Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007255

Physical Location & Seq

Genomic Coordinates Forward (+)

25909006 .. 25910141

Gene Structure 1136 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCATCACATGAACTTGGTTCGTCTATGCGGGTACTGCTCCGAGAGCTCACAACGGCTTTTAGTTTATGAGTTCATGAAAAATGGGTCTCTGGACAAATGGATATTTCGCTCAAATTATTCCCGAGACAAGTTGCTAGATTGGCAATCACGGTTTGATATAGCCGTGGGTACTGCACAAGGGATTGCATATTTTCATGAGCAATGCCGAGATCGAATTATACATTGTGACATCAAACCAGAAAACATTCTGCTAGATGAAAATTTCTGTCCTAAAGTTTCCGATTTTGGACTAGCTAAGTTGATGGGAAGAGAGCACTCACAGGTTGTTACCATGGTCAGAGGAACAAGAGGCTATTTGGCTCCAGAGTGGGTGAGTAACCGGCCTATAACTGTTAAGGCTGATGTTTATAGTTACGGCATGCTTCTTCTAGAGATCGTTGGCGGTCGAAGAAACCTTGACATGTCATTTGATGCAGATGACTTTTTCTATCCTGGATGGGCTTTTAAGGAGATGACAAGTGGAAATCCCATGAAAGTTGCAGACAGGAGACTCGAAGGAGCGGTGGAAGAAGAAGAACTCATTAGAGCCTTGAAAGTTGCCTTTTGGTGCATCCAAGATGAGATATTCATGAGACCAACAATGGGGGAAGTAGTGAGAACGTTGGAAGGATCAGTCGGCATCAACATGCCACCGATGCCCCAAACGGTTTTGGAGTTAATTGAGGAAGGCCTGGATCATGTGTACAAGGCAATGAAGAGAGAATTCAATCACTTCAGCTCCTTCACCATCAATACCCATCCTTCTTCATCTCAAGCTACATGCAGTTACTCCACAATGTCCCCTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

284

Amino Acids

32.57

Weight (kDa)

