Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007255

Physical Location & Seq

Genomic Coordinates Forward (+)

25907505 .. 25908695

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGATGGAGACGCTACCACGTGGACCTCAAACACCTCCGGCGCTGGTGTTGAAGGAGCAACGTTGCAAGAATCCGGAAATTTCATTATCCACGACAACGTCAACCGCCCTGTGTGGCAGAGTTTCTCACACCCATCTGACACTCTCCTCCCAAACCAACCTCTTTCAGTCTCTTTAGAGCTAACAACTTCTAAGTCCCCCTCACATGGTGGATACTATGCACTCAAAATGCTTCAACAACGCACTTCTTTAAGCCTTGCCTTGACTTACAACATGCCGGAAACTTTATACAATTCCTCCCCTGAATCATATTATAACTATTCTTATTGGAACGGACCCGACATATCAAATGTAACCGGGGATGTTGTAGCGGTTTTAGATGAAGCAGGGAGCTTTGGAATTGTGTATGGGGAGTCATCAGATGGAGCTGTATACGTGTACAAGAACGATGGCGATGATGGGGGACTATCAGCGGCATCAAACATATCAACCAGATCATTGGTTCTTCAAAGATTGATACTCGAGAGTAATGGGAATTTACGCTTGTATCGTTGGGATAATGATGTTAATGGCTCAAGGCAATGGGTTCCAGAGTGGGCTGCAGTTTCAACACCATGTGACATTGCTGGAATTTGTGGTAAAGGGATATGTAACTTGGATAGGAGTAAAACTAATGCTTCTTGCACATGTCTACCGGGGACTTACAAGGAAAATGGGGGAAGTCTTTGTTCAGAGAATTCATCACTTGCAGGAAAATGTGATTCGCGGAGTAATTATCAGCCATCCCAGTTCAGAATTTCAACTGTGCAGCAAACCAATTACTATTTTCCAGAATTTTCAGTCATAGCAAACTACAGCGATGTTGAGAATGTAACAAAATGTGGAGATATTTGTCTAGCTGATTGTGAATGTGTTGCTTCAGTTTACGGCCTTGATGACGAAAATCCATACTGTTGGGTTTTGAGAAGCATGGATTTTGGTGGCTATGAGGATCCTGGTTCAACTCTGTTTGTGAAGGTTTGGTCTAATGGCTTAGAGGGCAATGCAAAAGGATCCGGGGAGTCTTCCAAGGGGTCGGGTAATCGGCAAACAAAAGTTTTGGTTATTCCTATTGTTCTTAGCATGATCTTCCTTGTTGCCCTCCTATGTCTTTTGCTATATTACAATGTGCATACGAAGATCGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

397

Amino Acids

43.03

Weight (kDa)

