Rh1CG406200

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Forward (+)
67147812 .. 67150174
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG406200.1

Sequence Viewer

Length: 1629 bp
ATGGCCTCTAGTAGTTACTTGGTGTTGTTCTTCTTCTTGGTTCTAGCTGGGTTTGGTGCCTGCATGGCTAGCCAGATTAGTCTGGGTTCGAGGTTGATGGCTAAAGAGAACCAGACGGTGGTTTCTGATAATGGTACATTTGCACTTGGGTTCAGTCCAATGGATGAAGATAACAGATATCAACTGGCAATTTGGTTTGCAGAGCTTCCTGGAGACAGAACCATAGTATGGTCTGCTAATAGAAATTCTGCTGTCACCAACAATGCAATCCTGGTGCTAGAGATCACCGGAAACCTTGTTCTCATGGATGGTGATGTTACTATTTGGACCTCCAACACTTCAGGCACCGGCGTTGAATTTGCATCCCTATTAGAATCTGGAAACTTCATCTTATACAATGAAGCCAACCGCCCTATGTGGCAGAGTTTCTCACATCCATCTGATACTCTCCTCCCAAACCAGCCTCTTTCGGTCTCTTTAGAGCTCACAACAGCTAAGTCACCCTCTCATGGTGGCTATTATGCTCTCAAAATGCTTCAACAGCGCACTTCGTTAAGCCTTGCATTGACTTATAATATGCCAGAAAGTACTTACAATACCTCACCAGAATCTTACTATAACAACTCTTACTGGACTGGACCGGAGATATCAAATGTGACAGGAGATGTCATAGCGGTTTTGGATGAAGCAGGAAGCTTTGGAATTGTGTACGGTGAGTCTTCAGATGGAGCTGTATATGTGTACAAGAATGATGGTGATGATGGAGGACTATCAGCAGCCTCAAACAAATCAAACAGATTGTCAGTTCTTCGGAGATTGACACTCGAAACTAATGGAAATTTGCGTTTGTATCGTTGGGATGATGATGTCAATGGGTCAAGGCAATGGGTGTCAGAGTGGGCTGCAGTTTCAACACCATGTGACATTTCTGGAATTTGTGGTAATGGGATTTGTACTTTAGATAGGACCAAGGCCAATGCTTCTTGCTCATGTCTGCCAGGGACTTATAAGGTGAATAGTGGAGGTCAGTGTTCAGAGAACTCATCATTGATTGGAAGATGTGATTCGAAGCAGGATTATCAACCTTCACAGTTTAGAATGTCCACGGTGCAGCAAACCAATTACTATTTGCCAAAATTTTCAGTCATAGCAAATTATAGTGACATTGAAAATGTATCAAAATGTGGAGATGTTTGCTTAGCTGATTGTGAATGTGTTGCTTCAGTTTATGGGCTTGATGATGAAAATGCTTACTGTTGGGTTTTGAGGAGCATGGAGTTTGGTGGCTTTCAGGACCCTGGCTCAACCTTGTTTGTCAAAATTAGGTCCAATGGCTCGGTGGTACCAGAGGGAGATACAAGAGGATCGGGGGATTCATCAGATGGGTCTAGTAGTAACAGAGAAAAGGTTTTGGTTATACCTATTGTTCTGATCATGACTGTTCTTATAGCCCTCCTATGTCTCTTACTATATTACAATGTGCATAAGAGGAGATCCTTCAAGAGAGCCATGGAGAAGTCTTTAATCTTGTCTGGTGCTCCAATGAATTTTAGTTACCGTGATTTACAAGTTCGTACCTGGAATTTTTCACAGCTGCTTGGAACTGGTAAGTATGGACTACAATGCTAA

Protein Analysis

542

Amino Acids

59.32

Weight (kDa)