5.93

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 154	1.8e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 221	7.4e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24080 AT5G24080 AT5G24080
fragaria_vesca	FvH4_7g30670 FvH4_7g30670
malus_domestica	MD01G1211900.v1.1 MD07G1282400.v1.1
prunus_persica	Prupe.2G304500_v2.0.a1 Prupe.2G304500_v2.0.a1
pyrus_communis	pycom01g22230 pycom07g25630 pycom07g25640
rosa_chinensis	RchiOBHm_Chr1g0379601
rosa_laevigata	RLG00000026391
rosa_multiflora	Rmu_co8451749.1_g000001 Rmu_sc0011286.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280050
rosa_rugosa	Rorug01G0413200 Rorug01G0413300 Rorug01G0413400
rosa_samantha	Rh1AG436400 Rh1BG393400 Rh1CG406200 Rh1DG424300
rosa_wichuraiana	Rw1G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	563
AciI	CCGC	3 cut(s)	30, 444, 563
AclI	AACGTT	1 cut(s)	662
AclWI	GGATC	2 cut(s)	679, 744
AcsI	RAATTY	2 cut(s)	262, 764
AcuI	CTGAAG	1 cut(s)	760
AfaI	GTAC	3 cut(s)	35, 172, 746
AfiI	CCNNNNNNNGG	1 cut(s)	644
AflIII	ACRYGT	1 cut(s)	462
AgsI	TTSAA	2 cut(s)	595, 769
AjnI	CCWGG	2 cut(s)	493, 732
AluBI	AGCT	4 cut(s)	48, 296, 780, 818
AluI	AGCT	4 cut(s)	48, 296, 780, 818
Alw21I	GWGCWC	2 cut(s)	50, 318
Alw26I	GTCTC	4 cut(s)	93, 120, 544, 628
AlwI	GGATC	2 cut(s)	679, 744
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	2 cut(s)	383, 730
ApoI	RAATTY	2 cut(s)	262, 764
ArsI	GACNNNNNNTTYG	2 cut(s)	452, 484
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	385, 778
AvaI	CYCGRG	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	50, 318
BccI	CCATC	4 cut(s)	298, 492, 797, 807
BceAI	ACGGC	3 cut(s)	71, 149, 433
BciT130I	CCWGG	2 cut(s)	495, 734
BcoDI	GTCTC	4 cut(s)	93, 120, 544, 628
BfaI	CTAG	5 cut(s)	137, 254, 293, 431, 846
Bme1390I	CCNGG	2 cut(s)	495, 734
BmeT110I	CYCGRG	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	2 cut(s)	495, 734
BmsI	GCATC	5 cut(s)	13, 463, 621, 687, 690
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	798
BsaI	GGTCTC	2 cut(s)	93, 628
BsaJI	CCNNGG	2 cut(s)	165, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	764, 794
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse118I	RCCGGY	1 cut(s)	381
Bse3DI	GCAATG	2 cut(s)	209, 759
BseBI	CCWGG	2 cut(s)	495, 734
BseDI	CCNNGG	2 cut(s)	165, 333
BseGI	GGATG	3 cut(s)	503, 612, 799
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	2 cut(s)	209, 759
BsgI	GTGCAG	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	2 cut(s)	385, 732
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	2 cut(s)	50, 318
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmAI	GTCTC	4 cut(s)	93, 120, 544, 628
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	2 cut(s)	385, 732
Bso31I	GGTCTC	2 cut(s)	93, 628
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	50, 318
Bsp1407I	TGTACA	1 cut(s)	744
Bsp143I	GATC	4 cut(s)	211, 435, 671, 736
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	3 cut(s)	30, 444, 563
BspANI	GGCC	2 cut(s)	385, 732
BspHI	TCATGA	3 cut(s)	75, 196, 630
BspLI	GGNNCC	1 cut(s)	363
BspPI	GGATC	2 cut(s)	679, 744
BspTNI	GGTCTC	2 cut(s)	93, 628
BsrBI	CCGCTC	1 cut(s)	563
BsrDI	GCAATG	2 cut(s)	209, 759
BsrFI	RCCGGY	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	744
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	165, 333
BssMI	GATC	4 cut(s)	211, 435, 671, 736
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	2 cut(s)	495, 734
Bst4CI	ACNGT	3 cut(s)	153, 394, 709
Bst6I	CTCTTC	2 cut(s)	304, 752
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	1 cut(s)	297
BstDSI	CCRYGG	2 cut(s)	165, 333
BstF5I	GGATG	3 cut(s)	503, 612, 799
BstKTI	GATC	4 cut(s)	214, 438, 674, 739
BstMAI	GTCTC	4 cut(s)	93, 120, 544, 628
BstMBI	GATC	4 cut(s)	211, 435, 671, 736
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 45, 142, 697
BstNI	CCWGG	2 cut(s)	495, 734
BstNSI	RCATGY	4 cut(s)	424, 466, 691, 825
BstSCI	CCNGG	2 cut(s)	493, 732
BsuRI	GGCC	2 cut(s)	385, 732
BtgI	CCRYGG	2 cut(s)	165, 333
BtsCI	GGATG	3 cut(s)	503, 612, 799
Cac8I	GCNNGC	1 cut(s)	422
CciI	TCATGA	3 cut(s)	75, 196, 630
Cfr10I	RCCGGY	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	34, 171, 745
