Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8451749.1

Orthogroup ID

OG0007255

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1638

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8451749.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

atgatgatgtcaatgggtcaaggcaatgggaccaaggccaatgcttcttgctcatgtctgccagggacttataaggtgaatagtggaggtcagtgttcagggaactcatcattgattggaagatgtgattcgaagcaggattatcaaccttcacagtttagaatgtccacggtgcagcaaaccaattactatttgccaaaattttcagtcatagcaaattatagtgacattgaaaatgtatcaaaatgtggagatgtttgcttagctgattgtgaatgtgttgcttcagtttacgggcttgatgatgaaaatgcttattgttgggttttgaggagcatggagtttggtggctttcaggaccctggctcaaccttgtttgtcaaaattaggtccaatggctcggtggtaccagagggagatacaagaggatccggggattcatcagatgggtctagtagtaacagagaaaaggttttggttatacctattgttctgagcatgactgttcttatagccctcctatgtctcttactatattacaatgtgcataagaggagatccttcaagagagccatggagaagtctttaatcttgtctggtgctccaatgaattttagttaccgtgatttacaagttcgtacctggaatttttcacagctgcttggaactgggggctttgggagtgtgtacaagggaagccttgcagatggtactttggttgcagttaaaaaacttgaaagggttttgccccatggggagaaggagtttataactgaagtcaacaccattggctctatgcatcacatgaacttggttcggctatgtggctactgctccgaagcttcacaacggcttttggtttatgaattcatgaaaaatgggtcattggacaaatggatatttccctcaaaatattctggacataggttgctggactgggaaactcggtttaacatagcagtgggaactgcacaagggattgcatattttcatgagcaatgtcgagatcgaataatacactgtgacatcaagccggaaaatattcttatagatgaaaatttctgtcctaaagtgtctgactttggactagctaagttgatgggaagagagcactcacaggttgttaccatggtcagaggaactagaggctatttggctccagagtgggtgagtaaccggcctataactgtcaaggctgatgtttatagctatggcatgcttctcctagagatcgttggtggtcgaagaaaccttgacatgtcttttgatgttgatgacttcttctatcctggatgggcttttaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

435

Amino Acids

48.53

Weight (kDa)

