Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011286.1

Orthogroup ID

OG0007255

Physical Location & Seq

Genomic Coordinates Forward (+)

22633 .. 24223

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011286.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggcctctagtagttacttggtgttgttcttcttcttggttctagctgggtttggtgcctgcatggctaaccagattagtttgggttcgaggttgatggctaaagagaaccagacggtggtttctgataatggtacatttgcacttgggttcagtccaatggatgaagataacagatatcaactggcaatttggtttgcagagcttcctggagacagaaccatagtatggtctgctaatagaaattctgctgtcaccaacaatgcaatcctggagctagagaccaccggaaaccttgttctcatggatggtgatgctactatttggacctccaacacttcaggcaccagcgttgaatttgcatccctattagaatctggaaacttcatcttatacaatgaagccaaccgccctatgtggcagagtttctcacatccatctgatactctcctcccaaaccagcctctttcggtctctttagagctcacaacagctaagtcaccctctcatggtggctattatgctctcaaaatgcttcagcagcgcacttcgttaagccttgcattgacttataatatgccagaaagtacttacaatacctcaccagaatcttactataacaactcgtactggactggaccggagatatcaaatgtgacaggagatgtcatagcggttttggatgaagcaggaagctttggaattgtgtacggtgaatcttcagatggagctgtatatgtgtacaagaatgatggtgatgatggagtactatcagcagcctctaacaaatcaaacagattgtcagttcttcggagattgacactcgaaactaatggaaatttgcgtttgtatcgttgggatgat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin Pkinase S_locus_glycop

Protein Analysis

288

Amino Acids

31.58

Weight (kDa)