4.58

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	5 - 60	3.6e-09	D-mannose binding lectin
S_locus_glycop	PF00954	158 - 234	3.1e-09	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24080 AT5G24080 AT5G24080
fragaria_vesca	FvH4_7g30670 FvH4_7g30670
malus_domestica	MD01G1211900.v1.1 MD07G1282400.v1.1
prunus_persica	Prupe.2G304500_v2.0.a1 Prupe.2G304500_v2.0.a1
pyrus_communis	pycom01g22230 pycom07g25630 pycom07g25640
rosa_chinensis	RchiOBHm_Chr1g0379601
rosa_laevigata	RLG00000026391
rosa_multiflora	Rmu_co8451749.1_g000001 Rmu_sc0011286.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280050
rosa_rugosa	Rorug01G0413200 Rorug01G0413300 Rorug01G0413400
rosa_samantha	Rh1AG436400 Rh1BG393400 Rh1CG406200 Rh1DG424300
rosa_wichuraiana	Rw1G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AccI	GTMKAC	2 cut(s)	432, 691
AccII	CGCG	1 cut(s)	766
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	4 cut(s)	106, 371, 473, 766
AclI	AACGTT	1 cut(s)	62
AclWI	GGATC	5 cut(s)	986, 999, 1047, 1060, 1178
AcsI	RAATTY	6 cut(s)	79, 535, 630, 736, 795, 833
AcuI	CTGAAG	1 cut(s)	903
AcvI	CACGTG	1 cut(s)	21
AdeI	CACNNNGTG	2 cut(s)	209, 617
AfaI	GTAC	1 cut(s)	440
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	2 cut(s)	435, 686
AgsI	TTSAA	6 cut(s)	53, 236, 509, 609, 801, 1002
AjnI	CCWGG	1 cut(s)	994
AluBI	AGCT	4 cut(s)	181, 393, 428, 899
AluI	AGCT	4 cut(s)	181, 393, 428, 899
Alw26I	GTCTC	2 cut(s)	3, 175
AlwI	GGATC	5 cut(s)	986, 999, 1047, 1060, 1178
Ama87I	CYCGRG	1 cut(s)	521
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	1 cut(s)	928
ApeKI	GCWGC	2 cut(s)	599, 808
ApoI	RAATTY	6 cut(s)	79, 535, 630, 736, 795, 833
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	24, 335
AsuC2I	CCSGG	3 cut(s)	358, 696, 1057
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	2 cut(s)	24, 335
BaeI	ACNNNNGTAYC	2 cut(s)	530, 563
BamHI	GGATCC	2 cut(s)	991, 1052
BbrPI	CACGTG	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	1056
BbvI	GCAGC	2 cut(s)	586, 820
BccI	CCATC	5 cut(s)	142, 416, 443, 452, 790
BceAI	ACGGC	1 cut(s)	943
BciT130I	CCWGG	1 cut(s)	996
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	3 cut(s)	358, 696, 1057
BcoDI	GTCTC	2 cut(s)	3, 175
BfaI	CTAG	1 cut(s)	896
BfmI	CTRYAG	2 cut(s)	600, 853
BfoI	RGCGCY	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	474, 600, 809
BlsI	GCNGC	3 cut(s)	475, 601, 810
Bme1390I	CCNGG	4 cut(s)	358, 696, 996, 1057
Bme18I	GGWCC	2 cut(s)	24, 335
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	24, 335
BmiI	GGNNCC	4 cut(s)	337, 588, 993, 1054
BmrFI	CCNGG	4 cut(s)	358, 696, 996, 1057
BmrI	ACTGGG	1 cut(s)	781
BmsI	GCATC	1 cut(s)	485
BmuI	ACTGGG	1 cut(s)	781
BpiI	GAAGAC	1 cut(s)	1056
BpuEI	CTTGAG	1 cut(s)	559
BpuMI	CCSGG	3 cut(s)	358, 696, 1057
Bsa29I	ATCGAT	1 cut(s)	1182
BsaAI	YACGTR	2 cut(s)	21, 436
BsaJI	CCNNGG	4 cut(s)	357, 695, 1056, 1068
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	787
Bse3DI	GCAATG	3 cut(s)	587, 621, 1048
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	996
BseCI	ATCGAT	1 cut(s)	1182
BseDI	CCNNGG	4 cut(s)	357, 695, 1056, 1068
BseGI	GGATG	3 cut(s)	10, 367, 782
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	3 cut(s)	587, 621, 1048
BseNI	ACTGG	1 cut(s)	787
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	586, 820
BsgI	GTGCAG	1 cut(s)	827
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	1 cut(s)	930
BshVI	ATCGAT	1 cut(s)	1182
BsiHKCI	CYCGRG	1 cut(s)	521
