Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015414

Physical Location & Seq

Genomic Coordinates Reverse (-)

27340716 .. 27346004

Gene Structure 5289 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4482 bp

ATGGCGTTCTCAGGAGTGCTGACCGTCACCACGTCACCCTTACTGCATTCAAGCTCGATGTCCTCCTCACCTTCAATTTCCAAGGTATGCAGCAAACCAACTTCTCTAATTTCCTGCTCTTTGACACCTACGCCGCCGTCTGCCACCGATTCTACTTCTAGATTTTCCGCGGAGCCACCGTCTGACTCTATTACTACAACTAACGTCAAAACCGCTCAGAAATTTAGCTACAGCAGAGCCTCCCCATCAGTCAGATGGCCCCACTTGAAACTAACAGAAACTTACCCCTCACCGCCTACACAATTCACCGTTGCTTCTCCTCCGCCAAACCATGTCGTCGGCGATTCCCCTGATGGTGGAGAGGAAGACCAGAATTTGGGTTCTGTGGGAGCTTTGGAGGAGAGGAATGACGAAACCCAACAAGTGCTGGGGAGGCCGAGCAAAACCAAGGCGAAGAAAATGACGAAACTTGCTCTCAAAAGAGCAAAAGATTGGCGGGAAAGAGTGAAGCTTTTTACTGATAGGATTTTGGGGTTGAAATCCGACGAGTTTGTAGCCAATGTGTTGGATGATAGGAGAGTTCAAATGACTCCGACTGATTTTTGCTTTGTGGTGAAATGGGTAGGCCAGTCAAGCTGGCAGCGCGCATTGGAGGTGTACGAATGGTTGAATTTACGCCATTGGTACTCCCCAAATGCTCGAATGCTTGCCACTATCTTGGCTGTTCTTGGAAAGGCTAACCAAGAAGAATTGGCTGTGGAGATATTTCAAAGGGCTGAACCTGGAATTGGGAATACAGTCCAAGTGTACAATGCAATGATGGGTGTTTATGCTCGAAATGGTCGGTTTAGCAAGGTCCAAGGACTGCTCGATGTAATGCGTGAGAGAGGGTGCGAACCGGACCTTGTGAGTCTCAATACTTTGATCAATGCTCGGCTAAGGTCAGGTGCAATGACACCAAATTTGGGAATTGAACTTTTGAATGAGGTGAGAAGGGCGGGTCTTAGGCCTGATATAATCACTTATAACACTCTTATAAGTGGCTGTTCGCGTGAATCTAATTTAGAGGAGGCAGTGAATGTTTACAATGACATGGAAGCACATAATTGCCAACCTGATCTTTGGACTTATAATGCCATGATTTCGGTGTATGGGAGATGTGGAGAGTCAAGCAAAGCCGAGCAGCTCTTTAAGGAATTGGAGTCGAAAGGGTTTTTCCCAGATGCGGTGACATATAATTCTTTGTTGTATGCTTTTGCAAGAGAACTTGATATAGAGAAAGTAAGGGATATTGGTGAAGATATGGTGAAAATGGGGTTTGGTAAAGATGAGATGACGTATAATACCATCATCCACATGTATGGAAAGCAGGGCCAGCATGATTTAGCATTTCAGGTTTACAGGGACATGAAAATGCTAGGCCGGATTCCTGATGCTGTTACCTACACTGTGTTGATAGATTCACTTGGAAAAGCAAATAAGATAACACAGGCCGCTAATGTAATGTCAGAGATGTTGGACAGTGGAGTGAAACCCACTCTTCGGACGTATAGTGCTTTGATGTGTGCATATGCCAAGGCTGGTAAACAGGTGGAGGCTCAAGAGACATTTGATTGCATGGTTAGGTCGGGTATTAGACCTGATCATCTGGCATACTCCATTATGTTGGATATCTATCTAAAGGTCAATGAGACAAAGAACGCAACGGCATTGTATCACGAAATGATGCAGGATGGTTTCATGCCAGATAATATTCTCTATGGGGTCATGCTGCGGGTTCTTGGAAAAGAGAATAAATTGGAAGGCATTGAAAAAGTGATCAGAGATATGGAAAACGTTGGTGGTATGAACCCACAAGTTATCTCTTCTATTCTTGTTAAGGGAGAATGCTATGACCAAGCTGCCAGAATGTTGAGATTAGCTATTAGTAGTGGCTATGAACTAGACCGGGAAAATCTTTTATCTATTCTTAGCTCCTATAGTTCATGTGGAAGGCACTCAGAAGCATGTGAATTGCTTGAATATTTGAGAGAACACGCTCCCAGTTCCACCCAACTGATAAATGAAGCACTGGTTGTCATACAATGCAAGGCTCGTGAATTTGATGCTGCCTTGGTGGAATATAGTAATACCAGGGGATTCCATTCTTTTAGTAGAAGTCCTACCATGTATGAAATTCTTATTCAAGGCTGCCAAGAGAATGAACTCCTTGGTGAAGCTTCTCAGGTTTATTCTGACATGAGATTATATGGCGTTGACCCCTCTCAACATCTTTACCAAATTATGGTGCTCATATATTGTACGATGGGTTTCCCTGAGACAGCACATCATTTGATTGATCAGGCAGAGACAAAAGGCATTTTATTTGACAATGTCAACATATATGTTGATGTTATTGAAGTCTATGGGAAATTGAAGCAGTGGCAGAAAGCTGAAAGTTTGGTGGGAAGTCTCAGACAGAGATGTAAATCAGTGGATAGGAAGGCCTGGAATGCCTTGATACAAGCTTATGCTGCAAGTGGTTGCTATGAGCGAGCTAGAGTGATATTTAACACAATGATGAGAGATGGTCCTTCCCCAACAGTAGATTCTGTTAATGGTCTTTTGCAAGCTCTGGTTGTTGATGGGAGATTGGACGAACTCTATGTTCTAATCGAGGAGTTGCAAGATATGGGTTTTAAAATAAGCAAGAGTTCAATTCTCTTGACACTTGAAGCATTTGCTCGAGACGGTAACATATTTGAGGTTAAGAAGATATACCAAGGAATGAAGGCTGCAGGCTATTTTCCCAACATGGATTGTTTCAGGATTATGATCAAGTTATTGTGCAGGGGAAAACGAATAATGGATGTTGAAGCAATGGTTTCTGAGATGGAAGAGGCAGGATTCAGGCCTGATCTCTCAATATGGAATTCTATGCTTAAGTTATATGCAGGAATTGCGGATTTCAAAAAGACAGTTAAAGTATACCAGCGGATTAAAGAGGCTGCACTTCAACCAGATGAGGATACTTATAATACTTTAATCATAATGTACTGCAAAGATCGTAGACCAGAGGAAGGTTTGTCATTGATGCATGAAATGAGAAGGCAGGGGCTAGAACCTAAGTTGGATACTTACAAAAGCTTAATTTCAGCGTTTGGTAAGCAGAAGTTGTTGGATCAAGCTGAGGAACTATTCGAAGAGTTAAGGTCAAATGGATGTAAATTGGATCGCTCATTTTATCATACCATGATGAAAATGTTTAGAAATTCAGGAGACCATGGCAAAGCTGAGATGCTGTTGGCGACAATGAAAGAGTCTGGAATAGAACCCAACTCTGCCACAATGCATTTGCTTATGGTTTCTTATGGCAGCTCTGGACAGCCTCAAGAAGCTGAAAAGGTGCTTGACAATTTGAGAGTAACTGGCTTAGATCTTGATACGTTACCGTATAGTTCAGTTATTGGTGCTTATCTGAAGAACGGAGATTATAACATTGGAATTCAAAAGCTCAACGAGATGAAGGAGGGCGGTCTGGCGCCAGATCATAGAATTTGGACTTGTTTTATAAGGGCTGCAAGTTTGTCTCAGCACAGAAGTGAAGCTTTTATTCTCCTAAACGCACTGCGTGATGTTGGATTTGATCTTCCTGTCAGGCTTGTGACCGAAAATCCTGAATCGCTAGTTTCAGAAGTAGACTGTTGTCTAGAGAAACTAGAACCCCTAGAAGACAATGCAGCCTTCAACTTTGTCAACGCATTGGAGGACCTTTTGTGGGCATATGAACTCCGAGCCACTGCTTCATGGGTTTTCCAATTGGCCGTAAAGAGAGGCATCTATAACAATAATGTGTTCAGGGTAGCTGACAAAGACTGGGGTGCTGATTTTAGAAAGTTGTCAGCTGGTTCTGCTCTTGTTGGCCTTACATTATGGCTTGATCAGATGCAGGATGCATCCTTGGAGGGTTATCCAGAGTCTCCGAAATCGGTTGTCCTGATAACGGGAACATCCGAGTACAACATGGTTTCACTTAATAGCACATTGAAGGCATGCCTTTGGGAGATGGGTTCGCCTTTTCTGCCTTGCAAAACACGAAGCGGCCTACTAGTAGCAAAGGCACACTCCCTTAGGATGTGGTTAAAGGACTCCCCGTTTTGCTTGGACCTCGAGTTGAAAGATGCCCCATCTCTCCCCGAATCAAACTCAATGCAGCTCATCGATGGATGCTTCCTAAGACGCGGTCTCGTTCCTGCGTTTAAGGAGATAACTGAGAAGCTTGGACTAGTGAGACCAAAGAAATTTGCTAGATTGGCTCTGCTATCAGATGAAAAGAGAGAGAAAGTTATCGAAGCTGACATTGAGGGGAGGAAAGAGAAGTTAGAAAAAATGAAGGAAAAGGGGGAACCAAGGAGGGTGAGCAGGATTAAAAGGCTTGGGAAGAGGAAGTATGGTGCTGTCGGGCTTGTAAGAGGCAATTTGTTGGTTACAAGAATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

