Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010296

Physical Location & Seq

Genomic Coordinates Reverse (-)

3544453 .. 3546278

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTAAGCAAAAAATGCATTATGCTGGTCCCTAATTACGAAAAGCCGCCGTGTAATCTTGTCGACACACGCACACACGTCACCGTGTGCCACCAAAGAATCCAGTTCTTCTTTCCTTACCAATCTTTCTATCTTTCCGTTTGTTTCCCGAGAAAATCACCAGAGAAAAAAAAAATAGGGGGCATTCCTCAATTTCCTTACGTTTTATACACATATATTGAAATGGCAGCGGAAGCGAACTCCAGGAGCGATACTTTGACGCTTGAGAAAGTGAGAGAGGCGTTGATTAAACAAGAAGACACCATAATTTACCGGCTGATTCAGAGAGCAAACTTCCCTTTGAATTCTCCGGCGTACGACGAGAAAGCGTTCCCATCGTTTTCTGGTTCTCTGCTTCAGTTCGTTGTTAAGGAAACAGAAGCCCTCCAATCCAAGGTTGGTATGTATGAAAATCCCGAAGAACTTCCGTTTTCGCCGGAAAGTTTACCGCCTTCATTGCTGCCGCCACCGGAAAATCCACCGGTATTGCATCCTGCTGCAGCTTCGATCAACATAAACGGAAAGATATGGGATTTCTATTTCGACGAATTGCTTCCTCTGTTTGCAGCCCCCGGTGACGATGGAAGCTATGCGTCAACTGCTTCTAATGATCTTGATTGCTTGCAGGCTATCTCTAGACGAATTCATTACGGATACTATGTTGCCGAGGTTAAGTTTAAAGATTCCCCTCAAGACTATGAGCCTGCGATTCGCGCTCAGGATAGGGAGGGTTTGATGAAATTGTTGACTTTTGTGGACGTGGAAGAGACGGTGAAGAAACGAGTTGAGAAGAAGGCAATGGTGTTTGGGCAAGAAGTAAGCCTGATGGACAATGCCAACACTAGAACTGACCAACGCAATGTAAGTGAACCATACAAGGTTGATCCATTGATAGTTTCTCGCCTCTACGGAGAATGGATAATGCCGCTCACGAAGCTCGTTCAGGTTGAGTACCTCCTTCGCCGGCTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004106 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009987 GO:0016053 GO:0016853 GO:0016866 GO:0019438 GO:0019752 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

38.61

Weight (kDa)

