pycom07g26700

calcium ion binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013165
Physical Location & Seq
Reverse (-)
26659366 .. 26661150
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1185 bp
ATGGCGAAGGCAGTGGTCTACGCGCTACTTGCCACCGCCTTTATCTTTCTCCTCGTCATGCTTCCCTCCAAACACCGTGGCCCCAACCACCCCCACCCCCACCTTGGCCTCAACCGACGTCTTGGCTACGCGGGTCACGCCCCCATTTTCGACCCTCTGGCAGCCAAGATGGAGTGGTACGCCAAGGAAAGTGGTGGATTCAGAGGGGAAACGAATAGTCGCGTGGGGTTGTCGGAACACAACAACAATCCCATGATGAATGCGAGTGAGGTGGAGGAAATGCATGAATATCTCGGCGATGAGGGAAAGTTGAACCTCACGTTGAGGCTGATTACTTTGTTCCCGTTGATAGACCAGGCGCCAAAAGACGGGTTGATTAACTCTAATGAGCTCGAGGATTGGGTCATGAAACAAACCGTGGAGAGGTTGAATTATAGGACGCAGAAAGAAGTGGAATCGTATGACAAAGATGGTGATGGAACAATTTCTTTCATGGAGTATCTGCCCAAGTTTTCCATACAGGACCTAGTAAATTCCCTTCATTCCCATATTACTGTGGCAAAAAATATACGATTTGCGAGTTCTGGTTCAACAGAAATCTCCATTTTTTGTTGCAGTTTGTTGCACCCAGAAGACAGTAACAACGAAGAAATTCACAAATGGCTGTTGAGGGAAAAAATGAAGTACATTTTCTCACATATCTTCTCTGTCTTTCACACTAAACATATTAATGCCTTAATATATTTTCTGAATAATTTGATGCAAAGGAACGGATTAACGAAATGTCTGCTTATAATTTACAGGCGGATGGATCAGGATAACGATGGCAAACTGAATTTCCACGAGTTTTTACACAACGCTTATGATAATTACAAGACTTACGTTGAATTTGAAAGGGGCGGGAAAAATGTACCCACACCGGAAGAGAAATTTGCAGAACTTGATGTGAACAAGAACAAACGCTTGGAAGTGGAAGAATTGAACCCAATGCTGCATTACATTCACCCAGGAGAATTTTCCTATGCTAAATATTATGCAAGCTTTCTGATGTCGGAGGCGGATGATAACAAAGATAGAAAATTAACGCTCGAGGAGATGCTCGATCATGACTATGTTTTCTATAGCACAGTATATGATGACGGCATCAACGAAGATTTTGATGCGGATTTTCACGACGAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

395

Amino Acids

45.83

Weight (kDa)