7.84

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24080 AT5G24080 AT5G24080
fragaria_vesca	FvH4_7g30670 FvH4_7g30670
malus_domestica	MD01G1211900.v1.1 MD07G1282400.v1.1
prunus_persica	Prupe.2G304500_v2.0.a1 Prupe.2G304500_v2.0.a1
pyrus_communis	pycom01g22230 pycom07g25630 pycom07g25640
rosa_chinensis	RchiOBHm_Chr1g0379601
rosa_laevigata	RLG00000026391
rosa_multiflora	Rmu_co8451749.1_g000001 Rmu_sc0011286.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280050
rosa_rugosa	Rorug01G0413200 Rorug01G0413300 Rorug01G0413400
rosa_samantha	Rh1AG436400 Rh1BG393400 Rh1CG406200 Rh1DG424300
rosa_wichuraiana	Rw1G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	72, 770
Acc65I	GGTACC	1 cut(s)	406
AccB1I	GGYRCC	1 cut(s)	406
AclWI	GGATC	3 cut(s)	423, 436, 552
AcsI	RAATTY	5 cut(s)	200, 610, 646, 866, 1057
AcuI	CTGAAG	2 cut(s)	270, 795
AfaI	GTAC	4 cut(s)	408, 640, 689, 712
AflIII	ACRYGT	1 cut(s)	1257
AgsI	TTSAA	3 cut(s)	233, 565, 737
AjnI	CCWGG	4 cut(s)	61, 361, 641, 1288
AluBI	AGCT	5 cut(s)	266, 658, 842, 1091, 1209
AluI	AGCT	5 cut(s)	266, 658, 842, 1091, 1209
Alw21I	GWGCWC	2 cut(s)	604, 1113
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	3 cut(s)	423, 436, 552
AoxI	GGCC	2 cut(s)	36, 1178
ApeKI	GCWGC	2 cut(s)	175, 658
ApoI	RAATTY	5 cut(s)	200, 610, 646, 866, 1057
ArsI	GACNNNNNNTTYG	2 cut(s)	1247, 1279
Asp700I	GAANNNNTTC	1 cut(s)	1041
Asp718I	GGTACC	1 cut(s)	406
AspS9I	GGNCC	3 cut(s)	30, 358, 390
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	2 cut(s)	88, 1180
AsuII	TTCGAA	1 cut(s)	131
AvaII	GGWCC	3 cut(s)	30, 358, 390
BaeI	ACNNNNGTAYC	2 cut(s)	702, 735
BamHI	GGATCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	406
Bbv12I	GWGCWC	2 cut(s)	604, 1113
BbvI	GCAGC	2 cut(s)	187, 645
BccI	CCATC	4 cut(s)	440, 701, 1093, 1287
BceAI	ACGGC	1 cut(s)	866
BciT130I	CCWGG	4 cut(s)	63, 363, 643, 1290
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	4 cut(s)	453, 1088, 1143, 1226
BisI	GCNGC	2 cut(s)	176, 659
BlpI	GCTNAGC	1 cut(s)	262
BlsI	GCNGC	2 cut(s)	177, 660
Bme1390I	CCNGG	5 cut(s)	63, 363, 433, 643, 1290
Bme18I	GGWCC	3 cut(s)	30, 358, 390
BmgT120I	GGNCC	3 cut(s)	30, 358, 390
BmiI	GGNNCC	5 cut(s)	31, 360, 408, 430, 1158
BmrFI	CCNGG	5 cut(s)	63, 363, 433, 643, 1290
BmrI	ACTGGG	2 cut(s)	678, 946
BmsI	GCATC	1 cut(s)	808
BmuI	ACTGGG	2 cut(s)	678, 946
BpmI	CTGGAG	1 cut(s)	1143
Bpu1102I	GCTNAGC	1 cut(s)	262
Bpu14I	TTCGAA	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	8 cut(s)	33, 62, 168, 361, 432, 573, 751, 1128
BsaXI	ACNNNNNCTCC	2 cut(s)	749, 779
Bse118I	RCCGGY	1 cut(s)	1176
Bse1I	ACTGG	2 cut(s)	673, 941
Bse3DI	GCAATG	2 cut(s)	31, 1004
BseBI	CCWGG	4 cut(s)	63, 363, 643, 1290
BseDI	CCNNGG	8 cut(s)	33, 62, 168, 361, 432, 573, 751, 1128
BseGI	GGATG	1 cut(s)	1298
BseMI	GCAATG	2 cut(s)	31, 1004
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	2 cut(s)	673, 941
BseRI	GAGGAG	2 cut(s)	346, 568
BseXI	GCAGC	2 cut(s)	187, 645
BsgI	GTGCAG	2 cut(s)	194, 954
BshFI	GGCC	2 cut(s)	38, 1180
BshNI	GGYRCC	1 cut(s)	406
BsiHKAI	GWGCWC	2 cut(s)	604, 1113
BsiSI	CCGG	3 cut(s)	432, 1034, 1177
BslFI	GGGAC	2 cut(s)	43, 79
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	43, 79
