Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007255

Physical Location & Seq

Genomic Coordinates Reverse (-)

51791448 .. 51796910

Gene Structure 5463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0413400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGGCGAAACCGAGCAGCAATACTCGGACTTGGTTCTGGAGCCGAGGCGAGAAAGTGGAGGTGCGCACAGAAGAAGAAGGCTTCCACGGCGCGTGGTTCCCGGCGACGATCCTGGAGCCGCCGTCGAATCCTTCTTCGGTTCTCAGCAGGAAACGAAAGAGCTTCAACTCGAACAAGGTCTTGGTCCAGTACAACACCTTCGTCACGGAGAAGGACCCAACCAAGCCGCTGACGGAGTACACCAACGTCATGTTCCTCCGGCCGTCGCCGCCGGTGGAGGCTCCCGGGAAGACATTCGATGCCGGCGACGACGTGGACGCGTTTCACAACGACGCGTGGTGGCCGGGAGTGGTGATGAGTGTGGAAGGAGGGGACAGGTACAGGGTGGGGTTTAGGGACCCGCCGGAGTTGCTGGTGCTTGGCCGGAGTGAGTTGAGGAGTCACTTGGATTGGGTCAACGAGATTTGGTCCAGACCATACAAGAAGCGGATGAAGGAATCGATGTATAGTCCGGGGACTCCAATTGAAGTGAGACTTGTCAAAGAACATCTATGGTCTGCTTGGATTCCAGCAATTTATGCTGGTGCATTAGGGGGGAACTTGTTTTTGGTTCAATATAAGAGCCTAAAGAACAGTGATAAAGATGGGATTGCTACAGTGGCTGTATCTGACCATCAGATCCGACCTCGCCCTCCACGGCACAACGAAACAGGTTTTTGCTTGCTGGACATGGTGGATGCGTTCCATGATATGAGTTGGTGGGTTGGAAGTATTACAAATGTTCTTCCAGACAATAAGTACATTGTCACTTTTAAACTTACAGATGAACAGAAAGAATTCAGTCACTCAGAACTAAGGCTCCATATGGAATGGATTGACAAAAAATGGGAGTCTGACTTTTCGAGATTTGGGTCTGCGATGGATGATATAGAACAAACACAGCATACATTCACAAATTCCAGAAACTCTGCGGTAGCTACACCACTTAAAAGGTCACGTGCTACCAAGGATAGCACGGGAGAAGAAAATCCTTATGCTAGCTCACAGAAGAATCAGATGAAGCAGCTGGGTCCTTGCATTGATAAATCAGCTTATAGTAAAACCACAAATGAACTGAAACTACTGGACCAACCTAATGATGATGCAACATTTTTAAGTCCAACTCCTTCCAAGAAGTTAAAACGACATCCAGAAGAATCTGTTTCTATTGATGAAGTATATGTGAGGAGAAGACCAATTAAAATATCCAATGAAAAAGGCCCTGTTGGAGATGGTGTGAAGACTGGGTCGCTGCTTGGAGAACAAGGTAGACAAAGAAAATCACAATTTGATGGGAGCAGTCCACCACTGAAAATTCATGTTGCAGTCAAGAAGGGAAGTAGAATGGACAAGGCTGATGAAGAATGTATTGGCGATGAGCATGTAATGGACAAGTCTGAATCTTCTGGTATTCAGTCAGACTCTGAAGTAACGAGAAGATCACTTGCTGGAAATTCTAGTCTCCTGCATTTGAAGGAGATTAATCAACATGATGAAGATGGAGTGAGCAATCAGACAAAAGTGAAGGATATTGCTGAGGCTGGACTGCCCGGAAAGACACCTACTCATGATCAGCCTCTACCATTGTGCATATACAAGATGCATTCTGTTCTAGGTAACCCTGCTGCAACTACCAACCAACAAATTCCAGTTGCTGAGGCTGGACTGCCCGGAAAGACACCTACTCATGATCAGCCTCTACCATTGTGCATATACAAGATGCATTCTGAAAAGACTATGGAGGGCTCAAGTTCTGAAGATCCAACAGAAGATGGAAAAGGTCAAGCTACTGCAATGGAAGTAGAAGTGGCTGGGACTGAAATATCCTCAGAGACACCTCTTCATGATCAACCTTTATTATTGTGTGACATGGACTCTGAAAACACTTTGGAGGGTAACCCTGCTGGGACTGCAAAAACATCCCTTCATGATCAATTTCAGGCATCAAGCATAGCTGAAATGTATTCTGAACATACTACTGAGGGCTCATGCAAACGTGCTGGGACAGCAAAGGAACAATATGAGGTTACAGGAAGACAAGGTGAAACTGGAATTACCAGTGACATTGAGCAAGAAGACACTCCGCATCTGCCTTTTGTGAAAAAATCTCCATTTTGGAAAATGTTGGAATCCATGGATGCATTCAAAAGGTTTCCACAACAGCCACATTTTAAGCCCTTACTGAAGGTTAAAATGTTATGCCGTGAAGGACTAGCCCTTGGAGGTATGCATATCTTTGCCGCTGTGGTCGAGTACATTTCAAAGCTGCAGGTTGATGATCCTAGTGACTCCATCAACGACATTTTGGAAGCTCTAGTTGAACTGGAACGGCTGGGATTTGATGTCAAGGCACTCCAGGACCGACTGAATGAATTGCAAGACATGAAACTTAGGTTTGCAGAGCTTAAGAACAAGTCAGACGGAGTCAAAATCCTGATCACAAATTGTACGCATGAAAGAAGCAAAGGCTCTGAAGTTATCAGTGGGATGGATGCGGACATCAATGACTTGGAGGAAAAGATCAGAGGGATACAGGCAAAAAGGGCAAAGGTGGTCTCAGAGAGGGCGGCGAAAGATTCTGAAATCAGTATGTTGGAATCAGAAGCAAATGCTATCAATGAAGGCATTCAGAGCATCGAGCATGATTTCCAAAATCTAGCAGCAGCTGCATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

904

Amino Acids

100.98

Weight (kDa)

5.59

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Agenet	PF05641	16 - 91	5.8e-14	Agenet domain
Agenet	PF05641	172 - 232	1.9e-07	Agenet domain
DUF724	PF05266	710 - 902	8.5e-53	Protein of unknown function (DUF724)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24080 AT5G24080 AT5G24080
fragaria_vesca	FvH4_7g30670 FvH4_7g30670
malus_domestica	MD01G1211900.v1.1 MD07G1282400.v1.1
prunus_persica	Prupe.2G304500_v2.0.a1 Prupe.2G304500_v2.0.a1
pyrus_communis	pycom01g22230 pycom07g25630 pycom07g25640
rosa_chinensis	RchiOBHm_Chr1g0379601
rosa_laevigata	RLG00000026391
rosa_multiflora	Rmu_co8451749.1_g000001 Rmu_sc0011286.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280050
rosa_rugosa	Rorug01G0413200 Rorug01G0413300 Rorug01G0413400
rosa_samantha	Rh1AG436400 Rh1BG393400 Rh1CG406200 Rh1DG424300
rosa_wichuraiana	Rw1G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	2299
AccI	GTMKAC	1 cut(s)	1309
AccII	CGCG	3 cut(s)	92, 320, 335
AclWI	GGATC	4 cut(s)	103, 673, 1793, 2312
AcoI	YGGCCR	3 cut(s)	260, 341, 421
AcsI	RAATTY	5 cut(s)	836, 955, 1353, 1492, 1683
AcuI	CTGAAG	4 cut(s)	1485, 1815, 2243, 2532
AcvI	CACGTG	1 cut(s)	998
AfaI	GTAC	6 cut(s)	191, 239, 380, 800, 2294, 2488
AflII	CTTAAG	1 cut(s)	2444
AflIII	ACRYGT	2 cut(s)	318, 333
AgsI	TTSAA	7 cut(s)	166, 527, 614, 1513, 2185, 2301, 2360
