Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0011531

Physical Location & Seq

Genomic Coordinates Reverse (-)

3564779 .. 3566131

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTCATACCCTTAACAAGCAAAAGGGCTGATGATCGTGATCAGGTTGTAGACAGTGTTCAAGAAGACTTGCAACGTTTGAGGAAAGAGAATGAAATCCTAAGATACCTGCTTCAACACTTGAACACCAAGCGCTCAACACATGAGCAGCAGCAGCTGCGCCAAATGCATATCCAACAACAACCGTGTGATCATCGACATATCATGACCACGAATATCAACAGCGCGATTACGAGCAAGAGACAGAGAACTGATGAGCATCCCGATCAGTTTCCGGCATCCCACAATAAGACATCACAGGTCCTCGTGAAAACCGATTCTAAAGACAACAGCCTTGTAAGTCAAGTCCTCCCTTATAATATTGTGAAAGATGGATATCAATGGAGGAAATATGGACAGAAGGTCACCAAAGACAACCCTTCATCCCCTCGAGCTTATTTCAGGTGTTCCTTCGCTCCTCGATGCCCTGTCAAAAAGAAGGTACAGAGGTACATAGAGGATGATTCCATCCTCGTGGCGACATACGAAGGAGAGCACAACCATGACGCCATCAATGATTCTGTACCATTTGGACAATTTTCATGTTCACATAAGAACGTAATTGTGCCCGTTAATTTTCCTTCAAGTGGTATCGGAACTAATAATGACGTGATTAATATAAGTCCCTCTCTGCCGGAGCCTGTAACGCTCGATCTTAGTCTCTCGGGATCCAGTAATCAAGAAAATGGAGGATTGGGAAGCCCTCAAAGCATGGTTAGCCCCGGAAGAGTTGAGGATTACGTTGCTTCGTTAACCAAGGATCCTAATTTCACACAAACTTTAGCTGCTGCAGTTGCACGTTCGATTGCAAGACCTGCAAATATCAAATTCATAGATTGGAGCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002237 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031347 GO:0042221 GO:0042493 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0098542 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

296

Amino Acids

33.21

Weight (kDa)

8.59

Isoelectric Point (pI)