5.43

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 309 - 367 5.3e-06 EF-hand domain pair
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27790 AT4G27790
fragaria_vesca FvH4_7g32060
malus_domestica MD01G1223500.v1.1 MD07G1294200.v1.1
prunus_persica Prupe.2G314000_v2.0.a1
pyrus_communis pycom07g26700
rosa_chinensis RchiOBHm_Chr1g0381671
rosa_laevigata RLG00000026216
rosa_multiflora Rmu_sc0004579.1_g000002 Rmu_sc0004579.1_g000003
rosa_roxburghii Rroxscaffold_4G00278530
rosa_rugosa Rorug01G0430300
rosa_samantha Rh1AG453600 Rh1BG410800 Rh1CG425200 Rh1DG442500
rosa_wichuraiana Rw1G039570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AatII GACGTC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 358
AccI GTMKAC 1 cut(s) 18
AccII CGCG 3 cut(s) 23, 131, 222
AciI CCGC 6 cut(s) 36, 131, 805, 900, 1058, 1163
AclWI GGATC 1 cut(s) 819
AcsI RAATTY 7 cut(s) 532, 651, 835, 887, 929, 1013, 1178
AcyI GRCGYC 2 cut(s) 118, 359
AfaI GTAC 3 cut(s) 179, 686, 912
AfiI CCNNNNNNNGG 3 cut(s) 104, 368, 423
AgsI TTSAA 6 cut(s) 313, 430, 591, 887, 893, 982
AjnI CCWGG 2 cut(s) 354, 1006
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AluBI AGCT 2 cut(s) 391, 1041
AluI AGCT 2 cut(s) 391, 1041
Alw21I GWGCWC 1 cut(s) 393
AlwI GGATC 1 cut(s) 819
Ama87I CYCGRG 2 cut(s) 392, 1088
AoxI GGCC 2 cut(s) 79, 106
ApeKI GCWGC 2 cut(s) 161, 991
ApoI RAATTY 7 cut(s) 532, 651, 835, 887, 929, 1013, 1178
AseI ATTAAT 1 cut(s) 729
Asp700I GAANNNNTTC 2 cut(s) 484, 651
AspLEI GCGC 2 cut(s) 25, 361
AspS9I GGNCC 2 cut(s) 80, 523
AsuHPI GGTGA 2 cut(s) 485, 995
AvaI CYCGRG 2 cut(s) 392, 1088
AvaII GGWCC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 393
BarI GAAGNNNNNNTAC 2 cut(s) 522, 554
BauI CACGAG 1 cut(s) 842
BbsI GAAGAC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 173, 978
BccI CCATC 5 cut(s) 163, 464, 470, 802, 818
BceAI ACGGC 1 cut(s) 1156
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 2 cut(s) 356, 1008
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 1 cut(s) 1120
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 2 cut(s) 162, 992
BlsI GCNGC 2 cut(s) 163, 993
Bme1390I CCNGG 2 cut(s) 356, 1008
Bme18I GGWCC 1 cut(s) 523
BmeT110I CYCGRG 2 cut(s) 392, 1088
BmgT120I GGNCC 2 cut(s) 80, 523
BmiI GGNNCC 2 cut(s) 82, 360
BmrFI CCNGG 2 cut(s) 356, 1008
BmsI GCATC 4 cut(s) 750, 1086, 1150, 1152
BpiI GAAGAC 1 cut(s) 639
BsaHI GRCGYC 2 cut(s) 118, 359
BsaJI CCNNGG 5 cut(s) 76, 103, 183, 417, 1006
BsaWI WCCGGW 1 cut(s) 919
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 368, 423
BseBI CCWGG 2 cut(s) 356, 1008
BseDI CCNNGG 5 cut(s) 76, 103, 183, 417, 1006
BseGI GGATG 2 cut(s) 813, 1066
BseLI CCNNNNNNNGG 3 cut(s) 104, 368, 423
BseRI GAGGAG 2 cut(s) 41, 1106
BseXI GCAGC 2 cut(s) 173, 978
Bsh1236I CGCG 3 cut(s) 23, 131, 222
BshFI GGCC 2 cut(s) 81, 108
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 2 cut(s) 392, 1088
BsiSI CCGG 1 cut(s) 920
BslI CCNNNNNNNGG 3 cut(s) 104, 368, 423
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 2 cut(s) 81, 108
BsoBI CYCGRG 2 cut(s) 392, 1088
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 811, 1102
BspACI CCGC 6 cut(s) 36, 131, 805, 900, 1058, 1163
BspANI GGCC 2 cut(s) 81, 108
BspFNI CGCG 3 cut(s) 23, 131, 222
BspHI TCATGA 2 cut(s) 405, 1105
BspLI GGNNCC 2 cut(s) 82, 360