AjiI	CACGTC	1 cut(s)	313
AjnI	CCWGG	2 cut(s)	111, 2394
AjuI	GAANNNNNNNTTGG	8 cut(s)	164, 196, 236, 268, 590, 622, 1392, 1424
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
Alw26I	GTCTC	4 cut(s)	526, 1505, 1865, 2599
AlwI	GGATC	4 cut(s)	103, 673, 1793, 2312
AlwNI	CAGNNNCTG	4 cut(s)	662, 1463, 1694, 2705
Ama87I	CYCGRG	1 cut(s)	284
AoxI	GGCC	4 cut(s)	260, 341, 421, 1258
ApeKI	GCWGC	8 cut(s)	15, 1063, 1291, 1664, 2305, 2699, 2702, 2705
ApoI	RAATTY	5 cut(s)	836, 955, 1353, 1492, 1683
AseI	ATTAAT	1 cut(s)	1521
Asp700I	GAANNNNTTC	3 cut(s)	293, 836, 2664
AspLEI	GCGC	2 cut(s)	66, 92
AspS9I	GGNCC	8 cut(s)	184, 214, 397, 468, 1070, 1126, 1259, 2398
AsuC2I	CCSGG	7 cut(s)	101, 285, 286, 345, 513, 1590, 1710
AsuHPI	GGTGA	2 cut(s)	364, 2093
AsuNHI	GCTAGC	1 cut(s)	1037
AvaI	CYCGRG	1 cut(s)	284
AvaII	GGWCC	7 cut(s)	184, 214, 397, 468, 1070, 1126, 2398
BanII	GRGCYC	2 cut(s)	1787, 2027
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbrPI	CACGTG	1 cut(s)	998
BbsI	GAAGAC	5 cut(s)	296, 1237, 1286, 2080, 2121
BbvCI	CCTCAGC	2 cut(s)	1575, 1695
BbvI	GCAGC	7 cut(s)	27, 1075, 1278, 1651, 2292, 2692, 2711
BccI	CCATC	9 cut(s)	638, 681, 913, 1265, 1325, 1532, 1805, 2339, 2521
BceAI	ACGGC	6 cut(s)	103, 106, 247, 713, 2226, 2384
BciT130I	CCWGG	2 cut(s)	113, 2396
BciVI	GTATCC	1 cut(s)	2562
BclI	TGATCA	5 cut(s)	1609, 1729, 1885, 1969, 2475
BcnI	CCSGG	7 cut(s)	101, 285, 286, 345, 513, 1590, 1710
BcoDI	GTCTC	4 cut(s)	526, 1505, 1865, 2599
BfaI	CTAG	7 cut(s)	1038, 1497, 1652, 2252, 2322, 2354, 2696
BfmI	CTRYAG	2 cut(s)	654, 2306
BfrI	CTTAAG	1 cut(s)	2444
BfuAI	ACCTGC	1 cut(s)	2299
BfuI	GTATCC	1 cut(s)	2562
Bme1390I	CCNGG	9 cut(s)	101, 113, 285, 286, 345, 513, 1590, 1710, 2396
Bme18I	GGWCC	7 cut(s)	184, 214, 397, 468, 1070, 1126, 2398
BmeT110I	CYCGRG	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	313
BmgT120I	GGNCC	8 cut(s)	184, 214, 397, 468, 1070, 1126, 1259, 2398
BmiI	GGNNCC	9 cut(s)	41, 98, 117, 216, 282, 398, 399, 860, 1071
BmrFI	CCNGG	9 cut(s)	101, 113, 285, 286, 345, 513, 1590, 1710, 2396
BmrI	ACTGGG	1 cut(s)	1293
BmtI	GCTAGC	1 cut(s)	1041
BmuI	ACTGGG	1 cut(s)	1293
BpiI	GAAGAC	5 cut(s)	296, 1237, 1286, 2080, 2121
BpmI	CTGGAG	3 cut(s)	58, 134, 2378
