Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0007255

Physical Location & Seq

Genomic Coordinates Forward (+)

66085418 .. 66086743

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG436400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGATGGTGATGCTACTATTTGGACCTCCAACACTTCAGGCACCGGCGTTGAATTTGCATCCCTATTAGAATCTGGAAACTTCATCTTATACAATGAAGCCAACCGCCCTATGTGGCAGAGTTTCTCACATCCATCTGATACTCTCCTCCCAAACCAGCCTCTTTCGGTCTCTTTAGAGCTCACAACAGCTAAGTCACCCTCTCATGGTGGCTATTATGCTCTCAAAATGCTTCAACAGCGCACTTCGTTAAGCCTTGCATTGACTTATAATATGCCAGAAAGTACTTACAATACCTCACCAGAATCTTACTATAACAACTCTTACTGGACTGGACCGGAGATATCAAATGTGACAGGAGATGTCATAGCTGTTTTGGATGAAGCAGGAAGCTTTGGAATTGTGTACGGTGAGTCTTCAGATGGAGCTGTATATGTGTACAAGAATGATGATGATGATGGAGGACTATCAGTAGCCTCAAACAAATCAAACAGATTGTCAGTTCTTCGGAGATTGACACTCGAAACTAATGGAAATTTGCGTTTGTATCGTTGGGATGATGATGTCAATGGGTCAAGGCAATGGGTGCCAGAGTGGGCTGCAGTTTCAACACCATGTGCCATTTCTGGAATTTGTGGTAATGGGATTTGTACTTTAGATAGGACCAAGACCAATGCTTCTTGCTCATGTCTGCCAGGGACTTATAAGGTGAATAGTGGAGGTCAGTGTTCAGAGAACTCATCATTGATTGGAAGATGTGATTCGAAGCAGGATTATCAACCTTCACAGTTTAGAATGTCCACGGTGCAGCAAACCAATTACTATTTGCCAGAATTTTCAGTCATAGCAAATTATAGTGACATTGAAAATGTATCAAAATGTGGAGATGTTTGCTTAGCTGATTGTGAATGTGTTGCTTCAGTTTACGGGCTTGATGATGAAAATGCTTACTGTTGGGTTTTGAGGAGCATGGAGTTTGGTGGCTTTCAGGACCCTGGCTCAACCTTGTTTGTCAAAATTAGGTCCAATGGCTCGGTGGTACCAGAGGAAGATACAAGAGGATCCGGGGATTCATCAGATGGCTCTAGTAGTAACAGAGAAAAGGTTTTGGTTATACCTATTGTTCTGAGCATGACTGTTCTTATAGCCCTCCTATGTCTTTTACTATATTACAATGTGCATAAGAGGAGATCCTTCAAGAGAGCCATGGAGAAGTCTTTAATCTTGTCTGGTGCTCCAATGAATTTTAGTTACCGTGATTTACAAGTTCGTACCTGGAATTTTTCACAGCTGCTTGGAACTGGTAAGTATGGACTACAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

441

Amino Acids

48.46

Weight (kDa)