BspPI GGATC 1 cut(s) 819
BspT107I GGYRCC 1 cut(s) 358
BssECI CCNNGG 5 cut(s) 76, 103, 183, 417, 1006
BssMI GATC 2 cut(s) 811, 1102
BssNI GRCGYC 2 cut(s) 118, 359
BssSI CACGAG 1 cut(s) 842
BssT1I CCWWGG 2 cut(s) 103, 183
Bst2BI CACGAG 1 cut(s) 842
Bst2UI CCWGG 2 cut(s) 356, 1008
Bst4CI ACNGT 5 cut(s) 77, 418, 556, 638, 1129
Bst6I CTCTTC 1 cut(s) 918
BstACI GRCGYC 2 cut(s) 118, 359
BstC8I GCNNGC 1 cut(s) 1039
BstDSI CCRYGG 2 cut(s) 76, 417
BstF5I GGATG 2 cut(s) 813, 1066
BstFNI CGCG 3 cut(s) 23, 131, 222
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 25, 361
BstKTI GATC 2 cut(s) 814, 1105
BstMBI GATC 2 cut(s) 811, 1102
BstMWI GCNNNNNNNGC 2 cut(s) 29, 137
BstNI CCWGG 2 cut(s) 356, 1008
BstSCI CCNGG 2 cut(s) 354, 1006
BstSFI CTRYAG 1 cut(s) 1120
BstUI CGCG 3 cut(s) 23, 131, 222
BstV1I GCAGC 2 cut(s) 173, 978
BstV2I GAAGAC 1 cut(s) 639
BsuRI GGCC 2 cut(s) 81, 108
BtgI CCRYGG 2 cut(s) 76, 417
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 813, 1066
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 1039
CciI TCATGA 2 cut(s) 405, 1105
CfoI GCGC 2 cut(s) 25, 361
Cfr13I GGNCC 2 cut(s) 80, 523
CseI GACGC 1 cut(s) 448
Csp6I GTAC 3 cut(s) 178, 685, 911
CspCI CAANNNNNGTGG 4 cut(s) 58, 93, 172, 207
CviAII CATG 6 cut(s) 58, 253, 284, 406, 493, 1106
CviJI RGCY 8 cut(s) 81, 108, 126, 164, 328, 391, 664, 1041
CviKI_1 RGCY 8 cut(s) 81, 108, 126, 164, 328, 391, 664, 1041
CviQI GTAC 3 cut(s) 178, 685, 911
DinI GGCGCC 1 cut(s) 360
DpnI GATC 2 cut(s) 813, 1104
DpnII GATC 2 cut(s) 811, 1102
Eam1104I CTCTTC 1 cut(s) 918
EarI CTCTTC 1 cut(s) 918
EciI GGCGGA 2 cut(s) 820, 1073
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 2 cut(s) 103, 183
Eco24I GRGCYC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 523
Eco53kI GAGCTC 1 cut(s) 391
Eco88I CYCGRG 2 cut(s) 392, 1088
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 1178
EcoRII CCWGG 2 cut(s) 354, 1006
EcoT14I CCWWGG 2 cut(s) 103, 183
EcoT22I ATGCAT 1 cut(s) 285
EcoT38I GRGCYC 1 cut(s) 393
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
ErhI CCWWGG 2 cut(s) 103, 183
FaeI CATG 6 cut(s) 61, 256, 287, 409, 496, 1109
FatI CATG 6 cut(s) 57, 252, 283, 405, 492, 1105
FauI CCCGC 2 cut(s) 124, 893
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 162, 992
FokI GGATG 2 cut(s) 820, 1073
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 2 cut(s) 162, 992
FspBI CTAG 1 cut(s) 527
GlaI GCGC 2 cut(s) 24, 360
GluI GCNGC 2 cut(s) 162, 992
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 81, 108
HapII CCGG 1 cut(s) 920
HgaI GACGC 1 cut(s) 448
HhaI GCGC 2 cut(s) 25, 361
Hin1I GRCGYC 2 cut(s) 118, 359
Hin1II CATG 6 cut(s) 61, 256, 287, 409, 496, 1109
Hin6I GCGC 2 cut(s) 23, 359
HinP1I GCGC 2 cut(s) 23, 359
HindIII AAGCTT 1 cut(s) 1039
HinfI GANTC 2 cut(s) 198, 455
HpaII CCGG 1 cut(s) 920
HphI GGTGA 2 cut(s) 485, 995
Hpy166II GTNNAC 2 cut(s) 19, 949
Hpy188I TCNGA 6 cut(s) 203, 235, 750, 1047, 1054, 1184
Hpy188III TCNNGA 4 cut(s) 406, 815, 1106, 1172
Hpy8I GTNNAC 2 cut(s) 19, 949
Hpy99I CGWCG 2 cut(s) 120, 1178
HpyAV CCTTC 1 cut(s) 548
HpyCH4III ACNGT 5 cut(s) 77, 418, 556, 638, 1129
HpyCH4IV ACGT 3 cut(s) 118, 320, 882
HpyCH4V TGCA 7 cut(s) 283, 615, 625, 763, 935, 994, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 137
HpySE526I ACGT 3 cut(s) 118, 320, 882
Hsp92I GRCGYC 2 cut(s) 118, 359