64.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	123 - 182	6.6e-23	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011531)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g41070 FvH4_2g41070 FvH4_2g41070
malus_domestica	MD00G1143600.v1.1 MD15G1039600.v1.1
prunus_persica	Prupe.1G393100_v2.0.a1
pyrus_communis	pycom08g04720 pycom08g04730 pycom08g04740 pycom15g03700
rosa_chinensis	RchiOBHm_Chr6g0299481
rosa_laevigata	RLG00000011428
rosa_multiflora	Rmu_sc0001184.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168640
rosa_rugosa	Rorug06G0289100
rosa_samantha	Rh6AG400400 Rh6BG409100 Rh6CG414600 Rh6DG401500
rosa_wichuraiana	Rw6G035050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc36I	ACCTGC	2 cut(s)	117, 862
AccBSI	CCGCTC	1 cut(s)	882
AccI	GTMKAC	1 cut(s)	51
AccII	CGCG	1 cut(s)	227
AciI	CCGC	1 cut(s)	882
AclI	AACGTT	1 cut(s)	76
AclWI	GGATC	4 cut(s)	702, 715, 794, 807
AcsI	RAATTY	1 cut(s)	866
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	3 cut(s)	483, 491, 564
AfeI	AGCGCT	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	62, 116, 124, 624
AhdI	GACNNNNNGTC	1 cut(s)	401
AjiI	CACGTC	1 cut(s)	649
AluBI	AGCT	3 cut(s)	157, 434, 824
AluI	AGCT	3 cut(s)	157, 434, 824
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	235, 704
AlwI	GGATC	4 cut(s)	702, 715, 794, 807
AlwNI	CAGNNNCTG	1 cut(s)	157
Ama87I	CYCGRG	2 cut(s)	429, 703
Aor51HI	AGCGCT	1 cut(s)	134
ApeKI	GCWGC	6 cut(s)	148, 151, 154, 157, 824, 827
ApoI	RAATTY	1 cut(s)	866
AseI	ATTAAT	1 cut(s)	654
AspLEI	GCGC	3 cut(s)	135, 162, 227
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	762
AsuHPI	GGTGA	1 cut(s)	397
AvaI	CYCGRG	2 cut(s)	429, 703
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	609
BaeI	ACNNNNGTAYC	2 cut(s)	473, 506
BamHI	GGATCC	2 cut(s)	707, 799
BauI	CACGAG	2 cut(s)	305, 512
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	6 cut(s)	144, 160, 163, 166, 811, 814
BccI	CCATC	3 cut(s)	365, 515, 557
BclI	TGATCA	2 cut(s)	40, 190
BcnI	CCSGG	1 cut(s)	762
BcoDI	GTCTC	2 cut(s)	235, 704
BfmI	CTRYAG	1 cut(s)	828
BfoI	RGCGCY	1 cut(s)	136
BfuAI	ACCTGC	2 cut(s)	117, 862
BisI	GCNGC	6 cut(s)	149, 152, 155, 158, 825, 828
BlsI	GCNGC	6 cut(s)	150, 153, 156, 159, 826, 829
Bme1390I	CCNGG	1 cut(s)	762
Bme18I	GGWCC	1 cut(s)	301
BmeRI	GACNNNNNGTC	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	429, 703
BmgBI	CACGTC	1 cut(s)	649
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	3 cut(s)	678, 709, 801
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	3 cut(s)	268, 287, 452
BpiI	GAAGAC	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	762
BsaBI	GATNNNNATC	3 cut(s)	39, 258, 375
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	2 cut(s)	760, 795
Bsc4I	CCNNNNNNNGG	1 cut(s)	626
Bse1I	ACTGG	1 cut(s)	711
Bse8I	GATNNNNATC	3 cut(s)	39, 258, 375
BseDI	CCNNGG	2 cut(s)	760, 795
BseGI	GGATG	5 cut(s)	259, 278, 422, 505, 507
BseJI	GATNNNNATC	3 cut(s)	39, 258, 375
BseLI	CCNNNNNNNGG	1 cut(s)	626
BseNI	ACTGG	1 cut(s)	711
BseRI	GAGGAG	1 cut(s)	447
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	6 cut(s)	144, 160, 163, 166, 811, 814
Bsh1236I	CGCG	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	2 cut(s)	429, 703
BsiSI	CCGG	3 cut(s)	275, 674, 762
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	1 cut(s)	626
BsmAI	GTCTC	2 cut(s)	235, 704
BsmFI	GGGAC	1 cut(s)	648
BsoBI	CYCGRG	2 cut(s)	429, 703
Bsp1286I	GDGCHC	2 cut(s)	537, 609
Bsp143I	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