Bpu10I	CCTNAGC	2 cut(s)	1575, 1695
BpuEI	CTTGAG	1 cut(s)	1771
BpuMI	CCSGG	7 cut(s)	101, 285, 286, 345, 513, 1590, 1710
Bsa29I	ATCGAT	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	998
BsaI	GGTCTC	1 cut(s)	2599
BsaJI	CCNNGG	8 cut(s)	43, 85, 284, 512, 695, 1005, 2172, 2257
BsaXI	ACNNNNNCTCC	6 cut(s)	107, 137, 843, 873, 1260, 1290
Bse118I	RCCGGY	2 cut(s)	271, 302
Bse1I	ACTGG	7 cut(s)	187, 1128, 1288, 1688, 2092, 2097, 2367
Bse3DI	GCAATG	1 cut(s)	1839
BseBI	CCWGG	2 cut(s)	113, 2396
BseCI	ATCGAT	1 cut(s)	500
BseDI	CCNNGG	8 cut(s)	43, 85, 284, 512, 695, 1005, 2172, 2257
BseGI	GGATG	8 cut(s)	495, 742, 928, 1186, 1958, 2182, 2532, 2536
BseMI	GCAATG	1 cut(s)	1839
BseMII	CTCAG	7 cut(s)	157, 861, 1566, 1686, 1881, 2010, 2610
BseNI	ACTGG	7 cut(s)	187, 1128, 1288, 1688, 2092, 2097, 2367
BseRI	GAGGAG	2 cut(s)	451, 1240
BseX3I	CGGCCG	1 cut(s)	260
BseXI	GCAGC	7 cut(s)	27, 1075, 1278, 1651, 2292, 2692, 2711
BseYI	CCCAGC	5 cut(s)	1066, 1850, 1943, 2039, 2371
Bsh1236I	CGCG	3 cut(s)	92, 320, 335
Bsh1285I	CGRYCG	1 cut(s)	263
BshFI	GGCC	4 cut(s)	262, 343, 423, 1260
BshVI	ATCGAT	1 cut(s)	500
BsiEI	CGRYCG	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	284
BslFI	GGGAC	6 cut(s)	386, 410, 529, 1867, 1960, 2056
BsmAI	GTCTC	4 cut(s)	526, 1505, 1865, 2599
BsmFI	GGGAC	6 cut(s)	386, 410, 529, 1867, 1960, 2056
BsmI	GAATGC	4 cut(s)	1642, 1762, 2180, 2664
BsnI	GGCC	4 cut(s)	262, 343, 423, 1260
Bso31I	GGTCTC	1 cut(s)	2599
BsoBI	CYCGRG	1 cut(s)	284
Bsp1286I	GDGCHC	2 cut(s)	1787, 2027
Bsp19I	CCATGG	1 cut(s)	2172
BspANI	GGCC	4 cut(s)	262, 343, 423, 1260
BspCNI	CTCAG	7 cut(s)	156, 860, 1567, 1687, 1880, 2011, 2609
BspDI	ATCGAT	1 cut(s)	500
BspFNI	CGCG	3 cut(s)	92, 320, 335
BspHI	TCATGA	4 cut(s)	1606, 1726, 1882, 1966
BspLI	GGNNCC	9 cut(s)	41, 98, 117, 216, 282, 398, 399, 860, 1071
BspMAI	CTGCAG	1 cut(s)	2310
BspMI	ACCTGC	1 cut(s)	2299
BspOI	GCTAGC	1 cut(s)	1041
BspPI	GGATC	4 cut(s)	103, 673, 1793, 2312
BspTI	CTTAAG	1 cut(s)	2444
BspTNI	GGTCTC	1 cut(s)	2599
BsrDI	GCAATG	1 cut(s)	1839
BsrFI	RCCGGY	2 cut(s)	271, 302
BsrI	ACTGG	7 cut(s)	187, 1128, 1288, 1688, 2092, 2097, 2367
BssAI	RCCGGY	2 cut(s)	271, 302
BssECI	CCNNGG	8 cut(s)	43, 85, 284, 512, 695, 1005, 2172, 2257