4.88

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 74 - 161 1.7e-18 D-mannose binding lectin
S_locus_glycop PF00954 258 - 334 5.8e-09 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 573, 1008
Acc65I GGTACC 1 cut(s) 1342
AccB1I GGYRCC 3 cut(s) 56, 344, 1342
AccB7I CCANNNNNTGG 2 cut(s) 118, 228
AciI CCGC 2 cut(s) 409, 674
AclWI GGATC 2 cut(s) 1372, 1488
AcsI RAATTY 7 cut(s) 244, 356, 838, 933, 1136, 1546, 1582
AcuI CTGAAG 3 cut(s) 324, 705, 1206
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 7 cut(s) 136, 589, 710, 743, 955, 1344, 1576
AfiI CCNNNNNNNGG 3 cut(s) 118, 228, 509
AgsI TTSAA 5 cut(s) 356, 539, 912, 1169, 1501
AjnI CCWGG 5 cut(s) 208, 270, 997, 1297, 1577
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 8 cut(s) 47, 205, 484, 494, 696, 731, 1202, 1594
AluI AGCT 8 cut(s) 47, 205, 484, 494, 696, 731, 1202, 1594
Alw21I GWGCWC 2 cut(s) 486, 1540
Alw26I GTCTC 3 cut(s) 207, 478, 1466
AlwI GGATC 2 cut(s) 1372, 1488
AoxI GGCC 2 cut(s) 3, 972
ApeKI GCWGC 4 cut(s) 776, 902, 1111, 1594
ApoI RAATTY 7 cut(s) 244, 356, 838, 933, 1136, 1546, 1582
ArsI GACNNNNNNTTYG 2 cut(s) 785, 817
Asp718I GGTACC 1 cut(s) 1342
AspLEI GCGC 1 cut(s) 546
AspS9I GGNCC 5 cut(s) 327, 638, 966, 1294, 1326
AsuHPI GGTGA 8 cut(s) 247, 277, 323, 492, 594, 725, 767, 1024
AsuII TTCGAA 1 cut(s) 1067
AsuNHI GCTAGC 1 cut(s) 68
AvaII GGWCC 5 cut(s) 327, 638, 966, 1294, 1326
BanI GGYRCC 3 cut(s) 56, 344, 1342
BanII GRGCYC 1 cut(s) 486
BbsI GAAGAC 1 cut(s) 711
Bbv12I GWGCWC 2 cut(s) 486, 1540
BbvI GCAGC 4 cut(s) 788, 889, 1123, 1581
BccI CCATC 7 cut(s) 91, 302, 445, 719, 746, 755, 1376
BciT130I CCWGG 5 cut(s) 210, 272, 999, 1299, 1579
BclI TGATCA 1 cut(s) 1431
BcoDI GTCTC 3 cut(s) 207, 478, 1466
BfaI CTAG 5 cut(s) 9, 44, 69, 278, 1389
BfmI CTRYAG 1 cut(s) 903
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 4 cut(s) 777, 903, 1112, 1595
BlpI GCTNAGC 1 cut(s) 1198
BlsI GCNGC 4 cut(s) 778, 904, 1113, 1596
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 5 cut(s) 210, 272, 999, 1299, 1579
Bme18I GGWCC 5 cut(s) 327, 638, 966, 1294, 1326
BmgT120I GGNCC 5 cut(s) 327, 638, 966, 1294, 1326
BmiI GGNNCC 4 cut(s) 58, 346, 1296, 1344
BmrFI CCNGG 5 cut(s) 210, 272, 999, 1299, 1579
BmsI GCATC 1 cut(s) 371
BmtI GCTAGC 1 cut(s) 72
BpiI GAAGAC 1 cut(s) 711
BpmI CTGGAG 1 cut(s) 231
Bpu1102I GCTNAGC 1 cut(s) 1198
Bpu14I TTCGAA 1 cut(s) 1067
BsaI GGTCTC 1 cut(s) 478
BsaJI CCNNGG 5 cut(s) 969, 998, 1104, 1297, 1509
BsaWI WCCGGW 2 cut(s) 287, 640
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 228, 509
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 4 cut(s) 189, 635, 640, 1609
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 5 cut(s) 210, 272, 999, 1299, 1579