BsiSI	CCGG	6 cut(s)	39, 75, 278, 357, 695, 1056
BslFI	GGGAC	3 cut(s)	181, 477, 712
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	3, 175
BsmBI	CGTCTC	1 cut(s)	3
BsmFI	GGGAC	3 cut(s)	181, 477, 712
BsnI	GGCC	1 cut(s)	930
BsoBI	CYCGRG	1 cut(s)	521
Bsp13I	TCCGGA	1 cut(s)	74
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
BspACI	CCGC	4 cut(s)	106, 371, 473, 766
BspANI	GGCC	1 cut(s)	930
BspDI	ATCGAT	1 cut(s)	1182
BspEI	TCCGGA	1 cut(s)	74
BspFNI	CGCG	1 cut(s)	766
BspLI	GGNNCC	4 cut(s)	337, 588, 993, 1054
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	5 cut(s)	986, 999, 1047, 1060, 1178
BsrDI	GCAATG	3 cut(s)	587, 621, 1048
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	787
BssECI	CCNNGG	4 cut(s)	357, 695, 1056, 1068
BssMI	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
BssNAI	GTATAC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	1068
Bst1107I	GTATAC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	2 cut(s)	805, 953
BstAUI	TGTACA	1 cut(s)	438
BstBAI	YACGTR	2 cut(s)	21, 436
BstDEI	CTNAG	3 cut(s)	192, 1033, 1118
BstF5I	GGATG	3 cut(s)	10, 367, 782
BstFNI	CGCG	1 cut(s)	766
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	6 cut(s)	497, 994, 1055, 1128, 1182, 1186
BstMAI	GTCTC	2 cut(s)	3, 175
BstMBI	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
BstMWI	GCNNNNNNNGC	1 cut(s)	1038
BstNI	CCWGG	1 cut(s)	996
BstNSI	RCATGY	2 cut(s)	277, 690
BstSCI	CCNGG	4 cut(s)	356, 694, 994, 1055
BstSFI	CTRYAG	2 cut(s)	600, 853
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	2 cut(s)	586, 820
BstV2I	GAAGAC	1 cut(s)	1056
BstX2I	RGATCY	2 cut(s)	991, 1052
BstXI	CCANNNNNNTGG	2 cut(s)	499, 954
BstYI	RGATCY	2 cut(s)	991, 1052
BstZ17I	GTATAC	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	1182
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	930
BsuTUI	ATCGAT	1 cut(s)	1182
BtgZI	GCGATG	2 cut(s)	468, 873
BtsCI	GGATG	3 cut(s)	10, 367, 782
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	24, 335
ClaI	ATCGAT	1 cut(s)	1182
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	439
CviAII	CATG	6 cut(s)	206, 274, 615, 687, 970, 1123
CviQI	GTAC	1 cut(s)	439
DdeI	CTNAG	3 cut(s)	192, 1033, 1118
DpnI	GATC	6 cut(s)	496, 993, 1054, 1127, 1181, 1185
DpnII	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
DraIII	CACNNNGTG	2 cut(s)	209, 617
Eco130I	CCWWGG	1 cut(s)	1068
Eco47I	GGWCC	2 cut(s)	24, 335
Eco57I	CTGAAG	1 cut(s)	903
Eco72I	CACGTG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	994
EcoT14I	CCWWGG	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	1068
Esp3I	CGTCTC	1 cut(s)	3
FaeI	CATG	6 cut(s)	209, 277, 618, 690, 973, 1126
FaqI	GGGAC	3 cut(s)	181, 477, 712
FatI	CATG	6 cut(s)	205, 273, 614, 686, 969, 1122
FblI	GTMKAC	2 cut(s)	432, 691
Fnu4HI	GCNGC	3 cut(s)	474, 600, 809
FokI	GGATG	3 cut(s)	17, 374, 769
Fsp4HI	GCNGC	3 cut(s)	474, 600, 809
FspBI	CTAG	1 cut(s)	896
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	474, 600, 809
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	930
HapII	CCGG	6 cut(s)	39, 75, 278, 357, 695, 1056
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	209, 277, 618, 690, 973, 1126
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HinfI	GANTC	5 cut(s)	71, 305, 413, 761, 1061
HpaII	CCGG	6 cut(s)	39, 75, 278, 357, 695, 1056
Hpy166II	GTNNAC	6 cut(s)	24, 103, 433, 439, 692, 925
Hpy188I	TCNGA	4 cut(s)	139, 421, 733, 794
Hpy188III	TCNNGA	4 cut(s)	75, 523, 590, 830
Hpy8I	GTNNAC	6 cut(s)	24, 103, 433, 439, 692, 925
