGI GGATG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 235, 338
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 5 cut(s) 127, 137, 251, 285, 325
BsiHKAI GWGCWC 2 cut(s) 91, 281
BsiSI CCGG 5 cut(s) 134, 144, 282, 303, 421
BslI CCNNNNNNNGG 2 cut(s) 235, 338
BsnI GGCC 5 cut(s) 127, 137, 251, 285, 325
Bsp1286I GDGCHC 2 cut(s) 91, 281
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 3 cut(s) 99, 107, 241
BspANI GGCC 5 cut(s) 127, 137, 251, 285, 325
BspCNI CTCAG 1 cut(s) 16
BspFNI CGCG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 4 cut(s) 122, 229, 360, 419
BssT1I CCWWGG 2 cut(s) 122, 229
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 1 cut(s) 356
BstFNI CGCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 360, 419
BstSLI GKGCMC 1 cut(s) 91
BstUI CGCG 1 cut(s) 109
BsuRI GGCC 5 cut(s) 127, 137, 251, 285, 325
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 91
BveI ACCTGC 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 1 cut(s) 21
CspCI CAANNNNNGTGG 4 cut(s) 127, 162, 241, 276
CviAII CATG 1 cut(s) 230
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 1 cut(s) 24
EaeI YGGCCR 3 cut(s) 135, 283, 323
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Eco130I CCWWGG 2 cut(s) 122, 229
Eco47I GGWCC 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 122, 229
ErhI CCWWGG 2 cut(s) 122, 229
FaeI CATG 1 cut(s) 233
FaiI YATR 6 cut(s) 30, 52, 95, 231, 236, 408
FatI CATG 1 cut(s) 229
FauI CCCGC 1 cut(s) 106
FokI GGATG 1 cut(s) 343
HaeIII GGCC 5 cut(s) 127, 137, 251, 285, 325
HapII CCGG 5 cut(s) 134, 144, 282, 303, 421
Hin1II CATG 1 cut(s) 233
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 111, 130
HpaII CCGG 5 cut(s) 134, 144, 282, 303, 421
Hpy166II GTNNAC 2 cut(s) 89, 262
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 2 cut(s) 89, 262
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 2 cut(s) 89, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 1 cut(s) 233
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 8 cut(s) 97, 147, 157, 295, 316, 347, 374, 414
LweI GCATC 2 cut(s) 149, 318
MboII GAAGA 2 cut(s) 85, 110
MhlI GDGCHC 2 cut(s) 91, 281
MluCI AATT 1 cut(s) 46
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 2 cut(s) 203, 241
MseI TTAA 1 cut(s) 225
MslI CAYNNNNRTG 1 cut(s) 421
MspI CCGG 5 cut(s) 134, 144, 282, 303, 421
MspR9I CCNGG 2 cut(s) 362, 421
MvaI CCWGG 1 cut(s) 362
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 86
NciI CCSGG 1 cut(s) 421
NcoI CCATGG 1 cut(s) 229
NlaIII CATG 1 cut(s) 233
OliI CACNNNNGTG 1 cut(s) 421
PfeI GAWTC 1 cut(s) 130
PflMI CCANNNNNTGG 2 cut(s) 235, 338
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
PspPI GGNCC 1 cut(s) 395
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
RseI CAYNNNNRTG 1 cut(s) 421
SaqAI TTAA 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 395
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 2 cut(s) 362, 421
SduI GDGCHC 2 cut(s) 91, 281
SetI ASST 6 cut(s) 82, 184, 221, 384, 406, 415
SfaNI GCATC 2 cut(s) 149, 318
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 421
Sse9I AATT 1 cut(s) 46
SsiI CCGC 3 cut(s) 99, 107, 241
StyD4I CCNGG 2 cut(s) 360, 419
StyI CCWWGG 2 cut(s) 122, 229
TaaI ACNGT 1 cut(s) 391
TaqI TCGA 2 cut(s) 157, 295
TasI AATT 1 cut(s) 46
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 91
TspRI CASTG 1 cut(s) 91
Van91I CCANNNNNTGG 2 cut(s) 235, 338
VneI GTGCAC 1 cut(s) 87
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 1 cut(s) 46
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.