1494

Amino Acids

167.93

Weight (kDa)

6.35

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	236 - 364	5e-08	Fungal tetratrico peptide repeats
PPR_2	PF13041	267 - 311	3.1e-09	PPR repeat family
PPR	PF01535	269 - 298	9.4e-06	PPR repeat
PPR_3	PF13812	326 - 385	5.9e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	334 - 366	1.1e-08	PPR repeat
PPR_2	PF13041	337 - 382	3.5e-15	PPR repeat family
PPR_long	PF17177	338 - 461	2.9e-10	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	340 - 370	4.5e-07	PPR repeat
PPR_1	PF12854	369 - 400	1.1e-06	PPR repeat
PPR_2	PF13041	376 - 421	5.6e-12	PPR repeat family
PPR	PF01535	376 - 405	7.6e-08	PPR repeat
PPR_3	PF13812	431 - 491	1.1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	443 - 490	3e-15	PPR repeat family
TPR_24	PF23276	449 - 574	1.1e-07	Fungal tetratrico peptide repeats
PPR_long	PF17177	461 - 561	8.1e-10	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	477 - 526	7.6e-12	PPR repeat family
PPR_3	PF13812	501 - 559	1.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	516 - 557	1.9e-07	PPR repeat family
PPR_2	PF13041	829 - 872	4.8e-06	PPR repeat family
PPR_long	PF17177	913 - 1009	1.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	955 - 1013	9.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	965 - 1014	3.9e-08	PPR repeat family
PPR_long	PF17177	984 - 1111	9.2e-11	Pentacotripeptide-repeat region of PRORP
PPR	PF01535	1004 - 1033	2.7e-07	PPR repeat
PPR_2	PF13041	1004 - 1049	3.8e-10	PPR repeat family
PPR_3	PF13812	1023 - 1082	3.4e-07	Pentatricopeptide repeat domain
PPR	PF01535	1039 - 1068	5.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015414)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18110
fragaria_vesca	FvH4_4g17300 FvH4_4g17300
malus_domestica	MD07G1304500.v1.1
prunus_persica	Prupe.6G174500_v2.0.a1
pyrus_communis	pycom07g27730
rosa_chinensis	RchiOBHm_Chr4g0421271
rosa_laevigata	RLG00000007705
rosa_multiflora	Rmu_sc0009290.1_g000019
rosa_roxburghii	Rroxscaffold_5G00363500
rosa_rugosa	Rorug04G0169600
rosa_samantha	Rh4AG230100 Rh4BG232900 Rh4CG244500 Rh4DG228700