HpyAV	CCTTC	2 cut(s)	47, 1009
HpyCH4III	ACNGT	2 cut(s)	805, 953
HpyCH4IV	ACGT	4 cut(s)	20, 62, 99, 435
HpyCH4V	TGCA	8 cut(s)	67, 221, 602, 684, 749, 808, 1046, 1171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1038
HpyF3I	CTNAG	3 cut(s)	192, 1033, 1118
HpySE526I	ACGT	4 cut(s)	20, 62, 99, 435
Hsp92II	CATG	6 cut(s)	209, 277, 618, 690, 973, 1126
HspAI	GCGC	1 cut(s)	42
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
LmnI	GCTCC	3 cut(s)	56, 390, 425
Lsp1109I	GCAGC	2 cut(s)	586, 820
LweI	GCATC	1 cut(s)	485
MaeI	CTAG	1 cut(s)	896
MaeII	ACGT	4 cut(s)	20, 62, 99, 435
MaeIII	GTNAC	4 cut(s)	352, 617, 650, 871
MalI	GATC	6 cut(s)	496, 993, 1054, 1127, 1181, 1185
MboI	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
MboII	GAAGA	4 cut(s)	497, 1056, 1120, 1189
MflI	RGATCY	2 cut(s)	991, 1052
MlyI	GAGTC	2 cut(s)	422, 1070
MnlI	CCTC	9 cut(s)	37, 46, 158, 171, 211, 307, 982, 1030, 1151
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	2 cut(s)	251, 567
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	6 cut(s)	39, 75, 278, 357, 695, 1056
MspR9I	CCNGG	4 cut(s)	358, 696, 996, 1057
MvaI	CCWGG	1 cut(s)	996
MvnI	CGCG	1 cut(s)	766
MwoI	GCNNNNNNNGC	1 cut(s)	1038
NciI	CCSGG	3 cut(s)	358, 696, 1057
NdeII	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
NlaIII	CATG	6 cut(s)	209, 277, 618, 690, 973, 1126
NlaIV	GGNNCC	4 cut(s)	337, 588, 993, 1054
NmuCI	GTSAC	1 cut(s)	617
NspI	RCATGY	2 cut(s)	277, 690
PaeR7I	CTCGAG	1 cut(s)	521
PciI	ACATGT	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	1 cut(s)	547
PfeI	GAWTC	3 cut(s)	71, 305, 761
PflFI	GACNNNGTC	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	475, 601, 810
PleI	GAGTC	2 cut(s)	421, 1069
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
PpsI	GAGTC	2 cut(s)	421, 1069
Ppu21I	YACGTR	2 cut(s)	21, 436
PscI	ACATGT	1 cut(s)	686
PsiI	TTATAA	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	994
PspCI	CACGTG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	4 cut(s)	337, 588, 993, 1054
PspPI	GGNCC	2 cut(s)	24, 335
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	2 cut(s)	991, 1052
PsyI	GACNNNGTC	1 cut(s)	98
RsaI	GTAC	1 cut(s)	440
RsaNI	GTAC	1 cut(s)	439
SaqAI	TTAA	2 cut(s)	251, 567
SatI	GCNGC	3 cut(s)	474, 600, 809
Sau3AI	GATC	6 cut(s)	494, 991, 1052, 1125, 1179, 1183
Sau96I	GGNCC	2 cut(s)	24, 335
SchI	GAGTC	2 cut(s)	422, 1070
ScrFI	CCNGG	4 cut(s)	358, 696, 996, 1057
SfaNI	GCATC	1 cut(s)	485
SfcI	CTRYAG	2 cut(s)	600, 853
Sfr274I	CTCGAG	1 cut(s)	521
SinI	GGWCC	2 cut(s)	24, 335
SlaI	CTCGAG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	521, 574
SmoI	CTYRAG	2 cut(s)	521, 574
SsiI	CCGC	4 cut(s)	106, 371, 473, 766
SspMI	CTAG	1 cut(s)	896
StyD4I	CCNGG	4 cut(s)	356, 694, 994, 1055
StyI	CCWWGG	1 cut(s)	1068
TaaI	ACNGT	2 cut(s)	805, 953
TaiI	ACGT	4 cut(s)	23, 65, 102, 438
TaqI	TCGA	2 cut(s)	522, 1182
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	71, 305, 761
Tru1I	TTAA	2 cut(s)	251, 567
Tru9I	TTAA	2 cut(s)	251, 567
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	2 cut(s)	599, 808
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	3 cut(s)	73, 396, 729
TspGWI	ACGGA	1 cut(s)	348
Tth111I	GACNNNGTC	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	24, 335
XapI	RAATTY	6 cut(s)	79, 535, 630, 736, 795, 833
XceI	RCATGY	2 cut(s)	277, 690
XhoI	CTCGAG	1 cut(s)	521
XmiI	GTMKAC	2 cut(s)	432, 691
XspI	CTAG	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.