5.61

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CM_2	PF01817	211 - 328	3.9e-06	Chorismate mutase type II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G10870
fragaria_vesca	FvH4_2g41100
malus_domestica	MD08G1057400.v1.1 MD15G1040000.v1.1
prunus_persica	Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1 Prupe.1G393400_v2.0.a1
pyrus_communis	pycom08g04690 pycom15g03750
rosa_chinensis	RchiOBHm_Chr6g0299441
rosa_laevigata	RLG00000011431
rosa_multiflora	Rmu_sc0017526.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168680
rosa_rugosa	Rorug06G0288200 Rorug06G0288300
rosa_samantha	Rh6AG400100 Rh6BG408700 Rh6CG414200 Rh6DG401200
rosa_wichuraiana	Rw6G035020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	967
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	1 cut(s)	753
AciI	CCGC	5 cut(s)	47, 230, 488, 503, 965
AclWI	GGATC	1 cut(s)	917
AcsI	RAATTY	2 cut(s)	343, 681
AcuI	CTGAAG	1 cut(s)	380
AdeI	CACNNNGTG	1 cut(s)	87
AfaI	GTAC	2 cut(s)	356, 992
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflIII	ACRYGT	1 cut(s)	76
AgeI	ACCGGT	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	221, 343
AjiI	CACGTC	2 cut(s)	79, 799
AjnI	CCWGG	1 cut(s)	242
AluBI	AGCT	3 cut(s)	542, 627, 976
AluI	AGCT	3 cut(s)	542, 627, 976
Alw26I	GTCTC	1 cut(s)	800
AlwI	GGATC	1 cut(s)	917
Ama87I	CYCGRG	1 cut(s)	148
ApeKI	GCWGC	5 cut(s)	227, 499, 536, 539, 605
ApoI	RAATTY	2 cut(s)	343, 681
AsiGI	ACCGGT	1 cut(s)	520
Asp700I	GAANNNNTTC	3 cut(s)	368, 462, 591
AspLEI	GCGC	1 cut(s)	755
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	612
AsuHPI	GGTGA	4 cut(s)	73, 150, 626, 823
AvaI	CYCGRG	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	239, 486, 523, 551, 617
BccI	CCATC	3 cut(s)	382, 614, 859
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	686
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	800
BfaI	CTAG	3 cut(s)	675, 882, 1012
BfmI	CTRYAG	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	8 cut(s)	47, 228, 500, 503, 537, 540, 606, 965
BlsI	GCNGC	8 cut(s)	48, 229, 501, 504, 538, 541, 607, 966
Bme1390I	CCNGG	2 cut(s)	244, 612
Bme18I	GGWCC	1 cut(s)	28
BmeT110I	CYCGRG	1 cut(s)	148
BmgBI	CACGTC	2 cut(s)	79, 799
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	2 cut(s)	244, 612
BmsI	GCATC	1 cut(s)	538
BpiI	GAAGAC	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	756
BpuEI	CTTGAG	2 cut(s)	284, 714
BpuMI	CCSGG	1 cut(s)	612
BsaJI	CCNNGG	3 cut(s)	432, 610, 705
BsaWI	WCCGGW	2 cut(s)	508, 520
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse118I	RCCGGY	3 cut(s)	312, 520, 1002
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	3 cut(s)	494, 843, 904
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	3 cut(s)	432, 610, 705
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	3 cut(s)	494, 843, 904
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	5 cut(s)	239, 486, 523, 551, 617
Bsh1236I	CGCG	1 cut(s)	753
BshTI	ACCGGT	1 cut(s)	520
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	7 cut(s)	313, 350, 476, 509, 521, 612, 1003
BsiWI	CGTACG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	800
BsmBI	CGTCTC	1 cut(s)	800
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	546, 649, 922
BspACI	CCGC	5 cut(s)	47, 230, 488, 503, 965
BspCNI	CTCAG	1 cut(s)	769
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	1 cut(s)	30
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	1 cut(s)	917
BsrBI	CCGCTC	1 cut(s)	967
BsrDI	GCAATG	3 cut(s)	494, 843, 904
BsrFI	RCCGGY	3 cut(s)	312, 520, 1002
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	3 cut(s)	312, 520, 1002
BssECI	CCNNGG	3 cut(s)	432, 610, 705
BssMI	GATC	3 cut(s)	546, 649, 922
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	85, 811
Bst6I	CTCTTC	1 cut(s)	798
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	4 cut(s)	662, 666, 744, 1004
BstDEI	CTNAG	1 cut(s)	756
BstF5I	GGATG	1 cut(s)	529
BstFNI	CGCG	1 cut(s)	753
BstHHI	GCGC	1 cut(s)	755
BstKTI	GATC	3 cut(s)	549, 652, 925
BstMAI	GTCTC	1 cut(s)	800
BstMBI	GATC	3 cut(s)	546, 649, 922
BstMWI	GCNNNNNNNGC	6 cut(s)	15, 233, 496, 638, 752, 973
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	242, 610
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	753
BstV1I	GCAGC	5 cut(s)	239, 486, 523, 551, 617
BstV2I	GAAGAC	1 cut(s)	303
BsuI	GTATCC	1 cut(s)	686
BtrI	CACGTC	2 cut(s)	79, 799
BtsCI	GGATG	1 cut(s)	529
Cac8I	GCNNGC	4 cut(s)	662, 666, 744, 1004
CfoI	GCGC	1 cut(s)	755
Cfr10I	RCCGGY	3 cut(s)	312, 520, 1002
Cfr13I	GGNCC	1 cut(s)	28
CseI	GACGC	2 cut(s)	268, 621
Csp6I	GTAC	2 cut(s)	355, 991
CspAI	ACCGGT	1 cut(s)	520
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviQI	GTAC	2 cut(s)	355, 991