rosa_wichuraiana	Rw4G020360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	6 cut(s)	1026, 1037, 1131, 3015, 3474, 3551
AccB1I	GGYRCC	1 cut(s)	3520
AccB7I	CCANNNNNTGG	2 cut(s)	376, 2284
AccBSI	CCGCTC	1 cut(s)	215
AccI	GTMKAC	3 cut(s)	2967, 3049, 3678
AccII	CGCG	4 cut(s)	170, 645, 1051, 4221
AclI	AACGTT	1 cut(s)	1836
AclWI	GGATC	2 cut(s)	3168, 3219
AcoI	YGGCCR	1 cut(s)	3801
AcuI	CTGAAG	1 cut(s)	3479
AcyI	GRCGYC	1 cut(s)	3521
AdeI	CACNNNGTG	1 cut(s)	3611
AfaI	GTAC	6 cut(s)	659, 686, 809, 2302, 3035, 3998
AflII	CTTAAG	1 cut(s)	2921
AflIII	ACRYGT	1 cut(s)	1356
AhlI	ACTAGT	2 cut(s)	4087, 4264
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	3 cut(s)	781, 2132, 2486
AjuI	GAANNNNNNNTTGG	4 cut(s)	771, 803, 2572, 2604
AleI	CACNNNNGTG	1 cut(s)	3579
Alw21I	GWGCWC	1 cut(s)	2292
AlwI	GGATC	2 cut(s)	3168, 3219
Ama87I	CYCGRG	2 cut(s)	2724, 4148
ArsI	GACNNNNNNTTYG	2 cut(s)	946, 978
AspLEI	GCGC	3 cut(s)	645, 647, 3523
AspS9I	GGNCC	7 cut(s)	258, 856, 901, 1372, 2570, 3748, 4144
AsuC2I	CCSGG	1 cut(s)	1949
AsuII	TTCGAA	1 cut(s)	3180
AvaI	CYCGRG	2 cut(s)	2724, 4148
AvaII	GGWCC	5 cut(s)	856, 901, 2570, 3748, 4144
AxyI	CCTNAGG	1 cut(s)	4109
BanI	GGYRCC	1 cut(s)	3520
BauI	CACGAG	1 cut(s)	2094
BbsI	GAAGAC	2 cut(s)	372, 3717
Bbv12I	GWGCWC	1 cut(s)	2292
BbvCI	CCTCAGC	1 cut(s)	3168
BceAI	ACGGC	3 cut(s)	121, 1722, 3788
BciT130I	CCWGG	3 cut(s)	783, 2134, 2488
BciVI	GTATCC	2 cut(s)	3001, 3106
BclI	TGATCA	6 cut(s)	924, 1642, 1818, 2338, 2814, 3919
BcnI	CCSGG	1 cut(s)	1949
BcuI	ACTAGT	2 cut(s)	4087, 4264
BfmI	CTRYAG	3 cut(s)	229, 1978, 2775
BfoI	RGCGCY	1 cut(s)	3524
BfrI	CTTAAG	1 cut(s)	2921
BfuI	GTATCC	2 cut(s)	3001, 3106
BglII	AGATCT	1 cut(s)	3415
Bme1390I	CCNGG	4 cut(s)	783, 1949, 2134, 2488
Bme18I	GGWCC	5 cut(s)	856, 901, 2570, 3748, 4144
BmeT110I	CYCGRG	2 cut(s)	2724, 4148
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	7 cut(s)	258, 856, 901, 1372, 2570, 3748, 4144
BmiI	GGNNCC	4 cut(s)	174, 260, 3522, 4386
BmrFI	CCNGG	4 cut(s)	783, 1949, 2134, 2488
BmrI	ACTGGG	2 cut(s)	2037, 3865
BmuI	ACTGGG	2 cut(s)	2037, 3865
BoxI	GACNNNNGTC	1 cut(s)	3684
BpiI	GAAGAC	2 cut(s)	372, 3717
Bpu10I	CCTNAGC	2 cut(s)	938, 3168
Bpu14I	TTCGAA	1 cut(s)	3180
BpuEI	CTTGAG	2 cut(s)	1584, 3354
BpuMI	CCSGG	1 cut(s)	1949
Bsa29I	ATCGAT	1 cut(s)	4200