4.81

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	4 - 60	3.3e-10	D-mannose binding lectin
S_locus_glycop	PF00954	145 - 233	3.5e-08	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24080 AT5G24080 AT5G24080
fragaria_vesca	FvH4_7g30670 FvH4_7g30670
malus_domestica	MD01G1211900.v1.1 MD07G1282400.v1.1
prunus_persica	Prupe.2G304500_v2.0.a1 Prupe.2G304500_v2.0.a1
pyrus_communis	pycom01g22230 pycom07g25630 pycom07g25640
rosa_chinensis	RchiOBHm_Chr1g0379601
rosa_laevigata	RLG00000026391
rosa_multiflora	Rmu_co8451749.1_g000001 Rmu_sc0011286.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280050
rosa_rugosa	Rorug01G0413200 Rorug01G0413300 Rorug01G0413400
rosa_samantha	Rh1AG436400 Rh1BG393400 Rh1CG406200 Rh1DG424300
rosa_wichuraiana	Rw1G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	270, 705
Acc65I	GGTACC	1 cut(s)	1039
AccB1I	GGYRCC	3 cut(s)	41, 586, 1039
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	3 cut(s)	1056, 1069, 1185
AcsI	RAATTY	6 cut(s)	53, 535, 630, 833, 1243, 1279
AcuI	CTGAAG	3 cut(s)	21, 402, 903
AdeI	CACNNNGTG	1 cut(s)	617
AfaI	GTAC	6 cut(s)	286, 407, 440, 652, 1041, 1273
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	5 cut(s)	53, 236, 609, 866, 1198
AjnI	CCWGG	3 cut(s)	694, 994, 1274
AluBI	AGCT	7 cut(s)	181, 191, 371, 393, 428, 899, 1291
AluI	AGCT	7 cut(s)	181, 191, 371, 393, 428, 899, 1291
Alw21I	GWGCWC	2 cut(s)	183, 1237
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	3 cut(s)	1056, 1069, 1185
ApeKI	GCWGC	3 cut(s)	599, 808, 1291
ApoI	RAATTY	6 cut(s)	53, 535, 630, 833, 1243, 1279
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
Asp718I	GGTACC	1 cut(s)	1039
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	5 cut(s)	24, 335, 663, 991, 1023
AsuC2I	CCSGG	1 cut(s)	1066
AsuHPI	GGTGA	5 cut(s)	20, 189, 291, 422, 721
AsuII	TTCGAA	1 cut(s)	764
AvaII	GGWCC	5 cut(s)	24, 335, 663, 991, 1023
BamHI	GGATCC	1 cut(s)	1061
BanI	GGYRCC	3 cut(s)	41, 586, 1039
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	183, 1237
BbvI	GCAGC	3 cut(s)	586, 820, 1278
BccI	CCATC	4 cut(s)	142, 416, 452, 1073
BciT130I	CCWGG	3 cut(s)	696, 996, 1276
BcnI	CCSGG	1 cut(s)	1066
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	1086
BfmI	CTRYAG	1 cut(s)	600
BisI	GCNGC	3 cut(s)	600, 809, 1292
BlpI	GCTNAGC	1 cut(s)	895
BlsI	GCNGC	3 cut(s)	601, 810, 1293
BmcAI	AGTACT	1 cut(s)	286
Bme1390I	CCNGG	4 cut(s)	696, 996, 1066, 1276
Bme18I	GGWCC	5 cut(s)	24, 335, 663, 991, 1023
BmgT120I	GGNCC	5 cut(s)	24, 335, 663, 991, 1023
BmiI	GGNNCC	5 cut(s)	43, 588, 993, 1041, 1063
BmrFI	CCNGG	4 cut(s)	696, 996, 1066, 1276
BmsI	GCATC	1 cut(s)	68
BpiI	GAAGAC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	895
Bpu14I	TTCGAA	1 cut(s)	764
BpuMI	CCSGG	1 cut(s)	1066
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	5 cut(s)	695, 801, 994, 1065, 1206
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	3 cut(s)	332, 337, 1306
Bse3DI	GCAATG	1 cut(s)	587
BseBI	CCWGG	3 cut(s)	696, 996, 1276
BseDI	CCNNGG	5 cut(s)	695, 801, 994, 1065, 1206
BseGI	GGATG	5 cut(s)	10, 59, 130, 385, 562
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	1 cut(s)	1118
BseNI	ACTGG	3 cut(s)	332, 337, 1306
BseRI	GAGGAG	3 cut(s)	137, 979, 1201
BseXI	GCAGC	3 cut(s)	586, 820, 1278
BsgI	GTGCAG	1 cut(s)	827
BshNI	GGYRCC	3 cut(s)	41, 586, 1039
BsiHKAI	GWGCWC	2 cut(s)	183, 1237