BseDI CCNNGG 5 cut(s) 969, 998, 1104, 1297, 1509
BseGI GGATG 6 cut(s) 169, 313, 362, 433, 688, 865
BseLI CCNNNNNNNGG 3 cut(s) 118, 228, 509
BseMI GCAATG 1 cut(s) 890
BseNI ACTGG 4 cut(s) 189, 635, 640, 1609
BseRI GAGGAG 3 cut(s) 440, 1282, 1504
BseXI GCAGC 4 cut(s) 788, 889, 1123, 1581
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 1130
BshFI GGCC 2 cut(s) 5, 974
BshNI GGYRCC 3 cut(s) 56, 344, 1342
BsiHKAI GWGCWC 2 cut(s) 486, 1540
BsiSI CCGG 3 cut(s) 288, 348, 641
BslFI GGGAC 1 cut(s) 1015
BslI CCNNNNNNNGG 3 cut(s) 118, 228, 509
BsmAI GTCTC 3 cut(s) 207, 478, 1466
BsmFI GGGAC 1 cut(s) 1015
BsnI GGCC 2 cut(s) 5, 974
Bso31I GGTCTC 1 cut(s) 478
Bsp119I TTCGAA 1 cut(s) 1067
Bsp1286I GDGCHC 2 cut(s) 486, 1540
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 4 cut(s) 282, 1364, 1431, 1493
Bsp1720I GCTNAGC 1 cut(s) 1198
Bsp19I CCATGG 1 cut(s) 1509
BspACI CCGC 2 cut(s) 409, 674
BspANI GGCC 2 cut(s) 5, 974
BspHI TCATGA 1 cut(s) 1434
BspLI GGNNCC 4 cut(s) 58, 346, 1296, 1344
BspMAI CTGCAG 1 cut(s) 907
BspOI GCTAGC 1 cut(s) 72
BspPI GGATC 2 cut(s) 1372, 1488
BspT104I TTCGAA 1 cut(s) 1067
BspT107I GGYRCC 3 cut(s) 56, 344, 1342
BspTNI GGTCTC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 890
BsrFI RCCGGY 1 cut(s) 347
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 4 cut(s) 189, 635, 640, 1609
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 5 cut(s) 969, 998, 1104, 1297, 1509
BssMI GATC 4 cut(s) 282, 1364, 1431, 1493
BssT1I CCWWGG 2 cut(s) 969, 1509
Bst2UI CCWGG 5 cut(s) 210, 272, 999, 1299, 1579
Bst4CI ACNGT 7 cut(s) 118, 713, 1092, 1108, 1256, 1441, 1559
BstAUI TGTACA 1 cut(s) 741
BstBI TTCGAA 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 61, 70
BstDEI CTNAG 2 cut(s) 495, 1198
BstDSI CCRYGG 2 cut(s) 1104, 1509
BstF5I GGATG 6 cut(s) 169, 313, 362, 433, 688, 865
BstHHI GCGC 1 cut(s) 546
BstKTI GATC 4 cut(s) 285, 1367, 1434, 1496
BstMAI GTCTC 3 cut(s) 207, 478, 1466
BstMBI GATC 4 cut(s) 282, 1364, 1431, 1493
BstMWI GCNNNNNNNGC 3 cut(s) 65, 69, 541
BstNI CCWGG 5 cut(s) 210, 272, 999, 1299, 1579
BstSCI CCNGG 5 cut(s) 208, 270, 997, 1297, 1577
BstSFI CTRYAG 1 cut(s) 903
BstV1I GCAGC 4 cut(s) 788, 889, 1123, 1581
BstV2I GAAGAC 1 cut(s) 711
BstX2I RGATCY 1 cut(s) 1493
BstYI RGATCY 1 cut(s) 1493
BsuRI GGCC 2 cut(s) 5, 974
BtgI CCRYGG 2 cut(s) 1104, 1509
BtsCI GGATG 6 cut(s) 169, 313, 362, 433, 688, 865
BtsIMutI CAGTG 1 cut(s) 1034
Cac8I GCNNGC 2 cut(s) 61, 70
CciI TCATGA 1 cut(s) 1434
CfoI GCGC 1 cut(s) 546
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 5 cut(s) 327, 638, 966, 1294, 1326
Csp6I GTAC 7 cut(s) 135, 588, 709, 742, 954, 1343, 1575
CviAII CATG 8 cut(s) 64, 304, 509, 918, 990, 1273, 1435, 1510
