Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003858

Physical Location & Seq

Genomic Coordinates Forward (+)

26283995 .. 26287013

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGTATGCAGAGACTGGGCTTTTGTTCCCCTATTTACAGAATTCTCCTCAGGATTTCCAGCAGCTGGAGGAGTTCTGCAGAACCCAAAAGTCAATTGCTCCAATGGTTGCCAACTTTTCCACTTTGTTTGTTTTGGTCTATTTTTTAGGCATTGCCAATCACTTTTCATGTTTGTTTAGGTCTGAAGTCGTGTTTTCTCTTTGGCTAATGCAGAATTGCTTCTCCGAGGCTTCGATGATAGCGGATTATGACCTGGGAGGAGAATGGGATCTATTCAAGGCTCCAGAGCCTATCATCGAAGAACCGGCCATTGGCCTTGATCCCATGACACCCATGACAGCAGCCATTTCAATGATATCTTGCAGCGAAGATGTCACCTCCTCTCAAGGACTCAAGGTTGCAGACCTTGAATCACTTCAAAGTGAGCAGCTTTTGAACGATGTCTTCTATGACAAGGATATCTTAGGGAAGGACACGATGGGAGCACCGCTTTCTGAGGAACTAGATATCAAAATTCCTGTTTTGGCAGCGGATGGAAATCATATTCAGGAAAACAAACCGCTCCGTGACGTGTCGTTTCAGAAGAGTGTCAGCTCAGGATGTTTAACCTCAATGGACTGGGTGCACGGAACTTCAACGAAGCCAAGTTTTCTGGATTTTCCTGGCATGGATTTGGGTGCTTATGGGATTCGTAGAGCGTTCAGTGAAGGAGATATTAAGACTCTCGGTAACAGTAACACAAGCCTCATCCAGTCCTCTGTAGAGCGGCCCATAGTTATCAGCAACTGCAGCAGTGAGGAACGCAGGGAAAAGCTTTCAAGATACCGCAACAAGAAGACAAAGAGGAACTTCGGCAGGAAAATCAAGTATGCGTGCAGGAAGGCTCTTGCAGACAACCAGCCAAGGATCCGCGGAAGGTTTGCCAAGACCGAAGAATCGTATGCCAAGAGGCAAATAACCGTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

323

Amino Acids

36.16

Weight (kDa)

