pycom08g07960

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012416
Physical Location & Seq
Forward (+)
6414813 .. 6417391
2579 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1059 bp
ATGGCGGATCTGTACGGATCAGCGCCGGACTCGGAAGAAATATCGAACATTATCAGCGAGCTCCTTCACGGTCGCGGCTCCTCCGCTTCCTCAGCCTATTCTAGCATGCCCTTTAAGCCCACTTACATGCACCTGCTGCATTCGTCAGTGCCGCTGCCACTCCAGGCGGCGACGCCGTCCCAGGTCTTGATTCCGGAGGCCAGGCATGAGGATCATCGGCGGTTTGCTCAATTGGTGGACCGGTCTGGCTCGGACCAGCGAGTAGTGGGAGGAAATTCGAACTCTGCTCGTATGTTGGAGTCGTCGTCCGGGTTCCACTTCTCCGATTCCAGTGGCTACTTCACGGCGGAGGTGAAAGAAGGTATGGAGTCTGATGGGAGGAGGATTTCGTCTGAGAATTATCTCGGCGACTTTAGCTGTGACAGTGAGGGTCTGGAGGAGGCTCCGGACGTGCAATTGAACTCAGCGCCTCCGCGGAGTTCATCGAAGAGGAGCAGAGCTGCCGACGTCCATAATATGTCGGAAAAGAGGAGGAGGAGTAGGATTAACGAAAAGATGAAAGCGTTGCTGAACCTGATTCCGAATTCTAACAAGGCTTCGATGCTGGATGAAGCAATCGAGTATTTGAAGCAGCTCCAGCTTCAGGTACAGATGTTAACGATGAGAAATGGATTGAGTTTGCATCCAATGTGCATACCAGGAGTCATGCAGCCTATGCAGTTGCCTCATATGGGATTGAGCTTTGAAGAAGGAAGTAATAAATTTCCAAAATCCAGCAAAGGAATAAGCCCTTTTTACGGGAGTGGAGAGAACTCAATGCAATCTGCTTTCAATTTATCCGCCGGATACATGATCTCAAATCCACCAATGGTCAGACCCTCAGTTGCAAATGTCCCGACTTCAGAACCCATATTTGGTTTTGAACCATCGGTTCAAGCTCACTACAGACTCTTCAGTGTCCCCTCATCCTCTAAGGAACTCTTCAGTGACGGTGAACCACAATCAAAAGTAGATACCATTAGGACAGGGAAAAACTCTTCATCGGACGTTGATGTATGA

Protein Analysis

353

Amino Acids

38.54

Weight (kDa)

5.95

Isoelectric Point (pI)