BsaBI	GATNNNNATC	3 cut(s)	1674, 2467, 2813
BsaHI	GRCGYC	1 cut(s)	3521
BsaI	GGTCTC	3 cut(s)	3252, 4229, 4264
BsaWI	WCCGGW	1 cut(s)	898
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bse1I	ACTGG	5 cut(s)	628, 2043, 2076, 3412, 3860
Bse21I	CCTNAGG	1 cut(s)	4109
Bse3DI	GCAATG	3 cut(s)	822, 957, 2865
Bse8I	GATNNNNATC	3 cut(s)	1674, 2467, 2813
BseBI	CCWGG	3 cut(s)	783, 2134, 2488
BseCI	ATCGAT	1 cut(s)	4200
BseJI	GATNNNNATC	3 cut(s)	1674, 2467, 2813
BseMI	GCAATG	3 cut(s)	822, 957, 2865
BseNI	ACTGG	5 cut(s)	628, 2043, 2076, 3412, 3860
BsePI	GCGCGC	1 cut(s)	643
BseRI	GAGGAG	5 cut(s)	55, 309, 413, 1082, 2672
BseYI	CCCAGC	1 cut(s)	427
BsgI	GTGCAG	2 cut(s)	2848, 2973
Bsh1236I	CGCG	4 cut(s)	170, 645, 1051, 4221
BshNI	GGYRCC	1 cut(s)	3520
BshVI	ATCGAT	1 cut(s)	4200
BsiHKAI	GWGCWC	1 cut(s)	2292
BsiHKCI	CYCGRG	2 cut(s)	2724, 4148
BsiSI	CCGG	3 cut(s)	899, 1423, 1948
BslFI	GGGAC	1 cut(s)	1418
BsmBI	CGTCTC	1 cut(s)	2721
BsmFI	GGGAC	1 cut(s)	1418
BsmI	GAATGC	4 cut(s)	46, 708, 1892, 2497
Bso31I	GGTCTC	3 cut(s)	3252, 4229, 4264
BsoBI	CYCGRG	2 cut(s)	2724, 4148
Bsp119I	TTCGAA	1 cut(s)	3180
Bsp1286I	GDGCHC	1 cut(s)	2292
Bsp1407I	TGTACA	1 cut(s)	807
Bsp19I	CCATGG	1 cut(s)	3262
BspDI	ATCGAT	1 cut(s)	4200
BspFNI	CGCG	4 cut(s)	170, 645, 1051, 4221
BspLI	GGNNCC	4 cut(s)	174, 260, 3522, 4386
BspMAI	CTGCAG	1 cut(s)	2779
BspPI	GGATC	2 cut(s)	3168, 3219
BspT104I	TTCGAA	1 cut(s)	3180
BspT107I	GGYRCC	1 cut(s)	3520
BspTI	CTTAAG	1 cut(s)	2921
BspTNI	GGTCTC	3 cut(s)	3252, 4229, 4264
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	3 cut(s)	822, 957, 2865
BsrGI	TGTACA	1 cut(s)	807
BsrI	ACTGG	5 cut(s)	628, 2043, 2076, 3412, 3860
BssHII	GCGCGC	1 cut(s)	643
BssNAI	GTATAC	1 cut(s)	2968
BssNI	GRCGYC	1 cut(s)	3521
BssSI	CACGAG	1 cut(s)	2094
Bst1107I	GTATAC	1 cut(s)	2968
Bst2BI	CACGAG	1 cut(s)	2094
Bst2UI	CCWGG	3 cut(s)	783, 2134, 2488
Bst6I	CTCTTC	5 cut(s)	1545, 1870, 2871, 3177, 4415
BstACI	GRCGYC	1 cut(s)	3521
BstAFI	CTTAAG	1 cut(s)	2921
BstAPI	GCANNNNNTGC	1 cut(s)	2939
BstAUI	TGTACA	1 cut(s)	807
BstBI	TTCGAA	1 cut(s)	3180
BstC8I	GCNNGC	8 cut(s)	638, 645, 708, 1376, 2535, 2610, 2779, 4033
BstDSI	CCRYGG	2 cut(s)	168, 3262
BstFNI	CGCG	4 cut(s)	170, 645, 1051, 4221
BstH2I	RGCGCY	1 cut(s)	3524
BstHHI	GCGC	3 cut(s)	645, 647, 3523
BstNI	CCWGG	3 cut(s)	783, 2134, 2488