CviQI GTAC 7 cut(s) 135, 588, 709, 742, 954, 1343, 1575
DdeI CTNAG 2 cut(s) 495, 1198
DpnI GATC 4 cut(s) 284, 1366, 1433, 1495
DpnII GATC 4 cut(s) 282, 1364, 1431, 1493
DraIII CACNNNGTG 1 cut(s) 920
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 969, 1509
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 478
Eco32I GATATC 2 cut(s) 179, 648
Eco47I GGWCC 5 cut(s) 327, 638, 966, 1294, 1326
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 3 cut(s) 324, 705, 1206
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 1294
EcoRII CCWGG 5 cut(s) 208, 270, 997, 1297, 1577
EcoRV GATATC 2 cut(s) 179, 648
EcoT14I CCWWGG 2 cut(s) 969, 1509
EcoT38I GRGCYC 1 cut(s) 486
ErhI CCWWGG 2 cut(s) 969, 1509
FaeI CATG 8 cut(s) 67, 307, 512, 921, 993, 1276, 1438, 1513
FaqI GGGAC 1 cut(s) 1015
FatI CATG 8 cut(s) 63, 303, 508, 917, 989, 1272, 1434, 1509
FbaI TGATCA 1 cut(s) 1431
Fnu4HI GCNGC 4 cut(s) 777, 903, 1112, 1595
FokI GGATG 6 cut(s) 176, 320, 349, 420, 695, 872
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 4 cut(s) 777, 903, 1112, 1595
FspBI CTAG 5 cut(s) 9, 44, 69, 278, 1389
GlaI GCGC 1 cut(s) 545
GluI GCNGC 4 cut(s) 777, 903, 1112, 1595
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 2 cut(s) 5, 974
HapII CCGG 3 cut(s) 288, 348, 641
HhaI GCGC 1 cut(s) 546
Hin1II CATG 8 cut(s) 67, 307, 512, 921, 993, 1276, 1438, 1513
Hin6I GCGC 1 cut(s) 544
HinP1I GCGC 1 cut(s) 544
HindIII AAGCTT 1 cut(s) 694
HinfI GANTC 5 cut(s) 374, 608, 716, 1064, 1373
HpaII CCGG 3 cut(s) 288, 348, 641
HphI GGTGA 8 cut(s) 247, 277, 323, 492, 594, 725, 767, 1024
Hpy166II GTNNAC 3 cut(s) 709, 742, 1104
Hpy188I TCNGA 8 cut(s) 127, 442, 724, 813, 895, 1036, 1381, 1431
Hpy188III TCNNGA 5 cut(s) 378, 930, 1292, 1435, 1501
Hpy8I GTNNAC 3 cut(s) 709, 742, 1104
HpyAV CCTTC 2 cut(s) 1095, 1507
HpyCH4III ACNGT 7 cut(s) 118, 713, 1092, 1108, 1256, 1441, 1559
HpyCH4V TGCA 9 cut(s) 63, 143, 200, 266, 362, 563, 905, 1111, 1483
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 69, 541
HpyF3I CTNAG 2 cut(s) 495, 1198
Hsp92II CATG 8 cut(s) 67, 307, 512, 921, 993, 1276, 1438, 1513
HspAI GCGC 1 cut(s) 544
KpnI GGTACC 1 cut(s) 1346
Ksp22I TGATCA 1 cut(s) 1431
Kzo9I GATC 4 cut(s) 282, 1364, 1431, 1493
LmnI GCTCC 3 cut(s) 728, 1269, 1543
Lsp1109I GCAGC 4 cut(s) 788, 889, 1123, 1581
LweI GCATC 1 cut(s) 371
MaeI CTAG 5 cut(s) 9, 44, 69, 278, 1389
MaeIII GTNAC 9 cut(s) 14, 253, 316, 498, 655, 920, 1160, 1394, 1553
MalI GATC 4 cut(s) 284, 1366, 1433, 1495
MboI GATC 4 cut(s) 282, 1364, 1431, 1493
MboII GAAGA 6 cut(s) 22, 25, 179, 711, 800, 1068
MflI RGATCY 1 cut(s) 1493
MhlI GDGCHC 2 cut(s) 486, 1540
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 1 cut(s) 357
MseI TTAA 2 cut(s) 554, 1523