69.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 170 - 213 1.9e-09 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67110 AT5G67110 AT5G67110
fragaria_vesca FvH4_2g34100
malus_domestica MD15G1079800.v1.1
prunus_persica Prupe.1G432800_v2.0.a1
pyrus_communis pycom08g07960 pycom15g07430
rosa_chinensis RchiOBHm_Chr6g0308251
rosa_laevigata RLG00000010654
rosa_multiflora Rmu_sc0012549.1_g000001 Rmu_ssc0000355.1_g000007
rosa_roxburghii Rroxscaffold_7G00160320
rosa_rugosa Rorug06G0365400
rosa_samantha Rh6AG474400 Rh6BG485100 Rh6CG490100 Rh6DG476500
rosa_wichuraiana Rw6G041380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 141
AatII GACGTC 1 cut(s) 510
Acc36I ACCTGC 1 cut(s) 141
AccII CGCG 2 cut(s) 75, 475
AccIII TCCGGA 2 cut(s) 193, 445
AclWI GGATC 3 cut(s) 15, 25, 219
AcsI RAATTY 3 cut(s) 274, 583, 761
AcuI CTGAAG 4 cut(s) 626, 885, 937, 967
AcyI GRCGYC 2 cut(s) 173, 507
AfaI GTAC 2 cut(s) 14, 648
AfiI CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
AgeI ACCGGT 1 cut(s) 240
AgsI TTSAA 6 cut(s) 460, 628, 746, 832, 923, 935
AjiI CACGTC 1 cut(s) 451
AjnI CCWGG 4 cut(s) 162, 180, 200, 697
AjuI GAANNNNNNNTTGG 2 cut(s) 897, 929
AluBI AGCT 7 cut(s) 61, 417, 500, 634, 640, 741, 938
AluI AGCT 7 cut(s) 61, 417, 500, 634, 640, 741, 938
Alw21I GWGCWC 1 cut(s) 63
AlwI GGATC 3 cut(s) 15, 25, 219
Aor13HI TCCGGA 2 cut(s) 193, 445
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 5 cut(s) 136, 154, 500, 631, 709
ApoI RAATTY 3 cut(s) 274, 583, 761
AsiGI ACCGGT 1 cut(s) 240
AspLEI GCGC 2 cut(s) 25, 469
AspS9I GGNCC 2 cut(s) 238, 253
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 2 cut(s) 364, 1004
AsuII TTCGAA 1 cut(s) 278
AvaII GGWCC 2 cut(s) 238, 253
BaeI ACNNNNGTAYC 2 cut(s) 638, 671
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 5 cut(s) 123, 141, 487, 643, 721
BccI CCATC 2 cut(s) 368, 934
BceAI ACGGC 2 cut(s) 160, 360
BciT130I CCWGG 4 cut(s) 164, 182, 202, 699
BciVI GTATCC 1 cut(s) 839
BcnI CCSGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 943
BfoI RGCGCY 2 cut(s) 26, 470
BfuAI ACCTGC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 839
BisI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
BlsI GCNGC 8 cut(s) 77, 138, 153, 156, 169, 502, 633, 711
Bme1390I CCNGG 5 cut(s) 164, 182, 202, 310, 699
Bme18I GGWCC 2 cut(s) 238, 253
BmgBI CACGTC 1 cut(s) 451
BmgT120I GGNCC 2 cut(s) 238, 253
BmiI GGNNCC 3 cut(s) 79, 314, 444
BmrFI CCNGG 5 cut(s) 164, 182, 202, 310, 699
BmsI GCATC 2 cut(s) 591, 691
BpmI CTGGAG 3 cut(s) 146, 455, 620
Bpu10I CCTNAGC 1 cut(s) 91
Bpu14I TTCGAA 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 310
BsaHI GRCGYC 2 cut(s) 173, 507
BsaJI CCNNGG 2 cut(s) 180, 473
BsaWI WCCGGW 3 cut(s) 193, 240, 445
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 523, 553
Bsc4I CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 330
BseAI TCCGGA 2 cut(s) 193, 445
BseBI CCWGG 4 cut(s) 164, 182, 202, 699
BseDI CCNNGG 2 cut(s) 180, 473
BseGI GGATG 3 cut(s) 613, 682, 965
BseLI CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
BseMII CTCAG 4 cut(s) 105, 384, 477, 894
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 7 cut(s) 70, 394, 452, 505, 544, 547, 550
BseXI GCAGC 5 cut(s) 123, 141, 487, 643, 721
Bsh1236I CGCG 2 cut(s) 75, 475
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 1 cut(s) 200
BshTI ACCGGT 1 cut(s) 240
BsiEI CGRYCG 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
BslFI GGGAC 3 cut(s) 163, 878, 944
BslI CCNNNNNNNGG 4 cut(s) 643, 731, 797, 914
BsmFI GGGAC 3 cut(s) 163, 878, 944
BsmI GAATGC 1 cut(s) 139
BsnI GGCC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 63
Bsp13I TCCGGA 2 cut(s) 193, 445
Bsp143I GATC 4 cut(s) 7, 17, 211, 852
BspANI GGCC 1 cut(s) 200
BspCNI CTCAG 4 cut(s) 104, 385, 476, 893
BspEI TCCGGA 2 cut(s) 193, 445
BspFNI CGCG 2 cut(s) 75, 475
BspLI GGNNCC 3 cut(s) 79, 314, 444
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 3 cut(s) 15, 25, 219
BspT104I TTCGAA 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 180, 473
BssMI GATC 4 cut(s) 7, 17, 211, 852
BssNI GRCGYC 2 cut(s) 173, 507
Bst2UI CCWGG 4 cut(s) 164, 182, 202, 699
Bst4CI ACNGT 3 cut(s) 71, 425, 992
Bst6I CTCTTC 4 cut(s) 482, 956, 986, 1042
BstACI GRCGYC 2 cut(s) 173, 507
BstAPI GCANNNNNTGC 2 cut(s) 136, 715
BstBI TTCGAA 1 cut(s) 278
BstC8I GCNNGC 2 cut(s) 59, 107
BstDEI CTNAG 5 cut(s) 91, 393, 463, 880, 972