BssT1I	CCWWGG	3 cut(s)	1005, 2172, 2257
Bst2UI	CCWGG	2 cut(s)	113, 2396
Bst4CI	ACNGT	2 cut(s)	635, 658
Bst6I	CTCTTC	1 cut(s)	1884
BstAFI	CTTAAG	1 cut(s)	2444
BstAPI	GCANNNNNTGC	2 cut(s)	578, 2705
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	3 cut(s)	304, 722, 1039
BstDEI	CTNAG	9 cut(s)	143, 847, 854, 1575, 1695, 1867, 2019, 2429, 2596
BstDSI	CCRYGG	3 cut(s)	85, 695, 2172
BstEII	GGTNACC	2 cut(s)	1655, 1934
BstF5I	GGATG	8 cut(s)	495, 742, 928, 1186, 1958, 2182, 2532, 2536
BstFNI	CGCG	3 cut(s)	92, 320, 335
BstHHI	GCGC	2 cut(s)	66, 92
BstMAI	GTCTC	4 cut(s)	526, 1505, 1865, 2599
BstMCI	CGRYCG	1 cut(s)	263
BstNI	CCWGG	2 cut(s)	113, 2396
BstNSI	RCATGY	1 cut(s)	1424
BstPI	GGTNACC	2 cut(s)	1655, 1934
BstSCI	CCNGG	9 cut(s)	99, 111, 283, 284, 343, 511, 1588, 1708, 2394
BstSFI	CTRYAG	2 cut(s)	654, 2306
BstUI	CGCG	3 cut(s)	92, 320, 335
BstV1I	GCAGC	7 cut(s)	27, 1075, 1278, 1651, 2292, 2692, 2711
BstV2I	GAAGAC	5 cut(s)	296, 1237, 1286, 2080, 2121
BstX2I	RGATCY	2 cut(s)	678, 1798
BstYI	RGATCY	2 cut(s)	678, 1798
BstZI	CGGCCG	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	500
BsuI	GTATCC	1 cut(s)	2562
BsuRI	GGCC	4 cut(s)	262, 343, 423, 1260
BsuTUI	ATCGAT	1 cut(s)	500
BtgI	CCRYGG	3 cut(s)	85, 695, 2172
BtgZI	GCGATG	2 cut(s)	932, 1428
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	8 cut(s)	495, 742, 928, 1186, 1958, 2182, 2532, 2536
BtsIMutI	CAGTG	5 cut(s)	640, 663, 1346, 2104, 2527
BveI	ACCTGC	1 cut(s)	2299
Cac8I	GCNNGC	3 cut(s)	304, 722, 1039
CaiI	CAGNNNCTG	4 cut(s)	662, 1463, 1694, 2705
CciI	TCATGA	4 cut(s)	1606, 1726, 1882, 1966
CfoI	GCGC	2 cut(s)	66, 92
Cfr10I	RCCGGY	2 cut(s)	271, 302
Cfr13I	GGNCC	8 cut(s)	184, 214, 397, 468, 1070, 1126, 1259, 2398
Cfr9I	CCCGGG	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	500
CseI	GACGC	2 cut(s)	326, 341
Csp6I	GTAC	6 cut(s)	190, 238, 379, 799, 2293, 2487
CviQI	GTAC	6 cut(s)	190, 238, 379, 799, 2293, 2487
DdeI	CTNAG	9 cut(s)	143, 847, 854, 1575, 1695, 1867, 2019, 2429, 2596
DraI	TTTAAA	1 cut(s)	814
EaeI	YGGCCR	3 cut(s)	260, 341, 421
EagI	CGGCCG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	1884
EarI	CTCTTC	1 cut(s)	1884
EclXI	CGGCCG	1 cut(s)	260
Eco130I	CCWWGG	3 cut(s)	1005, 2172, 2257