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	3 cut(s)	548, 651, 924
DpnII	GATC	3 cut(s)	546, 649, 922
DraI	TTTAAA	1 cut(s)	718
DraIII	CACNNNGTG	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	798
EarI	CTCTTC	1 cut(s)	798
Eco130I	CCWWGG	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	380
Eco88I	CYCGRG	1 cut(s)	148
EcoRI	GAATTC	2 cut(s)	343, 681
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	800
FaqI	GGGAC	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	8 cut(s)	47, 228, 500, 503, 537, 540, 606, 965
FokI	GGATG	1 cut(s)	516
Fsp4HI	GCNGC	8 cut(s)	47, 228, 500, 503, 537, 540, 606, 965
FspBI	CTAG	3 cut(s)	675, 882, 1012
GlaI	GCGC	1 cut(s)	754
GluI	GCNGC	8 cut(s)	47, 228, 500, 503, 537, 540, 606, 965
GsuI	CTGGAG	1 cut(s)	226
HapII	CCGG	7 cut(s)	313, 350, 476, 509, 521, 612, 1003
HgaI	GACGC	2 cut(s)	268, 621
HhaI	GCGC	1 cut(s)	755
Hin6I	GCGC	1 cut(s)	753
HinP1I	GCGC	1 cut(s)	753
HincII	GTYRAC	3 cut(s)	64, 636, 786
HindII	GTYRAC	3 cut(s)	64, 636, 786
HinfI	GANTC	4 cut(s)	99, 319, 722, 748
HpaII	CCGG	7 cut(s)	313, 350, 476, 509, 521, 612, 1003
HphI	GGTGA	4 cut(s)	73, 150, 626, 823
Hpy166II	GTNNAC	6 cut(s)	64, 485, 636, 786, 796, 908
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	7 cut(s)	148, 455, 653, 675, 731, 758, 970
Hpy8I	GTNNAC	6 cut(s)	64, 485, 636, 786, 796, 908
Hpy99I	CGWCG	2 cut(s)	362, 587
HpyAV	CCTTC	3 cut(s)	501, 826, 1007
HpyCH4III	ACNGT	2 cut(s)	85, 811
HpyCH4IV	ACGT	3 cut(s)	78, 201, 798
HpyCH4V	TGCA	5 cut(s)	18, 529, 539, 605, 664
HpyF10VI	GCNNNNNNNGC	6 cut(s)	15, 233, 496, 638, 752, 973
HpyF3I	CTNAG	1 cut(s)	756
HpySE526I	ACGT	3 cut(s)	78, 201, 798
HspAI	GCGC	1 cut(s)	753
KroI	GCCGGC	1 cut(s)	1002
KroNI	GCCGGC	1 cut(s)	1004
Kzo9I	GATC	3 cut(s)	546, 649, 922
LmnI	GCTCC	1 cut(s)	246
Lsp1109I	GCAGC	5 cut(s)	239, 486, 523, 551, 617
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	3 cut(s)	675, 882, 1012
MaeII	ACGT	3 cut(s)	78, 201, 798
MaeIII	GTNAC	2 cut(s)	79, 614
MalI	GATC	3 cut(s)	548, 651, 924
MbiI	CCGCTC	1 cut(s)	967
MboI	GATC	3 cut(s)	546, 649, 922
MboII	GAAGA	6 cut(s)	100, 308, 470, 815, 826, 841
MluCI	AATT	7 cut(s)	34, 191, 306, 343, 587, 681, 779
MnlI	CCTC	9 cut(s)	198, 271, 434, 606, 700, 738, 760, 953, 1004
Mph1103I	ATGCAT	1 cut(s)	20
MroNI	GCCGGC	1 cut(s)	1002
MroXI	GAANNNNTTC	3 cut(s)	368, 462, 591
MseI	TTAA	4 cut(s)	288, 408, 711, 717
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	7 cut(s)	313, 350, 476, 509, 521, 612, 1003
MspR9I	CCNGG	2 cut(s)	244, 612
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	1 cut(s)	244
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	6 cut(s)	15, 233, 496, 638, 752, 973
NaeI	GCCGGC	1 cut(s)	1004
NciI	CCSGG	1 cut(s)	612
NdeII	GATC	3 cut(s)	546, 649, 922
NgoMIV	GCCGGC	1 cut(s)	1002
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	2 cut(s)	79, 614
NsiI	ATGCAT	1 cut(s)	20
PctI	GAATGC	1 cut(s)	183
PdiI	GCCGGC	1 cut(s)	1004
PdmI	GAANNNNTTC	3 cut(s)	368, 462, 591
PfeI	GAWTC	4 cut(s)	99, 319, 722, 748
Pfl23II	CGTACG	1 cut(s)	354
PfoI	TCCNGGA	1 cut(s)	242
PinAI	ACCGGT	1 cut(s)	520
PkrI	GCNGC	8 cut(s)	48, 229, 501, 504, 538, 541, 607, 966
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspLI	CGTACG	1 cut(s)	354
PspN4I	GGNNCC	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	541
RsaI	GTAC	2 cut(s)	356, 992
RsaNI	GTAC	2 cut(s)	355, 991
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	4 cut(s)	288, 408, 711, 717
SatI	GCNGC	8 cut(s)	47, 228, 500, 503, 537, 540, 606, 965
Sau3AI	GATC	3 cut(s)	546, 649, 922
Sau96I	GGNCC	1 cut(s)	28
ScrFI	CCNGG	2 cut(s)	244, 612
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	263, 729
SmoI	CTYRAG	2 cut(s)	263, 729
Sse9I	AATT	7 cut(s)	34, 191, 306, 343, 587, 681, 779
SsiI	CCGC	5 cut(s)	47, 230, 488, 503, 965
SspMI	CTAG	3 cut(s)	675, 882, 1012
StyD4I	CCNGG	2 cut(s)	242, 610
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	85, 811
TaiI	ACGT	3 cut(s)	81, 204, 801
TaqI	TCGA	3 cut(s)	63, 545, 582
TasI	AATT	7 cut(s)	34, 191, 306, 343, 587, 681, 779
TauI	GCSGC	3 cut(s)	49, 505, 967
TfiI	GAWTC	4 cut(s)	99, 319, 722, 748
Tru1I	TTAA	4 cut(s)	288, 408, 711, 717
Tru9I	TTAA	4 cut(s)	288, 408, 711, 717
TseFI	GTSAC	2 cut(s)	79, 614
TseI	GCWGC	5 cut(s)	227, 499, 536, 539, 605
Tsp45I	GTSAC	2 cut(s)	79, 614
TspDTI	ATGAA	4 cut(s)	462, 483, 674, 791
TspGWI	ACGGA	5 cut(s)	127, 456, 573, 705, 963
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	343, 681
XbaI	TCTAGA	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	63
XmnI	GAANNNNTTC	3 cut(s)	368, 462, 591
XspI	CTAG	3 cut(s)	675, 882, 1012
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.