5.35

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	268 - 310	2.8e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003858)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27900 AT4G27900 AT5G53420 AT5G53420 AT5G53420 AT5G53420 AT5G53420
fragaria_vesca	FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700 FvH4_7g31700
malus_domestica	MD01G1220400.v1.1 MD07G1289700.v1.1
prunus_persica	Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1 Prupe.2G310900_v2.0.a1
pyrus_communis	pycom01g23000 pycom07g26240
rosa_chinensis	RchiOBHm_Chr1g0380881
rosa_laevigata	RLG00000026265
rosa_multiflora	Rmu_sc0002962.1_g000019
rosa_roxburghii	Rroxscaffold_4G00278990
rosa_rugosa	Rorug01G0424700 Rorug01G0424800 Rorug01G0424900 Rorug01G0425000 Rorug01G0425100
rosa_samantha	Rh1AG449000 Rh1BG404700 Rh1CG418700 Rh1DG435100
rosa_wichuraiana	Rw1G039140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	64
AccBSI	CCGCTC	2 cut(s)	562, 766
AccII	CGCG	1 cut(s)	912
AciI	CCGC	8 cut(s)	242, 488, 530, 560, 766, 826, 910, 912
AclWI	GGATC	4 cut(s)	276, 314, 901, 914
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	40, 513
AcuI	CTGAAG	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	64, 311
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	7 cut(s)	277, 351, 410, 419, 436, 636, 819
AjiI	CACGTC	1 cut(s)	571
AjnI	CCWGG	2 cut(s)	252, 661
AjuI	GAANNNNNNNTTGG	2 cut(s)	294, 326
AluBI	AGCT	4 cut(s)	64, 430, 594, 814
AluI	AGCT	4 cut(s)	64, 430, 594, 814
Alw21I	GWGCWC	2 cut(s)	487, 627
Alw26I	GTCTC	1 cut(s)	5
Alw44I	GTGCAC	1 cut(s)	623
AlwI	GGATC	4 cut(s)	276, 314, 901, 914
AlwNI	CAGNNNCTG	3 cut(s)	14, 64, 786
AoxI	GGCC	3 cut(s)	306, 313, 767
ApaLI	GTGCAC	1 cut(s)	623
ApeKI	GCWGC	6 cut(s)	61, 341, 363, 427, 527, 789
ApoI	RAATTY	2 cut(s)	40, 513
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	2 cut(s)	218, 414
AspS9I	GGNCC	1 cut(s)	768
AsuHPI	GGTGA	1 cut(s)	367
AxyI	CCTNAGG	1 cut(s)	48
BaeGI	GKGCMC	1 cut(s)	627
BamHI	GGATCC	1 cut(s)	906
BbsI	GAAGAC	2 cut(s)	436, 842
Bbv12I	GWGCWC	2 cut(s)	487, 627
BbvI	GCAGC	6 cut(s)	73, 353, 375, 439, 539, 801
BccI	CCATC	2 cut(s)	472, 527
BciT130I	CCWGG	2 cut(s)	254, 663
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	3 cut(s)	76, 759, 787
BisI	GCNGC	7 cut(s)	62, 342, 364, 428, 528, 767, 790
BlsI	GCNGC	7 cut(s)	63, 343, 365, 429, 529, 768, 791
Bme1390I	CCNGG	2 cut(s)	254, 663
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	1 cut(s)	768
BmiI	GGNNCC	2 cut(s)	282, 908
BmrFI	CCNGG	2 cut(s)	254, 663
BmrI	ACTGGG	2 cut(s)	24, 628
BmuI	ACTGGG	2 cut(s)	24, 628
BpiI	GAAGAC	2 cut(s)	436, 842
BpmI	CTGGAG	2 cut(s)	86, 267
Bpu10I	CCTNAGC	1 cut(s)	595
BpuEI	CTTGAG	2 cut(s)	369, 377
BsaBI	GATNNNNATC	1 cut(s)	537
BsaJI	CCNNGG	4 cut(s)	225, 253, 902, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 311
Bse118I	RCCGGY	1 cut(s)	304
Bse1I	ACTGG	3 cut(s)	19, 623, 751
Bse21I	CCTNAGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	254, 663
BseDI	CCNNGG	4 cut(s)	225, 253, 902, 910
BseGI	GGATG	3 cut(s)	538, 605, 747
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	2 cut(s)	64, 311
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	3 cut(s)	62, 486, 609
BseNI	ACTGG	3 cut(s)	19, 623, 751
BseRI	GAGGAG	4 cut(s)	36, 83, 273, 370