BstNSI	RCATGY	3 cut(s)	1360, 2010, 4035
BstPAI	GACNNNNGTC	1 cut(s)	3684
BstSCI	CCNGG	4 cut(s)	781, 1947, 2132, 2486
BstSFI	CTRYAG	3 cut(s)	229, 1978, 2775
BstUI	CGCG	4 cut(s)	170, 645, 1051, 4221
BstV2I	GAAGAC	2 cut(s)	372, 3717
BstX2I	RGATCY	1 cut(s)	3415
BstXI	CCANNNNNNTGG	4 cut(s)	565, 718, 1361, 1666
BstYI	RGATCY	1 cut(s)	3415
BstZ17I	GTATAC	1 cut(s)	2968
Bsu15I	ATCGAT	1 cut(s)	4200
Bsu36I	CCTNAGG	1 cut(s)	4109
BsuI	GTATCC	2 cut(s)	3001, 3106
BsuTUI	ATCGAT	1 cut(s)	4200
BtgI	CCRYGG	2 cut(s)	168, 3262
BtrI	CACGTC	1 cut(s)	33
BtsI	GCAGTG	4 cut(s)	1080, 2426, 3605, 3777
BtsIMutI	CAGTG	8 cut(s)	1080, 1446, 1528, 2069, 2426, 2478, 3605, 3777
Cac8I	GCNNGC	8 cut(s)	638, 645, 708, 1376, 2535, 2610, 2779, 4033
CfoI	GCGC	3 cut(s)	645, 647, 3523
Cfr13I	GGNCC	7 cut(s)	258, 856, 901, 1372, 2570, 3748, 4144
Cfr42I	CCGCGG	1 cut(s)	171
ClaI	ATCGAT	1 cut(s)	4200
CseI	GACGC	1 cut(s)	4227
Csp6I	GTAC	6 cut(s)	658, 685, 808, 2301, 3034, 3997
CviQI	GTAC	6 cut(s)	658, 685, 808, 2301, 3034, 3997
DinI	GGCGCC	1 cut(s)	3522
DraI	TTTAAA	1 cut(s)	2680
DraIII	CACNNNGTG	1 cut(s)	3611
EaeI	YGGCCR	1 cut(s)	3801
Eam1104I	CTCTTC	5 cut(s)	1545, 1870, 2871, 3177, 4415
EarI	CTCTTC	5 cut(s)	1545, 1870, 2871, 3177, 4415
EciI	GGCGGA	1 cut(s)	312
Eco147I	AGGCCT	3 cut(s)	1009, 2486, 2893
Eco31I	GGTCTC	3 cut(s)	3252, 4229, 4264
Eco32I	GATATC	1 cut(s)	1672
Eco47I	GGWCC	5 cut(s)	856, 901, 2570, 3748, 4144
Eco57I	CTGAAG	1 cut(s)	3479
Eco81I	CCTNAGG	1 cut(s)	4109
Eco88I	CYCGRG	2 cut(s)	2724, 4148
EcoO109I	RGGNCCY	1 cut(s)	3748
EcoRI	GAATTC	2 cut(s)	2911, 3483
EcoRII	CCWGG	3 cut(s)	781, 2132, 2486
EcoRV	GATATC	1 cut(s)	1672
EcoT22I	ATGCAT	3 cut(s)	3078, 3333, 3937
EgeI	GGCGCC	1 cut(s)	3522
EheI	GGCGCC	1 cut(s)	3522
Esp3I	CGTCTC	1 cut(s)	2721
FalI	AAGNNNNNCTT	2 cut(s)	3571, 3603
FaqI	GGGAC	1 cut(s)	1418
FauI	CCCGC	3 cut(s)	489, 991, 1767
FauNDI	CATATG	2 cut(s)	1570, 3763
FbaI	TGATCA	6 cut(s)	924, 1642, 1818, 2338, 2814, 3919
FblI	GTMKAC	3 cut(s)	2967, 3049, 3678
GlaI	GCGC	3 cut(s)	644, 646, 3522
GsaI	CCCAGC	1 cut(s)	431
HaeII	RGCGCY	1 cut(s)	3524
HapII	CCGG	3 cut(s)	899, 1423, 1948
HgaI	GACGC	1 cut(s)	4227
HhaI	GCGC	3 cut(s)	645, 647, 3523
Hin1I	GRCGYC	1 cut(s)	3521
Hin6I	GCGC	3 cut(s)	643, 645, 3521
HinP1I	GCGC	3 cut(s)	643, 645, 3521
HincII	GTYRAC	3 cut(s)	2257, 2377, 3736