BsiSI	CCGG	3 cut(s)	45, 338, 1065
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	712
Bso31I	GGTCTC	1 cut(s)	175
Bsp119I	TTCGAA	1 cut(s)	764
Bsp1286I	GDGCHC	2 cut(s)	183, 1237
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	1061, 1190
Bsp1720I	GCTNAGC	1 cut(s)	895
Bsp19I	CCATGG	1 cut(s)	1206
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	1119
BspLI	GGNNCC	5 cut(s)	43, 588, 993, 1041, 1063
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	3 cut(s)	1056, 1069, 1185
BspT104I	TTCGAA	1 cut(s)	764
BspT107I	GGYRCC	3 cut(s)	41, 586, 1039
BspTNI	GGTCTC	1 cut(s)	175
BsrDI	GCAATG	1 cut(s)	587
BsrFI	RCCGGY	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	332, 337, 1306
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	5 cut(s)	695, 801, 994, 1065, 1206
BssMI	GATC	2 cut(s)	1061, 1190
BssT1I	CCWWGG	1 cut(s)	1206
Bst2UI	CCWGG	3 cut(s)	696, 996, 1276
Bst4CI	ACNGT	6 cut(s)	410, 789, 805, 953, 1138, 1256
BstAPI	GCANNNNNTGC	1 cut(s)	586
BstAUI	TGTACA	1 cut(s)	438
BstBI	TTCGAA	1 cut(s)	764
BstDEI	CTNAG	3 cut(s)	192, 895, 1127
BstDSI	CCRYGG	2 cut(s)	801, 1206
BstF5I	GGATG	5 cut(s)	10, 59, 130, 385, 562
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	1064, 1193
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	1061, 1190
BstMWI	GCNNNNNNNGC	2 cut(s)	238, 586
BstNI	CCWGG	3 cut(s)	696, 996, 1276
BstSCI	CCNGG	4 cut(s)	694, 994, 1064, 1274
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	3 cut(s)	586, 820, 1278
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	2 cut(s)	1061, 1190
BstYI	RGATCY	2 cut(s)	1061, 1190
BtgI	CCRYGG	2 cut(s)	801, 1206
BtsCI	GGATG	5 cut(s)	10, 59, 130, 385, 562
BtsIMutI	CAGTG	1 cut(s)	731
CfoI	GCGC	1 cut(s)	243
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	5 cut(s)	24, 335, 663, 991, 1023
Csp6I	GTAC	6 cut(s)	285, 406, 439, 651, 1040, 1272
CviAII	CATG	6 cut(s)	206, 615, 687, 970, 1132, 1207
CviQI	GTAC	6 cut(s)	285, 406, 439, 651, 1040, 1272
DdeI	CTNAG	3 cut(s)	192, 895, 1127
DpnI	GATC	2 cut(s)	1063, 1192
DpnII	GATC	2 cut(s)	1061, 1190
DraIII	CACNNNGTG	1 cut(s)	617
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	1206
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	175
Eco32I	GATATC	1 cut(s)	345
Eco47I	GGWCC	5 cut(s)	24, 335, 663, 991, 1023
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	3 cut(s)	21, 402, 903
EcoICRI	GAGCTC	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	991
EcoRII	CCWGG	3 cut(s)	694, 994, 1274
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	1 cut(s)	1206
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	1206
FaeI	CATG	6 cut(s)	209, 618, 690, 973, 1135, 1210
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	6 cut(s)	205, 614, 686, 969, 1131, 1206
Fnu4HI	GCNGC	3 cut(s)	600, 809, 1292
FokI	GGATG	5 cut(s)	17, 46, 117, 392, 569
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	3 cut(s)	600, 809, 1292
FspBI	CTAG	1 cut(s)	1086
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	3 cut(s)	600, 809, 1292
HapII	CCGG	3 cut(s)	45, 338, 1065
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	6 cut(s)	209, 618, 690, 973, 1135, 1210
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	5 cut(s)	71, 305, 413, 761, 1070
HpaII	CCGG	3 cut(s)	45, 338, 1065
HphI	GGTGA	5 cut(s)	20, 189, 291, 422, 721
Hpy166II	GTNNAC	4 cut(s)	406, 439, 801, 925