Eco24I	GRGCYC	2 cut(s)	1787, 2027
Eco31I	GGTCTC	1 cut(s)	2599
Eco47I	GGWCC	7 cut(s)	184, 214, 397, 468, 1070, 1126, 2398
Eco52I	CGGCCG	1 cut(s)	260
Eco57I	CTGAAG	4 cut(s)	1485, 1815, 2243, 2532
Eco72I	CACGTG	1 cut(s)	998
Eco88I	CYCGRG	1 cut(s)	284
Eco91I	GGTNACC	2 cut(s)	1655, 1934
EcoO109I	RGGNCCY	4 cut(s)	214, 397, 1070, 1259
EcoO65I	GGTNACC	2 cut(s)	1655, 1934
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	2 cut(s)	111, 2394
EcoT14I	CCWWGG	3 cut(s)	1005, 2172, 2257
EcoT22I	ATGCAT	4 cut(s)	1644, 1764, 2182, 2271
EcoT38I	GRGCYC	2 cut(s)	1787, 2027
ErhI	CCWWGG	3 cut(s)	1005, 2172, 2257
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	6 cut(s)	386, 410, 529, 1867, 1960, 2056
FauI	CCCGC	1 cut(s)	408
FauNDI	CATATG	1 cut(s)	864
FbaI	TGATCA	5 cut(s)	1609, 1729, 1885, 1969, 2475
FblI	GTMKAC	1 cut(s)	1309
FokI	GGATG	8 cut(s)	502, 749, 935, 1173, 1945, 2189, 2539, 2543
FriOI	GRGCYC	2 cut(s)	1787, 2027
FspAI	RTGCGCAY	1 cut(s)	65
FspBI	CTAG	7 cut(s)	1038, 1497, 1652, 2252, 2322, 2354, 2696
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	2 cut(s)	65, 91
GsaI	CCCAGC	5 cut(s)	1070, 1854, 1947, 2043, 2375
GsuI	CTGGAG	3 cut(s)	58, 134, 2378
HaeIII	GGCC	4 cut(s)	262, 343, 423, 1260
HgaI	GACGC	2 cut(s)	326, 341
HhaI	GCGC	2 cut(s)	66, 92
Hin6I	GCGC	2 cut(s)	64, 90
HinP1I	GCGC	2 cut(s)	64, 90
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HphI	GGTGA	2 cut(s)	364, 2093
Hpy166II	GTNNAC	5 cut(s)	240, 316, 457, 1310, 1343
Hpy8I	GTNNAC	5 cut(s)	240, 316, 457, 1310, 1343
Hpy99I	CGWCG	6 cut(s)	109, 127, 268, 311, 314, 335
HpyCH4III	ACNGT	2 cut(s)	635, 658
HpyCH4IV	ACGT	4 cut(s)	246, 312, 997, 2035
HpyF3I	CTNAG	9 cut(s)	143, 847, 854, 1575, 1695, 1867, 2019, 2429, 2596
HpySE526I	ACGT	4 cut(s)	246, 312, 997, 2035
HspAI	GCGC	2 cut(s)	64, 90
KflI	GGGWCCC	1 cut(s)	397
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	5 cut(s)	1609, 1729, 1885, 1969, 2475
LmnI	GCTCC	5 cut(s)	39, 115, 286, 864, 1335
Lsp1109I	GCAGC	7 cut(s)	27, 1075, 1278, 1651, 2292, 2692, 2711
MaeI	CTAG	7 cut(s)	1038, 1497, 1652, 2252, 2322, 2354, 2696
MaeII	ACGT	4 cut(s)	246, 312, 997, 2035
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	678, 1798
MhlI	GDGCHC	2 cut(s)	1787, 2027