HindII	GTYRAC	3 cut(s)	2257, 2377, 3736
HindIII	AAGCTT	6 cut(s)	509, 2217, 2505, 3124, 3585, 4256
HpaII	CCGG	3 cut(s)	899, 1423, 1948
Hpy99I	CGWCG	2 cut(s)	341, 548
HpyCH4IV	ACGT	6 cut(s)	32, 204, 1337, 1547, 1836, 3425
HpySE526I	ACGT	6 cut(s)	32, 204, 1337, 1547, 1836, 3425
Hsp92I	GRCGYC	1 cut(s)	3521
HspAI	GCGC	3 cut(s)	643, 645, 3521
KasI	GGCGCC	1 cut(s)	3520
Ksp22I	TGATCA	6 cut(s)	924, 1642, 1818, 2338, 2814, 3919
KspI	CCGCGG	1 cut(s)	171
LmnI	GCTCC	4 cut(s)	172, 389, 1979, 2044
MaeII	ACGT	6 cut(s)	32, 204, 1337, 1547, 1836, 3425
MaeIII	GTNAC	9 cut(s)	25, 33, 1228, 1438, 2732, 3403, 3426, 3643, 4465
MbiI	CCGCTC	1 cut(s)	215
MfeI	CAATTG	1 cut(s)	3797
MflI	RGATCY	1 cut(s)	3415
MhlI	GDGCHC	1 cut(s)	2292
Mly113I	GGCGCC	1 cut(s)	3521
MlyI	GAGTC	8 cut(s)	179, 583, 919, 1175, 1211, 3308, 3965, 4121
MmeI	TCCRAC	8 cut(s)	546, 567, 617, 1497, 1647, 3090, 3138, 3598
Mph1103I	ATGCAT	3 cut(s)	3078, 3333, 3937
MslI	CAYNNNNRTG	5 cut(s)	1355, 1359, 1412, 2558, 3579
MspA1I	CMGCKG	3 cut(s)	170, 2974, 3884
MspCI	CTTAAG	1 cut(s)	2921
MspI	CCGG	3 cut(s)	899, 1423, 1948
MspR9I	CCNGG	4 cut(s)	783, 1949, 2134, 2488
MunI	CAATTG	1 cut(s)	3797
Mva1269I	GAATGC	4 cut(s)	46, 708, 1892, 2497
MvaI	CCWGG	3 cut(s)	783, 2134, 2488
MvnI	CGCG	4 cut(s)	170, 645, 1051, 4221
NarI	GGCGCC	1 cut(s)	3521
NciI	CCSGG	1 cut(s)	1949
NcoI	CCATGG	1 cut(s)	3262
NdeI	CATATG	2 cut(s)	1570, 3763
NlaIV	GGNNCC	4 cut(s)	174, 260, 3522, 4386
NmeAIII	GCCGAG	3 cut(s)	462, 913, 1204
NmuCI	GTSAC	4 cut(s)	25, 33, 1228, 3643
NsiI	ATGCAT	3 cut(s)	3078, 3333, 3937
NspI	RCATGY	3 cut(s)	1360, 2010, 4035
NspV	TTCGAA	1 cut(s)	3180
OliI	CACNNNNGTG	1 cut(s)	3579
PaeI	GCATGC	1 cut(s)	4035
PaeR7I	CTCGAG	2 cut(s)	2724, 4148
PauI	GCGCGC	1 cut(s)	643
PceI	AGGCCT	3 cut(s)	1009, 2486, 2893
PciI	ACATGT	1 cut(s)	1356
PctI	GAATGC	4 cut(s)	46, 708, 1892, 2497
PflFI	GACNNNGTC	2 cut(s)	2372, 4221
PflMI	CCANNNNNTGG	2 cut(s)	376, 2284
PleI	GAGTC	8 cut(s)	179, 583, 918, 1174, 1210, 3307, 3964, 4121
PluTI	GGCGCC	1 cut(s)	3524
PpsI	GAGTC	8 cut(s)	179, 583, 918, 1174, 1210, 3307, 3964, 4121
PpuMI	RGGWCCY	1 cut(s)	3748
PscI	ACATGT	1 cut(s)	1356
PshAI	GACNNNNGTC	1 cut(s)	3684
PsiI	TTATAA	6 cut(s)	1026, 1037, 1131, 3015, 3474, 3551
Psp1406I	AACGTT	1 cut(s)	1836
Psp5II	RGGWCCY	1 cut(s)	3748