Hpy188I	TCNGA	6 cut(s)	139, 421, 510, 733, 1078, 1128
Hpy188III	TCNNGA	4 cut(s)	75, 627, 989, 1198
Hpy8I	GTNNAC	4 cut(s)	406, 439, 801, 925
HpyAV	CCTTC	2 cut(s)	792, 1204
HpyCH4III	ACNGT	6 cut(s)	410, 789, 805, 953, 1138, 1256
HpyCH4V	TGCA	5 cut(s)	59, 260, 602, 808, 1180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	238, 586
HpyF3I	CTNAG	3 cut(s)	192, 895, 1127
Hsp92II	CATG	6 cut(s)	209, 618, 690, 973, 1135, 1210
HspAI	GCGC	1 cut(s)	241
KpnI	GGTACC	1 cut(s)	1043
Kzo9I	GATC	2 cut(s)	1061, 1190
LmnI	GCTCC	3 cut(s)	425, 966, 1240
Lsp1109I	GCAGC	3 cut(s)	586, 820, 1278
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	1086
MaeIII	GTNAC	5 cut(s)	195, 352, 857, 1091, 1250
MalI	GATC	2 cut(s)	1063, 1192
MboI	GATC	2 cut(s)	1061, 1190
MboII	GAAGA	4 cut(s)	408, 497, 765, 1061
MflI	RGATCY	2 cut(s)	1061, 1190
MhlI	GDGCHC	2 cut(s)	183, 1237
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	1 cut(s)	54
MseI	TTAA	2 cut(s)	251, 1220
MspA1I	CMGCKG	1 cut(s)	1291
MspI	CCGG	3 cut(s)	45, 338, 1065
MspR9I	CCNGG	4 cut(s)	696, 996, 1066, 1276
MvaI	CCWGG	3 cut(s)	696, 996, 1276
MwoI	GCNNNNNNNGC	2 cut(s)	238, 586
NciI	CCSGG	1 cut(s)	1066
NcoI	CCATGG	1 cut(s)	1206
NdeII	GATC	2 cut(s)	1061, 1190
NlaIII	CATG	6 cut(s)	209, 618, 690, 973, 1135, 1210
NlaIV	GGNNCC	5 cut(s)	43, 588, 993, 1041, 1063
NmuCI	GTSAC	3 cut(s)	195, 352, 857
NspV	TTCGAA	1 cut(s)	764
PfeI	GAWTC	4 cut(s)	71, 305, 761, 1070
PkrI	GCNGC	3 cut(s)	601, 810, 1293
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PpuMI	RGGWCCY	1 cut(s)	991
PsiI	TTATAA	2 cut(s)	270, 705
Psp124BI	GAGCTC	1 cut(s)	183
Psp5II	RGGWCCY	1 cut(s)	991
Psp6I	CCWGG	3 cut(s)	694, 994, 1274
PspGI	CCWGG	3 cut(s)	694, 994, 1274
PspN4I	GGNNCC	5 cut(s)	43, 588, 993, 1041, 1063
PspPI	GGNCC	5 cut(s)	24, 335, 663, 991, 1023
PspPPI	RGGWCCY	1 cut(s)	991
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	2 cut(s)	1061, 1190
PvuII	CAGCTG	1 cut(s)	1291
RsaI	GTAC	6 cut(s)	286, 407, 440, 652, 1041, 1273
RsaNI	GTAC	6 cut(s)	285, 406, 439, 651, 1040, 1272
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	251, 1220
SatI	GCNGC	3 cut(s)	600, 809, 1292
Sau3AI	GATC	2 cut(s)	1061, 1190
Sau96I	GGNCC	5 cut(s)	24, 335, 663, 991, 1023
ScaI	AGTACT	1 cut(s)	286
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	4 cut(s)	696, 996, 1066, 1276
SduI	GDGCHC	2 cut(s)	183, 1237
SfaNI	GCATC	1 cut(s)	68
SfcI	CTRYAG	1 cut(s)	600
SfuI	TTCGAA	1 cut(s)	764
SgrAI	CRCCGGYG	1 cut(s)	44
SinI	GGWCC	5 cut(s)	24, 335, 663, 991, 1023
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	1086
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	4 cut(s)	694, 994, 1064, 1274
StyI	CCWWGG	1 cut(s)	1206
TaaI	ACNGT	6 cut(s)	410, 789, 805, 953, 1138, 1256
TaqI	TCGA	2 cut(s)	522, 764
TaqII	GACCGA	1 cut(s)	157
TatI	WGTACW	3 cut(s)	284, 438, 650
TfiI	GAWTC	4 cut(s)	71, 305, 761, 1070
Tru1I	TTAA	2 cut(s)	251, 1220
Tru9I	TTAA	2 cut(s)	251, 1220
TscAI	CASTG	1 cut(s)	731
TseFI	GTSAC	3 cut(s)	195, 352, 857
TseI	GCWGC	3 cut(s)	599, 808, 1291
Tsp45I	GTSAC	3 cut(s)	195, 352, 857
TspDTI	ATGAA	6 cut(s)	73, 111, 396, 954, 1062, 1256
TspRI	CASTG	1 cut(s)	731
VpaK11BI	GGWCC	5 cut(s)	24, 335, 663, 991, 1023
XapI	RAATTY	6 cut(s)	53, 535, 630, 833, 1243, 1279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1033
XspI	CTAG	1 cut(s)	1086
ZrmI	AGTACT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.