BsnI	GGCC	2 cut(s)	38, 1180
Bsp119I	TTCGAA	1 cut(s)	131
Bsp1286I	GDGCHC	2 cut(s)	604, 1113
Bsp1407I	TGTACA	1 cut(s)	687
Bsp143I	GATC	4 cut(s)	428, 557, 1006, 1230
Bsp1720I	GCTNAGC	1 cut(s)	262
Bsp19I	CCATGG	3 cut(s)	573, 751, 1128
BspANI	GGCC	2 cut(s)	38, 1180
BspCNI	CTCAG	1 cut(s)	486
BspHI	TCATGA	2 cut(s)	870, 991
BspLI	GGNNCC	5 cut(s)	31, 360, 408, 430, 1158
BspPI	GGATC	3 cut(s)	423, 436, 552
BspT104I	TTCGAA	1 cut(s)	131
BspT107I	GGYRCC	1 cut(s)	406
BsrDI	GCAATG	2 cut(s)	31, 1004
BsrFI	RCCGGY	1 cut(s)	1176
BsrGI	TGTACA	1 cut(s)	687
BsrI	ACTGG	2 cut(s)	673, 941
BssAI	RCCGGY	1 cut(s)	1176
BssECI	CCNNGG	8 cut(s)	33, 62, 168, 361, 432, 573, 751, 1128
BssMI	GATC	4 cut(s)	428, 557, 1006, 1230
BssT1I	CCWWGG	4 cut(s)	33, 573, 751, 1128
Bst2UI	CCWGG	4 cut(s)	63, 363, 643, 1290
Bst4CI	ACNGT	6 cut(s)	156, 172, 505, 623, 1022, 1189
Bst6I	CTCTTC	1 cut(s)	1099
BstAUI	TGTACA	1 cut(s)	687
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	1217
BstDEI	CTNAG	3 cut(s)	262, 494, 1092
BstDSI	CCRYGG	4 cut(s)	168, 573, 751, 1128
BstF5I	GGATG	1 cut(s)	1298
BstKTI	GATC	4 cut(s)	431, 560, 1009, 1233
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	4 cut(s)	428, 557, 1006, 1230
BstNI	CCWGG	4 cut(s)	63, 363, 643, 1290
BstNSI	RCATGY	2 cut(s)	1219, 1261
BstSCI	CCNGG	5 cut(s)	61, 361, 431, 641, 1288
BstV1I	GCAGC	2 cut(s)	187, 645
BstX2I	RGATCY	2 cut(s)	428, 557
BstYI	RGATCY	2 cut(s)	428, 557
BsuRI	GGCC	2 cut(s)	38, 1180
BtgI	CCRYGG	4 cut(s)	168, 573, 751, 1128
BtsCI	GGATG	1 cut(s)	1298
BtsI	GCAGTG	1 cut(s)	966
BtsIMutI	CAGTG	3 cut(s)	98, 966, 1018
Cac8I	GCNNGC	1 cut(s)	1217
CciI	TCATGA	2 cut(s)	870, 991
Cfr10I	RCCGGY	1 cut(s)	1176
Cfr13I	GGNCC	3 cut(s)	30, 358, 390
Csp6I	GTAC	4 cut(s)	407, 639, 688, 711
CviQI	GTAC	4 cut(s)	407, 639, 688, 711
DdeI	CTNAG	3 cut(s)	262, 494, 1092
DpnI	GATC	4 cut(s)	430, 559, 1008, 1232
DpnII	GATC	4 cut(s)	428, 557, 1006, 1230
Eam1104I	CTCTTC	1 cut(s)	1099
EarI	CTCTTC	1 cut(s)	1099
Eco130I	CCWWGG	4 cut(s)	33, 573, 751, 1128
Eco47I	GGWCC	3 cut(s)	30, 358, 390
Eco57I	CTGAAG	2 cut(s)	270, 795
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRI	GAATTC	1 cut(s)	866
EcoRII	CCWGG	4 cut(s)	61, 361, 641, 1288
EcoT14I	CCWWGG	4 cut(s)	33, 573, 751, 1128
EcoT22I	ATGCAT	1 cut(s)	801
ErhI	CCWWGG	4 cut(s)	33, 573, 751, 1128
FaqI	GGGAC	2 cut(s)	43, 79
Fnu4HI	GCNGC	2 cut(s)	176, 659
Fsp4HI	GCNGC	2 cut(s)	176, 659
FspBI	CTAG	4 cut(s)	453, 1088, 1143, 1226
GluI	GCNGC	2 cut(s)	176, 659
GsuI	CTGGAG	1 cut(s)	1143
HaeIII	GGCC	2 cut(s)	38, 1180
HapII	CCGG	3 cut(s)	432, 1034, 1177
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	2 cut(s)	128, 437
HpaII	CCGG	3 cut(s)	432, 1034, 1177
HphI	GGTGA	2 cut(s)	88, 1180
Hpy166II	GTNNAC	4 cut(s)	168, 292, 688, 781
Hpy188I	TCNGA	5 cut(s)	445, 495, 838, 1078, 1136
Hpy188III	TCNNGA	7 cut(s)	356, 565, 871, 918, 992, 1004, 1160
Hpy8I	GTNNAC	4 cut(s)	168, 292, 688, 781
HpyAV	CCTTC	3 cut(s)	159, 571, 754
HpyCH4III	ACNGT	6 cut(s)	156, 172, 505, 623, 1022, 1189
HpyCH4V	TGCA	7 cut(s)	175, 547, 704, 722, 799, 971, 983
HpyF3I	CTNAG	3 cut(s)	262, 494, 1092
KpnI	GGTACC	1 cut(s)	410
Kzo9I	GATC	4 cut(s)	428, 557, 1006, 1230
LmnI	GCTCC	4 cut(s)	333, 607, 839, 1162