Hsp92II CATG 6 cut(s) 61, 256, 287, 409, 496, 1109
HspAI GCGC 2 cut(s) 23, 359
KasI GGCGCC 1 cut(s) 358
Kzo9I GATC 2 cut(s) 811, 1102
Lsp1109I GCAGC 2 cut(s) 173, 978
LweI GCATC 4 cut(s) 750, 1086, 1150, 1152
MaeI CTAG 1 cut(s) 527
MaeII ACGT 3 cut(s) 118, 320, 882
MaeIII GTNAC 2 cut(s) 134, 638
MalI GATC 2 cut(s) 813, 1104
MboI GATC 2 cut(s) 811, 1102
MboII GAAGA 6 cut(s) 644, 659, 694, 935, 986, 1163
MhlI GDGCHC 1 cut(s) 393
Mly113I GGCGCC 1 cut(s) 359
MmeI TCCRAC 2 cut(s) 213, 1032
Mph1103I ATGCAT 1 cut(s) 285
MroXI GAANNNNTTC 2 cut(s) 484, 651
MseI TTAA 5 cut(s) 378, 729, 737, 776, 1082
MslI CAYNNNNRTG 2 cut(s) 729, 1110
MspI CCGG 1 cut(s) 920
MspR9I CCNGG 2 cut(s) 356, 1008
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 2 cut(s) 356, 1008
MvnI CGCG 3 cut(s) 23, 131, 222
MwoI GCNNNNNNNGC 2 cut(s) 29, 137
NarI GGCGCC 1 cut(s) 359
NdeII GATC 2 cut(s) 811, 1102
NlaIII CATG 6 cut(s) 61, 256, 287, 409, 496, 1109
NlaIV GGNNCC 2 cut(s) 82, 360
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 134
NsiI ATGCAT 1 cut(s) 285
PaeR7I CTCGAG 2 cut(s) 392, 1088
PagI TCATGA 2 cut(s) 405, 1105
PcsI WCGNNNNNNNCGW 1 cut(s) 1146
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 2 cut(s) 484, 651
PfeI GAWTC 2 cut(s) 198, 455
PkrI GCNGC 2 cut(s) 163, 993
PluTI GGCGCC 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 523
PshBI ATTAAT 1 cut(s) 729
PsiI TTATAA 1 cut(s) 794
Psp124BI GAGCTC 1 cut(s) 393
Psp5II RGGWCCY 1 cut(s) 523
Psp6I CCWGG 2 cut(s) 354, 1006
PspGI CCWGG 2 cut(s) 354, 1006
PspN4I GGNNCC 2 cut(s) 82, 360
PspPI GGNCC 2 cut(s) 80, 523
PspPPI RGGWCCY 1 cut(s) 523
PspXI VCTCGAGB 2 cut(s) 392, 1088
RsaI GTAC 3 cut(s) 179, 686, 912
RsaNI GTAC 3 cut(s) 178, 685, 911
RseI CAYNNNNRTG 2 cut(s) 729, 1110
SacI GAGCTC 1 cut(s) 393
SaqAI TTAA 5 cut(s) 378, 729, 737, 776, 1082
SatI GCNGC 2 cut(s) 162, 992
Sau3AI GATC 2 cut(s) 811, 1102
Sau96I GGNCC 2 cut(s) 80, 523
ScrFI CCNGG 2 cut(s) 356, 1008
SduI GDGCHC 1 cut(s) 393
SfaNI GCATC 4 cut(s) 750, 1086, 1150, 1152
SfcI CTRYAG 1 cut(s) 1120
SfoI GGCGCC 1 cut(s) 360
Sfr274I CTCGAG 2 cut(s) 392, 1088
SinI GGWCC 1 cut(s) 523
SlaI CTCGAG 2 cut(s) 392, 1088
SmiMI CAYNNNNRTG 2 cut(s) 729, 1110
SmlI CTYRAG 2 cut(s) 392, 1088
SmoI CTYRAG 2 cut(s) 392, 1088
SsiI CCGC 6 cut(s) 36, 131, 805, 900, 1058, 1163
SspDI GGCGCC 1 cut(s) 358
SspI AATATT 1 cut(s) 1031
SspMI CTAG 1 cut(s) 527
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 2 cut(s) 354, 1006
StyI CCWWGG 2 cut(s) 103, 183
TaaI ACNGT 5 cut(s) 77, 418, 556, 638, 1129
TaiI ACGT 3 cut(s) 121, 323, 885
TaqI TCGA 4 cut(s) 150, 393, 1089, 1101
TatI WGTACW 1 cut(s) 684
TfiI GAWTC 2 cut(s) 198, 455
Tru1I TTAA 5 cut(s) 378, 729, 737, 776, 1082
Tru9I TTAA 5 cut(s) 378, 729, 737, 776, 1082
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 161, 991
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 6 cut(s) 272, 300, 422, 481, 530, 695
TspGWI ACGGA 1 cut(s) 786
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 523
VspI ATTAAT 1 cut(s) 729
XapI RAATTY 7 cut(s) 532, 651, 835, 887, 929, 1013, 1178
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XhoI CTCGAG 2 cut(s) 392, 1088
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 2 cut(s) 484, 651
XspI CTAG 1 cut(s) 527
ZraI GACGTC 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.