MluI	ACGCGT	2 cut(s)	318, 333
MlyI	GAGTC	7 cut(s)	448, 511, 899, 1454, 1907, 2321, 2472
MmeI	TCCRAC	7 cut(s)	706, 745, 1184, 1246, 1826, 2145, 2613
Mph1103I	ATGCAT	4 cut(s)	1644, 1764, 2182, 2271
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	3 cut(s)	293, 836, 2664
MseI	TTAA	9 cut(s)	813, 987, 1154, 1178, 1239, 1521, 2211, 2229, 2445
MspA1I	CMGCKG	4 cut(s)	229, 1066, 2282, 2705
MspCI	CTTAAG	1 cut(s)	2444
MspR9I	CCNGG	9 cut(s)	101, 113, 285, 286, 345, 513, 1590, 1710, 2396
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	4 cut(s)	1642, 1762, 2180, 2664
MvaI	CCWGG	2 cut(s)	113, 2396
MvnI	CGCG	3 cut(s)	92, 320, 335
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	7 cut(s)	101, 285, 286, 345, 513, 1590, 1710
NcoI	CCATGG	1 cut(s)	2172
NdeI	CATATG	1 cut(s)	864
NgoMIV	GCCGGC	1 cut(s)	302
NheI	GCTAGC	1 cut(s)	1037
NlaIV	GGNNCC	9 cut(s)	41, 98, 117, 216, 282, 398, 399, 860, 1071
NmeAIII	GCCGAG	1 cut(s)	68
NmuCI	GTSAC	8 cut(s)	202, 440, 805, 842, 993, 1904, 2099, 2324
NsbI	TGCGCA	1 cut(s)	65
NsiI	ATGCAT	4 cut(s)	1644, 1764, 2182, 2271
NspI	RCATGY	1 cut(s)	1424
PagI	TCATGA	4 cut(s)	1606, 1726, 1882, 1966
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	4 cut(s)	1642, 1762, 2180, 2664
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	3 cut(s)	293, 836, 2664
PfeI	GAWTC	9 cut(s)	127, 497, 565, 1051, 1196, 1439, 2168, 2615, 2636
PflFI	GACNNNGTC	2 cut(s)	1285, 2462
PfoI	TCCNGGA	2 cut(s)	111, 2394
PleI	GAGTC	7 cut(s)	447, 511, 898, 1454, 1907, 2321, 2471
PmaCI	CACGTG	1 cut(s)	998
PmlI	CACGTG	1 cut(s)	998
PpsI	GAGTC	7 cut(s)	447, 511, 898, 1454, 1907, 2321, 2471
Ppu21I	YACGTR	1 cut(s)	998
PpuMI	RGGWCCY	3 cut(s)	214, 397, 1070
PshBI	ATTAAT	1 cut(s)	1521
Psp5II	RGGWCCY	3 cut(s)	214, 397, 1070
Psp6I	CCWGG	2 cut(s)	111, 2394
PspCI	CACGTG	1 cut(s)	998
PspEI	GGTNACC	2 cut(s)	1655, 1934
PspFI	CCCAGC	5 cut(s)	1066, 1850, 1943, 2039, 2371
PspGI	CCWGG	2 cut(s)	111, 2394
PspN4I	GGNNCC	9 cut(s)	41, 98, 117, 216, 282, 398, 399, 860, 1071
PspPI	GGNCC	8 cut(s)	184, 214, 397, 468, 1070, 1126, 1259, 2398
PspPPI	RGGWCCY	3 cut(s)	214, 397, 1070
PsrI	GAACNNNNNNTAC	2 cut(s)	1104, 1136
PstI	CTGCAG	1 cut(s)	2310
PstNI	CAGNNNCTG	4 cut(s)	662, 1463, 1694, 2705