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	6 cut(s)	73, 353, 375, 439, 539, 801
BsgI	GTGCAG	1 cut(s)	895
Bsh1236I	CGCG	1 cut(s)	912
BshFI	GGCC	3 cut(s)	308, 315, 769
BsiHKAI	GWGCWC	2 cut(s)	487, 627
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	2 cut(s)	64, 311
BsmAI	GTCTC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	308, 315, 769
Bsp1286I	GDGCHC	2 cut(s)	487, 627
Bsp143I	GATC	3 cut(s)	268, 319, 906
BspACI	CCGC	8 cut(s)	242, 488, 530, 560, 766, 826, 910, 912
BspANI	GGCC	3 cut(s)	308, 315, 769
BspCNI	CTCAG	3 cut(s)	61, 487, 608
BspFNI	CGCG	1 cut(s)	912
BspLI	GGNNCC	2 cut(s)	282, 908
BspMAI	CTGCAG	2 cut(s)	80, 791
BspPI	GGATC	4 cut(s)	276, 314, 901, 914
BsrBI	CCGCTC	2 cut(s)	562, 766
BsrDI	GCAATG	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	304
BsrI	ACTGG	3 cut(s)	19, 623, 751
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	4 cut(s)	225, 253, 902, 910
BssMI	GATC	3 cut(s)	268, 319, 906
BssT1I	CCWWGG	1 cut(s)	902
Bst2UI	CCWGG	2 cut(s)	254, 663
Bst4CI	ACNGT	2 cut(s)	734, 961
Bst6I	CTCTTC	1 cut(s)	578
BstC8I	GCNNGC	1 cut(s)	874
BstDEI	CTNAG	4 cut(s)	48, 463, 495, 595
BstDSI	CCRYGG	1 cut(s)	910
BstF5I	GGATG	3 cut(s)	538, 605, 747
BstFNI	CGCG	1 cut(s)	912
BstKTI	GATC	3 cut(s)	271, 322, 909
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	268, 319, 906
BstMWI	GCNNNNNNNGC	1 cut(s)	789
BstNI	CCWGG	2 cut(s)	254, 663
BstSCI	CCNGG	2 cut(s)	252, 661
BstSFI	CTRYAG	3 cut(s)	76, 759, 787
BstSLI	GKGCMC	1 cut(s)	627
BstUI	CGCG	1 cut(s)	912
BstV1I	GCAGC	6 cut(s)	73, 353, 375, 439, 539, 801
BstV2I	GAAGAC	2 cut(s)	436, 842
BstX2I	RGATCY	2 cut(s)	268, 906
BstYI	RGATCY	2 cut(s)	268, 906
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	308, 315, 769
BtgI	CCRYGG	1 cut(s)	910
BtrI	CACGTC	1 cut(s)	571
BtsCI	GGATG	3 cut(s)	538, 605, 747
BtsI	GCAGTG	1 cut(s)	799
BtsIMutI	CAGTG	2 cut(s)	709, 799
Cac8I	GCNNGC	1 cut(s)	874
CaiI	CAGNNNCTG	3 cut(s)	14, 64, 786
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	768
Cfr42I	CCGCGG	1 cut(s)	913
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	4 cut(s)	168, 325, 334, 667
DdeI	CTNAG	4 cut(s)	48, 463, 495, 595
DpnI	GATC	3 cut(s)	270, 321, 908
DpnII	GATC	3 cut(s)	268, 319, 906
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	578
EarI	CTCTTC	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	902
Eco32I	GATATC	3 cut(s)	357, 460, 508
Eco57I	CTGAAG	1 cut(s)	204
Eco81I	CCTNAGG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	252, 661
EcoRV	GATATC	3 cut(s)	357, 460, 508
EcoT14I	CCWWGG	1 cut(s)	902
ErhI	CCWWGG	1 cut(s)	902
FaeI	CATG	4 cut(s)	171, 328, 337, 670
FalI	AAGNNNNNCTT	4 cut(s)	446, 478, 833, 865
FatI	CATG	4 cut(s)	167, 324, 333, 666
Fnu4HI	GCNGC	7 cut(s)	62, 342, 364, 428, 528, 767, 790
FokI	GGATG	3 cut(s)	545, 612, 734
Fsp4HI	GCNGC	7 cut(s)	62, 342, 364, 428, 528, 767, 790
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	7 cut(s)	62, 342, 364, 428, 528, 767, 790
GsuI	CTGGAG	2 cut(s)	86, 267
HaeIII	GGCC	3 cut(s)	308, 315, 769
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	4 cut(s)	171, 328, 337, 670
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HindIII	AAGCTT	1 cut(s)	812
HinfI	GANTC	5 cut(s)	390, 410, 688, 721, 935
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	625, 964
Hpy188I	TCNGA	4 cut(s)	184, 226, 496, 582