MspA1I CMGCKG 1 cut(s) 1594
MspI CCGG 3 cut(s) 288, 348, 641
MspR9I CCNGG 5 cut(s) 210, 272, 999, 1299, 1579
MvaI CCWGG 5 cut(s) 210, 272, 999, 1299, 1579
MwoI GCNNNNNNNGC 3 cut(s) 65, 69, 541
NcoI CCATGG 1 cut(s) 1509
NdeII GATC 4 cut(s) 282, 1364, 1431, 1493
NheI GCTAGC 1 cut(s) 68
NlaIII CATG 8 cut(s) 67, 307, 512, 921, 993, 1276, 1438, 1513
NlaIV GGNNCC 4 cut(s) 58, 346, 1296, 1344
NmuCI GTSAC 5 cut(s) 253, 498, 655, 920, 1160
NspV TTCGAA 1 cut(s) 1067
PagI TCATGA 1 cut(s) 1434
PfeI GAWTC 4 cut(s) 374, 608, 1064, 1373
PflMI CCANNNNNTGG 2 cut(s) 118, 228
PfoI TCCNGGA 1 cut(s) 208
PkrI GCNGC 4 cut(s) 778, 904, 1113, 1596
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PpuMI RGGWCCY 1 cut(s) 1294
PsiI TTATAA 2 cut(s) 573, 1008
Psp124BI GAGCTC 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 1294
Psp6I CCWGG 5 cut(s) 208, 270, 997, 1297, 1577
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 5 cut(s) 208, 270, 997, 1297, 1577
PspN4I GGNNCC 4 cut(s) 58, 346, 1296, 1344
PspPI GGNCC 5 cut(s) 327, 638, 966, 1294, 1326
PspPPI RGGWCCY 1 cut(s) 1294
PstI CTGCAG 1 cut(s) 907
PsuI RGATCY 1 cut(s) 1493
PvuII CAGCTG 1 cut(s) 1594
RsaI GTAC 7 cut(s) 136, 589, 710, 743, 955, 1344, 1576
RsaNI GTAC 7 cut(s) 135, 588, 709, 742, 954, 1343, 1575
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 554, 1523
SatI GCNGC 4 cut(s) 777, 903, 1112, 1595
Sau3AI GATC 4 cut(s) 282, 1364, 1431, 1493
Sau96I GGNCC 5 cut(s) 327, 638, 966, 1294, 1326
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 5 cut(s) 210, 272, 999, 1299, 1579
SduI GDGCHC 2 cut(s) 486, 1540
SfaNI GCATC 1 cut(s) 371
SfcI CTRYAG 1 cut(s) 903
SfuI TTCGAA 1 cut(s) 1067
SgrAI CRCCGGYG 1 cut(s) 347
SinI GGWCC 5 cut(s) 327, 638, 966, 1294, 1326
SsiI CCGC 2 cut(s) 409, 674
SspMI CTAG 5 cut(s) 9, 44, 69, 278, 1389
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 5 cut(s) 208, 270, 997, 1297, 1577
StyI CCWWGG 2 cut(s) 969, 1509
TaaI ACNGT 7 cut(s) 118, 713, 1092, 1108, 1256, 1441, 1559
TaqI TCGA 3 cut(s) 89, 825, 1067
TaqII GACCGA 1 cut(s) 460
TatI WGTACW 3 cut(s) 587, 741, 953
TfiI GAWTC 4 cut(s) 374, 608, 1064, 1373
Tru1I TTAA 2 cut(s) 554, 1523
Tru9I TTAA 2 cut(s) 554, 1523
TscAI CASTG 1 cut(s) 1034
TseFI GTSAC 5 cut(s) 253, 498, 655, 920, 1160
TseI GCWGC 4 cut(s) 776, 902, 1111, 1594
Tsp45I GTSAC 5 cut(s) 253, 498, 655, 920, 1160
TspDTI ATGAA 7 cut(s) 180, 376, 414, 699, 1257, 1365, 1559
TspRI CASTG 1 cut(s) 1034
Van91I CCANNNNNTGG 2 cut(s) 118, 228
VpaK11BI GGWCC 5 cut(s) 327, 638, 966, 1294, 1326
XapI RAATTY 7 cut(s) 244, 356, 838, 933, 1136, 1546, 1582
XcmI CCANNNNNNNNNTGG 1 cut(s) 1336
XspI CTAG 5 cut(s) 9, 44, 69, 278, 1389
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.