4.47

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24080 AT5G24080 AT5G24080
fragaria_vesca	FvH4_7g30670 FvH4_7g30670
malus_domestica	MD01G1211900.v1.1 MD07G1282400.v1.1
prunus_persica	Prupe.2G304500_v2.0.a1 Prupe.2G304500_v2.0.a1
pyrus_communis	pycom01g22230 pycom07g25630 pycom07g25640
rosa_chinensis	RchiOBHm_Chr1g0379601
rosa_laevigata	RLG00000026391
rosa_multiflora	Rmu_co8451749.1_g000001 Rmu_sc0011286.1_g000005
rosa_roxburghii	Rroxscaffold_4G00280050
rosa_rugosa	Rorug01G0413200 Rorug01G0413300 Rorug01G0413400
rosa_samantha	Rh1AG436400 Rh1BG393400 Rh1CG406200 Rh1DG424300
rosa_wichuraiana	Rw1G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
AccB1I	GGYRCC	2 cut(s)	56, 344
AccB7I	CCANNNNNTGG	2 cut(s)	118, 228
AciI	CCGC	2 cut(s)	409, 674
AcsI	RAATTY	3 cut(s)	244, 356, 838
AcuI	CTGAAG	3 cut(s)	324, 521, 705
AfaI	GTAC	6 cut(s)	136, 589, 629, 710, 743, 768
AfiI	CCNNNNNNNGG	3 cut(s)	118, 228, 509
AgsI	TTSAA	1 cut(s)	356
AjnI	CCWGG	2 cut(s)	208, 270
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	7 cut(s)	47, 205, 277, 484, 494, 696, 731
AluI	AGCT	7 cut(s)	47, 205, 277, 484, 494, 696, 731
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	3 cut(s)	207, 275, 478
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	541, 776
ApoI	RAATTY	3 cut(s)	244, 356, 838
ArsI	GACNNNNNNTTYG	2 cut(s)	785, 817
AspLEI	GCGC	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	327, 638
AsuHPI	GGTGA	6 cut(s)	247, 323, 492, 594, 725, 767
AvaII	GGWCC	2 cut(s)	327, 638
BanI	GGYRCC	2 cut(s)	56, 344
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	553, 788
BccI	CCATC	6 cut(s)	91, 302, 445, 719, 746, 755
BciT130I	CCWGG	2 cut(s)	210, 272
BcoDI	GTCTC	3 cut(s)	207, 275, 478
BfaI	CTAG	3 cut(s)	9, 44, 278
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	542, 777
BlsI	GCNGC	2 cut(s)	543, 778
BmcAI	AGTACT	2 cut(s)	589, 768
Bme1390I	CCNGG	2 cut(s)	210, 272
Bme18I	GGWCC	2 cut(s)	327, 638
BmgT120I	GGNCC	2 cut(s)	327, 638
BmiI	GGNNCC	2 cut(s)	58, 346
BmrFI	CCNGG	2 cut(s)	210, 272
BmsI	GCATC	2 cut(s)	304, 371
BpmI	CTGGAG	2 cut(s)	231, 293
BsaI	GGTCTC	2 cut(s)	275, 478
BsaWI	WCCGGW	2 cut(s)	287, 640
Bsc4I	CCNNNNNNNGG	3 cut(s)	118, 228, 509
Bse1I	ACTGG	3 cut(s)	189, 635, 640
BseBI	CCWGG	2 cut(s)	210, 272
BseGI	GGATG	5 cut(s)	169, 313, 362, 433, 688
BseLI	CCNNNNNNNGG	3 cut(s)	118, 228, 509
BseNI	ACTGG	3 cut(s)	189, 635, 640
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	553, 788
BseYI	CCCAGC	1 cut(s)	47
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	56, 344
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	288, 641
BslI	CCNNNNNNNGG	3 cut(s)	118, 228, 509
BsmAI	GTCTC	3 cut(s)	207, 275, 478
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	275, 478
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp1407I	TGTACA	1 cut(s)	741
BspACI	CCGC	2 cut(s)	409, 674
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	58, 346
BspT107I	GGYRCC	2 cut(s)	56, 344
BspTNI	GGTCTC	2 cut(s)	275, 478
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	3 cut(s)	189, 635, 640
Bst2UI	CCWGG	2 cut(s)	210, 272
Bst4CI	ACNGT	2 cut(s)	118, 713
BstAUI	TGTACA	1 cut(s)	741
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	5 cut(s)	169, 313, 362, 433, 688
BstHHI	GCGC	1 cut(s)	546
BstMAI	GTCTC	3 cut(s)	207, 275, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 541
BstNI	CCWGG	2 cut(s)	210, 272
BstSCI	CCNGG	2 cut(s)	208, 270
BstV1I	GCAGC	2 cut(s)	553, 788
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	5 cut(s)	169, 313, 362, 433, 688
Cac8I	GCNNGC	1 cut(s)	61
CfoI	GCGC	1 cut(s)	546
Cfr13I	GGNCC	2 cut(s)	327, 638
Csp6I	GTAC	6 cut(s)	135, 588, 628, 709, 742, 767