CviQI	GTAC	3 cut(s)	34, 171, 745
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	4 cut(s)	213, 437, 673, 738
DpnII	GATC	4 cut(s)	211, 435, 671, 736
Eam1104I	CTCTTC	2 cut(s)	304, 752
EarI	CTCTTC	2 cut(s)	304, 752
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	50
Eco31I	GGTCTC	2 cut(s)	93, 628
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	764
EcoRII	CCWGG	2 cut(s)	493, 732
EcoT14I	CCWWGG	1 cut(s)	333
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	333
FaqI	GGGAC	1 cut(s)	826
FauI	CCCGC	1 cut(s)	23
FokI	GGATG	3 cut(s)	510, 599, 786
FriOI	GRGCYC	1 cut(s)	50
FspBI	CTAG	5 cut(s)	137, 254, 293, 431, 846
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	385, 732
HapII	CCGG	1 cut(s)	382
HinfI	GANTC	1 cut(s)	552
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	385, 778
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	3 cut(s)	43, 283, 341
Hpy188III	TCNNGA	7 cut(s)	76, 92, 123, 197, 365, 431, 631
Hpy8I	GTNNAC	1 cut(s)	745
HpyAV	CCTTC	5 cut(s)	551, 662, 722, 793, 813
HpyCH4III	ACNGT	3 cut(s)	153, 394, 709
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	7 cut(s)	4, 176, 188, 476, 542, 612, 825
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 45, 142, 697
HpyF3I	CTNAG	1 cut(s)	297
HpySE526I	ACGT	1 cut(s)	662
Kzo9I	GATC	4 cut(s)	211, 435, 671, 736
LmnI	GCTCC	4 cut(s)	44, 367, 560, 785
LweI	GCATC	5 cut(s)	13, 463, 621, 687, 690
MaeI	CTAG	5 cut(s)	137, 254, 293, 431, 846
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	5 cut(s)	227, 328, 377, 413, 827
MalI	GATC	4 cut(s)	213, 437, 673, 738
MbiI	CCGCTC	1 cut(s)	563
MboI	GATC	4 cut(s)	211, 435, 671, 736
MboII	GAAGA	8 cut(s)	321, 419, 462, 581, 584, 587, 769, 798
MhlI	GDGCHC	2 cut(s)	50, 318
MluCI	AATT	5 cut(s)	115, 216, 262, 720, 764
MlyI	GAGTC	1 cut(s)	546
MmeI	TCCRAC	1 cut(s)	645
MnlI	CCTC	3 cut(s)	335, 344, 718
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	3 cut(s)	396, 507, 719
MslI	CAYNNNNRTG	1 cut(s)	686
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	495, 734
MvaI	CCWGG	2 cut(s)	495, 734
MwoI	GCNNNNNNNGC	4 cut(s)	36, 45, 142, 697
NcoI	CCATGG	1 cut(s)	333
NdeII	GATC	4 cut(s)	211, 435, 671, 736
NlaIV	GGNNCC	1 cut(s)	363
NmeAIII	GCCGAG	1 cut(s)	233
NmuCI	GTSAC	1 cut(s)	227
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	424, 466, 691, 825
PaeI	GCATGC	1 cut(s)	424
PagI	TCATGA	3 cut(s)	75, 196, 630
PceI	AGGCCT	1 cut(s)	732
PciI	ACATGT	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	246
PfoI	TCCNGGA	1 cut(s)	493
PleI	GAGTC	1 cut(s)	546
PpsI	GAGTC	1 cut(s)	546
PscI	ACATGT	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	662
Psp6I	CCWGG	2 cut(s)	493, 732
PspGI	CCWGG	2 cut(s)	493, 732
PspN4I	GGNNCC	1 cut(s)	363
RsaI	GTAC	3 cut(s)	35, 172, 746
RsaNI	GTAC	3 cut(s)	34, 171, 745
RseI	CAYNNNNRTG	1 cut(s)	686
SacI	GAGCTC	1 cut(s)	50
SaqAI	TTAA	3 cut(s)	396, 507, 719
Sau3AI	GATC	4 cut(s)	211, 435, 671, 736
SchI	GAGTC	1 cut(s)	546
ScrFI	CCNGG	2 cut(s)	495, 734
SduI	GDGCHC	2 cut(s)	50, 318
SetI	ASST	7 cut(s)	50, 298, 327, 459, 665, 782, 820
SfaNI	GCATC	5 cut(s)	13, 463, 621, 687, 690
SmiMI	CAYNNNNRTG	1 cut(s)	686
SmlI	CTYRAG	1 cut(s)	813
SmoI	CTYRAG	1 cut(s)	813
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	5 cut(s)	115, 216, 262, 720, 764
SseBI	AGGCCT	1 cut(s)	732
SsiI	CCGC	3 cut(s)	30, 444, 563
SspMI	CTAG	5 cut(s)	137, 254, 293, 431, 846
SstI	GAGCTC	1 cut(s)	50
StuI	AGGCCT	1 cut(s)	732
StyD4I	CCNGG	2 cut(s)	493, 732
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	3 cut(s)	153, 394, 709
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	3 cut(s)	214, 448, 555
TasI	AATT	5 cut(s)	115, 216, 262, 720, 764
TatI	WGTACW	1 cut(s)	744
Tru1I	TTAA	3 cut(s)	396, 507, 719
Tru9I	TTAA	3 cut(s)	396, 507, 719
TseFI	GTSAC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	9 cut(s)	26, 64, 92, 185, 273, 548, 619, 770, 798
XapI	RAATTY	2 cut(s)	262, 764
XbaI	TCTAGA	1 cut(s)	430
XceI	RCATGY	4 cut(s)	424, 466, 691, 825
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	5 cut(s)	137, 254, 293, 431, 846
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.