Psp6I	CCWGG	3 cut(s)	781, 2132, 2486
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	3 cut(s)	781, 2132, 2486
PspN4I	GGNNCC	4 cut(s)	174, 260, 3522, 4386
PspPI	GGNCC	7 cut(s)	258, 856, 901, 1372, 2570, 3748, 4144
PspPPI	RGGWCCY	1 cut(s)	3748
PspXI	VCTCGAGB	1 cut(s)	4148
PstI	CTGCAG	1 cut(s)	2779
PsuI	RGATCY	1 cut(s)	3415
PsyI	GACNNNGTC	2 cut(s)	2372, 4221
PteI	GCGCGC	1 cut(s)	643
PvuII	CAGCTG	1 cut(s)	3884
RsaI	GTAC	6 cut(s)	659, 686, 809, 2302, 3035, 3998
RsaNI	GTAC	6 cut(s)	658, 685, 808, 2301, 3034, 3997
RseI	CAYNNNNRTG	5 cut(s)	1355, 1359, 1412, 2558, 3579
SacII	CCGCGG	1 cut(s)	171
Sau96I	GGNCC	7 cut(s)	258, 856, 901, 1372, 2570, 3748, 4144
SchI	GAGTC	8 cut(s)	179, 583, 919, 1175, 1211, 3308, 3965, 4121
ScrFI	CCNGG	4 cut(s)	783, 1949, 2134, 2488
SduI	GDGCHC	1 cut(s)	2292
SfcI	CTRYAG	3 cut(s)	229, 1978, 2775
SfoI	GGCGCC	1 cut(s)	3522
Sfr274I	CTCGAG	2 cut(s)	2724, 4148
Sfr303I	CCGCGG	1 cut(s)	171
SfuI	TTCGAA	1 cut(s)	3180
SgrBI	CCGCGG	1 cut(s)	171
SinI	GGWCC	5 cut(s)	856, 901, 2570, 3748, 4144
SlaI	CTCGAG	2 cut(s)	2724, 4148
SmiMI	CAYNNNNRTG	5 cut(s)	1355, 1359, 1412, 2558, 3579
SmlI	CTYRAG	5 cut(s)	1599, 2724, 2921, 3369, 4148
SmoI	CTYRAG	5 cut(s)	1599, 2724, 2921, 3369, 4148
SpeI	ACTAGT	2 cut(s)	4087, 4264
SphI	GCATGC	1 cut(s)	4035
SseBI	AGGCCT	3 cut(s)	1009, 2486, 2893
SspDI	GGCGCC	1 cut(s)	3520
SspI	AATATT	2 cut(s)	1753, 2024
StuI	AGGCCT	3 cut(s)	1009, 2486, 2893
StyD4I	CCNGG	4 cut(s)	781, 1947, 2132, 2486
TaiI	ACGT	6 cut(s)	35, 207, 1340, 1550, 1839, 3428
TaqII	GACCGA	1 cut(s)	3662
TatI	WGTACW	3 cut(s)	807, 3033, 3996
TauI	GCSGC	3 cut(s)	136, 1496, 4083
TscAI	CASTG	8 cut(s)	1080, 1453, 1528, 2076, 2426, 2478, 3612, 3784
TseFI	GTSAC	4 cut(s)	25, 33, 1228, 3643
Tsp45I	GTSAC	4 cut(s)	25, 33, 1228, 3643
TspGWI	ACGGA	1 cut(s)	3480
TspRI	CASTG	8 cut(s)	1080, 1453, 1528, 2076, 2426, 2478, 3612, 3784
Tth111I	GACNNNGTC	2 cut(s)	2372, 4221
Van91I	CCANNNNNTGG	2 cut(s)	376, 2284
Vha464I	CTTAAG	1 cut(s)	2921
VpaK11BI	GGWCC	5 cut(s)	856, 901, 2570, 3748, 4144
XbaI	TCTAGA	2 cut(s)	158, 3688
XceI	RCATGY	3 cut(s)	1360, 2010, 4035
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XhoI	CTCGAG	2 cut(s)	2724, 4148
XmiI	GTMKAC	3 cut(s)	2967, 3049, 3678
Zsp2I	ATGCAT	3 cut(s)	3078, 3333, 3937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.