CviAII	CATG	3 cut(s)	64, 304, 509
CviQI	GTAC	6 cut(s)	135, 588, 628, 709, 742, 767
DdeI	CTNAG	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco31I	GGTCTC	2 cut(s)	275, 478
Eco32I	GATATC	2 cut(s)	179, 648
Eco47I	GGWCC	2 cut(s)	327, 638
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	3 cut(s)	324, 521, 705
EcoICRI	GAGCTC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	208, 270
EcoRV	GATATC	2 cut(s)	179, 648
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	3 cut(s)	67, 307, 512
FatI	CATG	3 cut(s)	63, 303, 508
Fnu4HI	GCNGC	2 cut(s)	542, 777
FokI	GGATG	5 cut(s)	176, 320, 349, 420, 695
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	542, 777
FspBI	CTAG	3 cut(s)	9, 44, 278
GlaI	GCGC	1 cut(s)	545
GluI	GCNGC	2 cut(s)	542, 777
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	231, 293
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	288, 641
HhaI	GCGC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	67, 307, 512
Hin6I	GCGC	1 cut(s)	544
HinP1I	GCGC	1 cut(s)	544
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	3 cut(s)	374, 608, 716
HpaII	CCGG	2 cut(s)	288, 641
HphI	GGTGA	6 cut(s)	247, 323, 492, 594, 725, 767
Hpy166II	GTNNAC	2 cut(s)	709, 742
Hpy188I	TCNGA	4 cut(s)	127, 442, 724, 813
Hpy188III	TCNNGA	1 cut(s)	378
Hpy8I	GTNNAC	2 cut(s)	709, 742
HpyCH4III	ACNGT	2 cut(s)	118, 713
HpyCH4V	TGCA	6 cut(s)	63, 143, 200, 266, 362, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 541
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	67, 307, 512
HspAI	GCGC	1 cut(s)	544
LmnI	GCTCC	2 cut(s)	274, 728
Lsp1109I	GCAGC	2 cut(s)	553, 788
LweI	GCATC	2 cut(s)	304, 371
MaeI	CTAG	3 cut(s)	9, 44, 278
MaeIII	GTNAC	4 cut(s)	14, 253, 498, 655
MboII	GAAGA	5 cut(s)	22, 25, 179, 711, 800
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	5 cut(s)	189, 244, 356, 702, 838
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	16, 84, 340, 461, 474, 514, 610, 790
MseI	TTAA	1 cut(s)	554
MspI	CCGG	2 cut(s)	288, 641
MspR9I	CCNGG	2 cut(s)	210, 272
MvaI	CCWGG	2 cut(s)	210, 272
MwoI	GCNNNNNNNGC	2 cut(s)	65, 541
NlaIII	CATG	3 cut(s)	67, 307, 512
NlaIV	GGNNCC	2 cut(s)	58, 346
NmuCI	GTSAC	3 cut(s)	253, 498, 655
PfeI	GAWTC	3 cut(s)	374, 608, 716
PflMI	CCANNNNNTGG	2 cut(s)	118, 228
PfoI	TCCNGGA	2 cut(s)	208, 270
PkrI	GCNGC	2 cut(s)	543, 778
PsiI	TTATAA	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	208, 270
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	2 cut(s)	208, 270
PspN4I	GGNNCC	2 cut(s)	58, 346
PspPI	GGNCC	2 cut(s)	327, 638
RsaI	GTAC	6 cut(s)	136, 589, 629, 710, 743, 768
RsaNI	GTAC	6 cut(s)	135, 588, 628, 709, 742, 767
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	554
SatI	GCNGC	2 cut(s)	542, 777
Sau96I	GGNCC	2 cut(s)	327, 638
ScaI	AGTACT	2 cut(s)	589, 768
ScrFI	CCNGG	2 cut(s)	210, 272
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	304, 371
SinI	GGWCC	2 cut(s)	327, 638
Sse9I	AATT	5 cut(s)	189, 244, 356, 702, 838
SsiI	CCGC	2 cut(s)	409, 674
SspMI	CTAG	3 cut(s)	9, 44, 278
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	208, 270
TaaI	ACNGT	2 cut(s)	118, 713
TaqI	TCGA	2 cut(s)	89, 825
TaqII	GACCGA	1 cut(s)	460
TasI	AATT	5 cut(s)	189, 244, 356, 702, 838
TatI	WGTACW	3 cut(s)	587, 741, 766
TfiI	GAWTC	3 cut(s)	374, 608, 716
Tru1I	TTAA	1 cut(s)	554
Tru9I	TTAA	1 cut(s)	554
TseFI	GTSAC	3 cut(s)	253, 498, 655
TseI	GCWGC	2 cut(s)	541, 776
Tsp45I	GTSAC	3 cut(s)	253, 498, 655
TspDTI	ATGAA	4 cut(s)	180, 376, 414, 699
Van91I	CCANNNNNTGG	2 cut(s)	118, 228
VpaK11BI	GGWCC	2 cut(s)	327, 638
XapI	RAATTY	3 cut(s)	244, 356, 838
XspI	CTAG	3 cut(s)	9, 44, 278
ZrmI	AGTACT	2 cut(s)	589, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.