Hpy188III	TCNNGA	6 cut(s)	50, 284, 548, 597, 653, 819
Hpy8I	GTNNAC	2 cut(s)	625, 964
HpyAV	CCTTC	4 cut(s)	463, 701, 874, 909
HpyCH4III	ACNGT	2 cut(s)	734, 961
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	9 cut(s)	8, 78, 211, 363, 401, 625, 789, 876, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	789
HpyF3I	CTNAG	4 cut(s)	48, 463, 495, 595
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	4 cut(s)	171, 328, 337, 670
KspI	CCGCGG	1 cut(s)	913
Kzo9I	GATC	3 cut(s)	268, 319, 906
LmnI	GCTCC	4 cut(s)	103, 286, 482, 567
Lsp1109I	GCAGC	6 cut(s)	73, 353, 375, 439, 539, 801
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	4 cut(s)	373, 566, 728, 734
MalI	GATC	3 cut(s)	270, 321, 908
MbiI	CCGCTC	2 cut(s)	562, 766
MboI	GATC	3 cut(s)	268, 319, 906
MboII	GAAGA	6 cut(s)	311, 380, 436, 595, 847, 944
MfeI	CAATTG	1 cut(s)	93
MflI	RGATCY	2 cut(s)	268, 906
MhlI	GDGCHC	2 cut(s)	487, 627
MluCI	AATT	4 cut(s)	40, 93, 214, 513
MlyI	GAGTC	2 cut(s)	384, 715
MroXI	GAANNNNTTC	2 cut(s)	218, 414
MseI	TTAA	2 cut(s)	605, 717
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	3 cut(s)	64, 530, 912
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	254, 663
MunI	CAATTG	1 cut(s)	93
MvaI	CCWGG	2 cut(s)	254, 663
MvnI	CGCG	1 cut(s)	912
MwoI	GCNNNNNNNGC	1 cut(s)	789
NdeII	GATC	3 cut(s)	268, 319, 906
NlaIII	CATG	4 cut(s)	171, 328, 337, 670
NlaIV	GGNNCC	2 cut(s)	282, 908
NmuCI	GTSAC	2 cut(s)	373, 566
PdmI	GAANNNNTTC	2 cut(s)	218, 414
PfeI	GAWTC	3 cut(s)	410, 688, 935
PflMI	CCANNNNNTGG	1 cut(s)	64
PkrI	GCNGC	7 cut(s)	63, 343, 365, 429, 529, 768, 791
PleI	GAGTC	2 cut(s)	384, 715
PpsI	GAGTC	2 cut(s)	384, 715
Psp6I	CCWGG	2 cut(s)	252, 661
PspGI	CCWGG	2 cut(s)	252, 661
PspN4I	GGNNCC	2 cut(s)	282, 908
PspPI	GGNCC	1 cut(s)	768
PstI	CTGCAG	2 cut(s)	80, 791
PstNI	CAGNNNCTG	3 cut(s)	14, 64, 786
PsuI	RGATCY	2 cut(s)	268, 906
PvuII	CAGCTG	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	350
SacII	CCGCGG	1 cut(s)	913
SaqAI	TTAA	2 cut(s)	605, 717
SatI	GCNGC	7 cut(s)	62, 342, 364, 428, 528, 767, 790
Sau3AI	GATC	3 cut(s)	268, 319, 906
Sau96I	GGNCC	1 cut(s)	768
SchI	GAGTC	2 cut(s)	384, 715
ScrFI	CCNGG	2 cut(s)	254, 663
SduI	GDGCHC	2 cut(s)	487, 627
SfcI	CTRYAG	3 cut(s)	76, 759, 787
Sfr303I	CCGCGG	1 cut(s)	913
SgrBI	CCGCGG	1 cut(s)	913
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	384, 392
SmoI	CTYRAG	2 cut(s)	384, 392
Sse9I	AATT	4 cut(s)	40, 93, 214, 513
SsiI	CCGC	8 cut(s)	242, 488, 530, 560, 766, 826, 910, 912
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	2 cut(s)	252, 661
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	2 cut(s)	734, 961
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	233, 297
TaqII	GACCGA	1 cut(s)	944
TasI	AATT	4 cut(s)	40, 93, 214, 513
TauI	GCSGC	1 cut(s)	769
TfiI	GAWTC	3 cut(s)	410, 688, 935
Tru1I	TTAA	2 cut(s)	605, 717
Tru9I	TTAA	2 cut(s)	605, 717
TscAI	CASTG	2 cut(s)	709, 799
TseFI	GTSAC	2 cut(s)	373, 566
TseI	GCWGC	6 cut(s)	61, 341, 363, 427, 527, 789
Tsp45I	GTSAC	2 cut(s)	373, 566
TspDTI	ATGAA	1 cut(s)	156
TspGWI	ACGGA	2 cut(s)	554, 642
TspRI	CASTG	2 cut(s)	709, 799
Van91I	CCANNNNNTGG	1 cut(s)	64
VneI	GTGCAC	1 cut(s)	623
XapI	RAATTY	2 cut(s)	40, 513
XmnI	GAANNNNTTC	2 cut(s)	218, 414
XspI	CTAG	1 cut(s)	503

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.