BspACI	CCGC	1 cut(s)	882
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	678, 709, 801
BspMAI	CTGCAG	1 cut(s)	832
BspMI	ACCTGC	2 cut(s)	117, 862
BspPI	GGATC	4 cut(s)	702, 715, 794, 807
BsrBI	CCGCTC	1 cut(s)	882
BsrI	ACTGG	1 cut(s)	711
BssECI	CCNNGG	2 cut(s)	760, 795
BssMI	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
BssNI	GRCGYC	1 cut(s)	546
BssSI	CACGAG	2 cut(s)	305, 512
BssT1I	CCWWGG	1 cut(s)	795
Bst2BI	CACGAG	2 cut(s)	305, 512
Bst4CI	ACNGT	2 cut(s)	56, 186
Bst6I	CTCTTC	1 cut(s)	760
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	2 cut(s)	157, 854
BstDEI	CTNAG	2 cut(s)	101, 695
BstEII	GGTNACC	1 cut(s)	403
BstF5I	GGATG	5 cut(s)	259, 278, 422, 505, 507
BstFNI	CGCG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	3 cut(s)	135, 162, 227
BstKTI	GATC	7 cut(s)	37, 43, 193, 268, 694, 710, 802
BstMAI	GTCTC	2 cut(s)	235, 704
BstMBI	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
BstMWI	GCNNNNNNNGC	8 cut(s)	154, 157, 166, 685, 747, 756, 833, 854
BstPI	GGTNACC	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	760
BstSFI	CTRYAG	1 cut(s)	828
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	6 cut(s)	144, 160, 163, 166, 811, 814
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	707, 799
BstXI	CCANNNNNNTGG	1 cut(s)	514
BstYI	RGATCY	2 cut(s)	707, 799
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	5 cut(s)	259, 278, 422, 505, 507
BtsIMutI	CAGTG	1 cut(s)	61
BveI	ACCTGC	2 cut(s)	117, 862
CaiI	CAGNNNCTG	1 cut(s)	157
CciI	TCATGA	1 cut(s)	204
CfoI	GCGC	3 cut(s)	135, 162, 227
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	1 cut(s)	554
Csp6I	GTAC	3 cut(s)	482, 490, 563
CviAII	CATG	5 cut(s)	143, 205, 542, 582, 751
CviJI	RGCY	8 cut(s)	29, 157, 333, 434, 679, 741, 759, 824
CviKI_1	RGCY	8 cut(s)	29, 157, 333, 434, 679, 741, 759, 824
CviQI	GTAC	3 cut(s)	482, 490, 563
DdeI	CTNAG	2 cut(s)	101, 695
DpnI	GATC	7 cut(s)	36, 42, 192, 267, 693, 709, 801
DpnII	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
DriI	GACNNNNNGTC	1 cut(s)	401
Eam1104I	CTCTTC	1 cut(s)	760
Eam1105I	GACNNNNNGTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	760
Eco130I	CCWWGG	1 cut(s)	795
Eco32I	GATATC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	301
Eco47III	AGCGCT	1 cut(s)	134
Eco88I	CYCGRG	2 cut(s)	429, 703
Eco91I	GGTNACC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	795
EcoT22I	ATGCAT	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	795
FaeI	CATG	5 cut(s)	146, 208, 545, 585, 754
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	5 cut(s)	142, 204, 541, 581, 750
FbaI	TGATCA	2 cut(s)	40, 190
FblI	GTMKAC	1 cut(s)	51
Fnu4HI	GCNGC	6 cut(s)	149, 152, 155, 158, 825, 828
FokI	GGATG	5 cut(s)	246, 265, 409, 494, 512
Fsp4HI	GCNGC	6 cut(s)	149, 152, 155, 158, 825, 828
GlaI	GCGC	3 cut(s)	134, 161, 226
GluI	GCNGC	6 cut(s)	149, 152, 155, 158, 825, 828
HaeII	RGCGCY	1 cut(s)	136
HapII	CCGG	3 cut(s)	275, 674, 762
HgaI	GACGC	1 cut(s)	554
HhaI	GCGC	3 cut(s)	135, 162, 227
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	5 cut(s)	146, 208, 545, 585, 754
Hin6I	GCGC	3 cut(s)	133, 160, 225
HinP1I	GCGC	3 cut(s)	133, 160, 225
HincII	GTYRAC	1 cut(s)	792
HindII	GTYRAC	1 cut(s)	792
HinfI	GANTC	3 cut(s)	317, 503, 557
HpaI	GTTAAC	1 cut(s)	792
HpaII	CCGG	3 cut(s)	275, 674, 762
HphI	GGTGA	1 cut(s)	397
Hpy166II	GTNNAC	3 cut(s)	52, 587, 792
Hpy188I	TCNGA	1 cut(s)	635
Hpy188III	TCNNGA	7 cut(s)	38, 62, 205, 263, 307, 705, 719