Lsp1109I	GCAGC	2 cut(s)	187, 645
LweI	GCATC	1 cut(s)	808
MaeI	CTAG	4 cut(s)	453, 1088, 1143, 1226
MaeIII	GTNAC	6 cut(s)	224, 458, 617, 1022, 1123, 1172
MalI	GATC	4 cut(s)	430, 559, 1008, 1232
MboI	GATC	4 cut(s)	428, 557, 1006, 1230
MboII	GAAGA	4 cut(s)	132, 1116, 1257, 1273
MflI	RGATCY	2 cut(s)	428, 557
MhlI	GDGCHC	2 cut(s)	604, 1113
MluCI	AATT	8 cut(s)	184, 200, 217, 384, 610, 646, 866, 1057
MnlI	CCTC	9 cut(s)	80, 324, 406, 419, 527, 546, 916, 1130, 1139
Mph1103I	ATGCAT	1 cut(s)	801
MroXI	GAANNNNTTC	1 cut(s)	1041
MseI	TTAA	4 cut(s)	587, 726, 951, 1302
MslI	CAYNNNNRTG	1 cut(s)	959
MspA1I	CMGCKG	1 cut(s)	658
MspI	CCGG	3 cut(s)	432, 1034, 1177
MspR9I	CCNGG	5 cut(s)	63, 363, 433, 643, 1290
MvaI	CCWGG	4 cut(s)	63, 363, 643, 1290
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	3 cut(s)	573, 751, 1128
NdeII	GATC	4 cut(s)	428, 557, 1006, 1230
NlaIV	GGNNCC	5 cut(s)	31, 360, 408, 430, 1158
NmuCI	GTSAC	2 cut(s)	224, 1022
NsiI	ATGCAT	1 cut(s)	801
NspI	RCATGY	2 cut(s)	1219, 1261
NspV	TTCGAA	1 cut(s)	131
PaeI	GCATGC	1 cut(s)	1219
PagI	TCATGA	2 cut(s)	870, 991
PciI	ACATGT	1 cut(s)	1257
PdmI	GAANNNNTTC	1 cut(s)	1041
PfeI	GAWTC	2 cut(s)	128, 437
PfoI	TCCNGGA	1 cut(s)	1288
PkrI	GCNGC	2 cut(s)	177, 660
PpuMI	RGGWCCY	1 cut(s)	358
PscI	ACATGT	1 cut(s)	1257
PsiI	TTATAA	2 cut(s)	72, 770
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	4 cut(s)	61, 361, 641, 1288
PspGI	CCWGG	4 cut(s)	61, 361, 641, 1288
PspN4I	GGNNCC	5 cut(s)	31, 360, 408, 430, 1158
PspPI	GGNCC	3 cut(s)	30, 358, 390
PspPPI	RGGWCCY	1 cut(s)	358
PsuI	RGATCY	2 cut(s)	428, 557
PvuII	CAGCTG	1 cut(s)	658
RsaI	GTAC	4 cut(s)	408, 640, 689, 712
RsaNI	GTAC	4 cut(s)	407, 639, 688, 711
RseI	CAYNNNNRTG	1 cut(s)	959
SaqAI	TTAA	4 cut(s)	587, 726, 951, 1302
SatI	GCNGC	2 cut(s)	176, 659
Sau3AI	GATC	4 cut(s)	428, 557, 1006, 1230
Sau96I	GGNCC	3 cut(s)	30, 358, 390
ScrFI	CCNGG	5 cut(s)	63, 363, 433, 643, 1290
SduI	GDGCHC	2 cut(s)	604, 1113
SfaNI	GCATC	1 cut(s)	808
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	3 cut(s)	30, 358, 390
SmiMI	CAYNNNNRTG	1 cut(s)	959
SphI	GCATGC	1 cut(s)	1219
Sse9I	AATT	8 cut(s)	184, 200, 217, 384, 610, 646, 866, 1057
SspI	AATATT	2 cut(s)	914, 1042
SspMI	CTAG	4 cut(s)	453, 1088, 1143, 1226
StyD4I	CCNGG	5 cut(s)	61, 361, 431, 641, 1288
StyI	CCWWGG	4 cut(s)	33, 573, 751, 1128
TaaI	ACNGT	6 cut(s)	156, 172, 505, 623, 1022, 1189
TaqI	TCGA	4 cut(s)	131, 1003, 1009, 1243
TasI	AATT	8 cut(s)	184, 200, 217, 384, 610, 646, 866, 1057
TatI	WGTACW	1 cut(s)	687
TfiI	GAWTC	2 cut(s)	128, 437
Tru1I	TTAA	4 cut(s)	587, 726, 951, 1302
Tru9I	TTAA	4 cut(s)	587, 726, 951, 1302
TscAI	CASTG	3 cut(s)	98, 966, 1025
TseFI	GTSAC	2 cut(s)	224, 1022
TseI	GCWGC	2 cut(s)	175, 658
Tsp45I	GTSAC	2 cut(s)	224, 1022
TspDTI	ATGAA	9 cut(s)	321, 429, 623, 821, 859, 879, 887, 980, 1068
TspRI	CASTG	3 cut(s)	98, 966, 1025
VpaK11BI	GGWCC	3 cut(s)	30, 358, 390
XapI	RAATTY	5 cut(s)	200, 610, 646, 866, 1057
XceI	RCATGY	2 cut(s)	1219, 1261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmnI	GAANNNNTTC	1 cut(s)	1041
XspI	CTAG	4 cut(s)	453, 1088, 1143, 1226
Zsp2I	ATGCAT	1 cut(s)	801

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.