PsuI	RGATCY	2 cut(s)	678, 1798
PsyI	GACNNNGTC	2 cut(s)	1285, 2462
PvuII	CAGCTG	2 cut(s)	1066, 2705
RsaI	GTAC	6 cut(s)	191, 239, 380, 800, 2294, 2488
RsaNI	GTAC	6 cut(s)	190, 238, 379, 799, 2293, 2487
SaqAI	TTAA	9 cut(s)	813, 987, 1154, 1178, 1239, 1521, 2211, 2229, 2445
Sau96I	GGNCC	8 cut(s)	184, 214, 397, 468, 1070, 1126, 1259, 2398
SchI	GAGTC	7 cut(s)	448, 511, 899, 1454, 1907, 2321, 2472
ScrFI	CCNGG	9 cut(s)	101, 113, 285, 286, 345, 513, 1590, 1710, 2396
SduI	GDGCHC	2 cut(s)	1787, 2027
SfcI	CTRYAG	2 cut(s)	654, 2306
SgrAI	CRCCGGYG	1 cut(s)	271
SinI	GGWCC	7 cut(s)	184, 214, 397, 468, 1070, 1126, 2398
SmaI	CCCGGG	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	1786, 2444
SmoI	CTYRAG	2 cut(s)	1786, 2444
SspMI	CTAG	7 cut(s)	1038, 1497, 1652, 2252, 2322, 2354, 2696
StyD4I	CCNGG	9 cut(s)	99, 111, 283, 284, 343, 511, 1588, 1708, 2394
StyI	CCWWGG	3 cut(s)	1005, 2172, 2257
TaaI	ACNGT	2 cut(s)	635, 658
TaiI	ACGT	4 cut(s)	249, 315, 1000, 2038
TaqI	TCGA	7 cut(s)	125, 170, 297, 500, 902, 2289, 2676
TaqII	GACCGA	1 cut(s)	2415
TatI	WGTACW	4 cut(s)	189, 237, 798, 2292
TauI	GCSGC	5 cut(s)	121, 229, 271, 2282, 2609
TfiI	GAWTC	9 cut(s)	127, 497, 565, 1051, 1196, 1439, 2168, 2615, 2636
Tru1I	TTAA	9 cut(s)	813, 987, 1154, 1178, 1239, 1521, 2211, 2229, 2445
Tru9I	TTAA	9 cut(s)	813, 987, 1154, 1178, 1239, 1521, 2211, 2229, 2445
TscAI	CASTG	5 cut(s)	640, 663, 1353, 2104, 2527
TseFI	GTSAC	8 cut(s)	202, 440, 805, 842, 993, 1904, 2099, 2324
TseI	GCWGC	8 cut(s)	15, 1063, 1291, 1664, 2305, 2699, 2702, 2705
Tsp45I	GTSAC	8 cut(s)	202, 440, 805, 842, 993, 1904, 2099, 2324
TspGWI	ACGGA	3 cut(s)	221, 248, 2475
TspMI	CCCGGG	1 cut(s)	284
TspRI	CASTG	5 cut(s)	640, 663, 1353, 2104, 2527
Tth111I	GACNNNGTC	2 cut(s)	1285, 2462
Vha464I	CTTAAG	1 cut(s)	2444
VpaK11BI	GGWCC	7 cut(s)	184, 214, 397, 468, 1070, 1126, 2398
VspI	ATTAAT	1 cut(s)	1521
XapI	RAATTY	5 cut(s)	836, 955, 1353, 1492, 1683
XceI	RCATGY	1 cut(s)	1424
XmaI	CCCGGG	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	1309
XmnI	GAANNNNTTC	3 cut(s)	293, 836, 2664
XspI	CTAG	7 cut(s)	1038, 1497, 1652, 2252, 2322, 2354, 2696
Zsp2I	ATGCAT	4 cut(s)	1644, 1764, 2182, 2271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.