Hpy8I	GTNNAC	3 cut(s)	52, 587, 792
HpyAV	CCTTC	6 cut(s)	394, 429, 460, 472, 521, 630
HpyCH4III	ACNGT	2 cut(s)	56, 186
HpyCH4IV	ACGT	5 cut(s)	76, 597, 648, 780, 838
HpyCH4V	TGCA	6 cut(s)	73, 169, 830, 836, 848, 857
HpyF10VI	GCNNNNNNNGC	8 cut(s)	154, 157, 166, 685, 747, 756, 833, 854
HpyF3I	CTNAG	2 cut(s)	101, 695
HpySE526I	ACGT	5 cut(s)	76, 597, 648, 780, 838
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	5 cut(s)	146, 208, 545, 585, 754
HspAI	GCGC	3 cut(s)	133, 160, 225
Ksp22I	TGATCA	2 cut(s)	40, 190
KspAI	GTTAAC	1 cut(s)	792
Kzo9I	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
LmnI	GCTCC	3 cut(s)	460, 676, 879
Lsp1109I	GCAGC	6 cut(s)	144, 160, 163, 166, 811, 814
LweI	GCATC	3 cut(s)	268, 287, 452
MaeII	ACGT	5 cut(s)	76, 597, 648, 780, 838
MaeIII	GTNAC	2 cut(s)	403, 682
MalI	GATC	7 cut(s)	36, 42, 192, 267, 693, 709, 801
MbiI	CCGCTC	1 cut(s)	882
MboI	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
MboII	GAAGA	2 cut(s)	77, 777
MflI	RGATCY	2 cut(s)	707, 799
MhlI	GDGCHC	2 cut(s)	537, 609
MluCI	AATT	5 cut(s)	575, 600, 613, 805, 866
MmeI	TCCRAC	1 cut(s)	199
Mph1103I	ATGCAT	1 cut(s)	171
MseI	TTAA	4 cut(s)	14, 612, 654, 791
MslI	CAYNNNNRTG	2 cut(s)	512, 540
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	3 cut(s)	275, 674, 762
MspR9I	CCNGG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	8 cut(s)	154, 157, 166, 685, 747, 756, 833, 854
NciI	CCSGG	1 cut(s)	762
NdeII	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
NlaIII	CATG	5 cut(s)	146, 208, 545, 585, 754
NlaIV	GGNNCC	3 cut(s)	678, 709, 801
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	171
PaeR7I	CTCGAG	1 cut(s)	429
PagI	TCATGA	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	317, 503, 557
PkrI	GCNGC	6 cut(s)	150, 153, 156, 159, 826, 829
PpuMI	RGGWCCY	1 cut(s)	301
PshBI	ATTAAT	1 cut(s)	654
PsiI	TTATAA	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	403
PspN4I	GGNNCC	3 cut(s)	678, 709, 801
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PspXI	VCTCGAGB	1 cut(s)	429
PsrI	GAACNNNNNNTAC	2 cut(s)	42, 74
PstI	CTGCAG	1 cut(s)	832
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	707, 799
PvuII	CAGCTG	1 cut(s)	157
RsaI	GTAC	3 cut(s)	483, 491, 564
RsaNI	GTAC	3 cut(s)	482, 490, 563
RseI	CAYNNNNRTG	2 cut(s)	512, 540
SaqAI	TTAA	4 cut(s)	14, 612, 654, 791
SatI	GCNGC	6 cut(s)	149, 152, 155, 158, 825, 828
Sau3AI	GATC	7 cut(s)	34, 40, 190, 265, 691, 707, 799
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	2 cut(s)	537, 609
SfaNI	GCATC	3 cut(s)	268, 287, 452
SfcI	CTRYAG	1 cut(s)	828
Sfr274I	CTCGAG	1 cut(s)	429
SinI	GGWCC	1 cut(s)	301
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	512, 540
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	5 cut(s)	575, 600, 613, 805, 866
SsiI	CCGC	1 cut(s)	882
SspI	AATATT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	1 cut(s)	795
TaaI	ACNGT	2 cut(s)	56, 186
TaiI	ACGT	5 cut(s)	79, 600, 651, 783, 841
TaqI	TCGA	5 cut(s)	196, 430, 460, 690, 842
TasI	AATT	5 cut(s)	575, 600, 613, 805, 866
TfiI	GAWTC	3 cut(s)	317, 503, 557
Tru1I	TTAA	4 cut(s)	14, 612, 654, 791
Tru9I	TTAA	4 cut(s)	14, 612, 654, 791
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	6 cut(s)	148, 151, 154, 157, 824, 827
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	4 cut(s)	108, 411, 570, 859
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	301
VspI	ATTAAT	1 cut(s)	654
XapI	RAATTY	1 cut(s)	866
XhoI	CTCGAG	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.