BstDSI CCRYGG 1 cut(s) 473
BstF5I GGATG 3 cut(s) 613, 682, 965
BstFNI CGCG 2 cut(s) 75, 475
BstH2I RGCGCY 2 cut(s) 26, 470
BstHHI GCGC 2 cut(s) 25, 469
BstKTI GATC 4 cut(s) 10, 20, 214, 855
BstMBI GATC 4 cut(s) 7, 17, 211, 852
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 6 cut(s) 92, 115, 136, 414, 637, 715
BstNI CCWGG 4 cut(s) 164, 182, 202, 699
BstNSI RCATGY 2 cut(s) 109, 130
BstSCI CCNGG 5 cut(s) 162, 180, 200, 308, 697
BstSFI CTRYAG 1 cut(s) 943
BstUI CGCG 2 cut(s) 75, 475
BstV1I GCAGC 5 cut(s) 123, 141, 487, 643, 721
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 839
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 473
BtrI CACGTC 1 cut(s) 451
BtsCI GGATG 3 cut(s) 613, 682, 965
BtsIMutI CAGTG 5 cut(s) 153, 337, 430, 961, 991
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 59, 107
CfoI GCGC 2 cut(s) 25, 469
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 238, 253
Cfr42I CCGCGG 1 cut(s) 476
CseI GACGC 1 cut(s) 181
Csp6I GTAC 2 cut(s) 13, 647
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 5 cut(s) 106, 127, 206, 706, 850
CviQI GTAC 2 cut(s) 13, 647
DdeI CTNAG 5 cut(s) 91, 393, 463, 880, 972
DpnI GATC 4 cut(s) 9, 19, 213, 854
DpnII GATC 4 cut(s) 7, 17, 211, 852
Eam1104I CTCTTC 4 cut(s) 482, 956, 986, 1042
EarI CTCTTC 4 cut(s) 482, 956, 986, 1042
EciI GGCGGA 3 cut(s) 20, 362, 829
Ecl136II GAGCTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 63
Eco47I GGWCC 2 cut(s) 238, 253
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 4 cut(s) 626, 885, 937, 967
EcoICRI GAGCTC 1 cut(s) 61
EcoRI GAATTC 1 cut(s) 583
EcoRII CCWGG 4 cut(s) 162, 180, 200, 697
EcoT38I GRGCYC 1 cut(s) 63
FaeI CATG 5 cut(s) 109, 130, 209, 709, 853
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FaqI GGGAC 3 cut(s) 163, 878, 944
FatI CATG 5 cut(s) 105, 126, 205, 705, 849
FauNDI CATATG 1 cut(s) 729
Fnu4HI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
FokI GGATG 3 cut(s) 620, 669, 952
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
FspBI CTAG 1 cut(s) 102
GlaI GCGC 2 cut(s) 24, 468
GluI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
GsuI CTGGAG 3 cut(s) 146, 455, 620
HaeII RGCGCY 2 cut(s) 26, 470
HaeIII GGCC 1 cut(s) 200
HapII CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 25, 469
Hin1I GRCGYC 2 cut(s) 173, 507
Hin1II CATG 5 cut(s) 109, 130, 209, 709, 853
Hin6I GCGC 2 cut(s) 23, 467
HinP1I GCGC 2 cut(s) 23, 467
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 8 cut(s) 29, 190, 299, 326, 368, 577, 702, 948
HpaI GTTAAC 1 cut(s) 657
HpaII CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
HphI GGTGA 2 cut(s) 364, 1004
Hpy166II GTNNAC 3 cut(s) 238, 657, 995
Hpy188III TCNNGA 5 cut(s) 187, 194, 434, 446, 895
Hpy8I GTNNAC 3 cut(s) 238, 657, 995
Hpy99I CGWCG 3 cut(s) 175, 307, 509
HpyAV CCTTC 3 cut(s) 74, 353, 743
HpyCH4III ACNGT 3 cut(s) 71, 425, 992
HpyCH4IV ACGT 3 cut(s) 450, 507, 1047
HpyCH4V TGCA 9 cut(s) 130, 139, 454, 682, 693, 709, 718, 820, 887
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 115, 136, 414, 637, 715
HpyF3I CTNAG 5 cut(s) 91, 393, 463, 880, 972
HpySE526I ACGT 3 cut(s) 450, 507, 1047
Hsp92I GRCGYC 2 cut(s) 173, 507
Hsp92II CATG 5 cut(s) 109, 130, 209, 709, 853
HspAI GCGC 2 cut(s) 23, 467
Kpn2I TCCGGA 2 cut(s) 193, 445
KspAI GTTAAC 1 cut(s) 657
KspI CCGCGG 1 cut(s) 476
Kzo9I GATC 4 cut(s) 7, 17, 211, 852
LmnI GCTCC 5 cut(s) 66, 83, 448, 492, 639
Lsp1109I GCAGC 5 cut(s) 123, 141, 487, 643, 721
LweI GCATC 2 cut(s) 591, 691
MaeI CTAG 1 cut(s) 102
MaeII ACGT 3 cut(s) 450, 507, 1047
MaeIII GTNAC 2 cut(s) 419, 986
MalI GATC 4 cut(s) 9, 19, 213, 854
MboI GATC 4 cut(s) 7, 17, 211, 852
MboII GAAGA 6 cut(s) 47, 499, 758, 943, 973, 1029
MfeI CAATTG 2 cut(s) 230, 455
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 63
MluCI AATT 7 cut(s) 230, 274, 397, 455, 583, 761, 832
MlyI GAGTC 5 cut(s) 23, 308, 377, 711, 942
MmeI TCCRAC 2 cut(s) 276, 501
MroI TCCGGA 2 cut(s) 193, 445
MseI TTAA 3 cut(s) 114, 546, 656
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 154, 475
MspI CCGG 6 cut(s) 26, 194, 241, 309, 446, 843
MspR9I CCNGG 5 cut(s) 164, 182, 202, 310, 699
MunI CAATTG 2 cut(s) 230, 455
Mva1269I GAATGC 1 cut(s) 139
MvaI CCWGG 4 cut(s) 164, 182, 202, 699
MvnI CGCG 2 cut(s) 75, 475
MwoI GCNNNNNNNGC 6 cut(s) 92, 115, 136, 414, 637, 715
NciI CCSGG 1 cut(s) 310
NdeI CATATG 1 cut(s) 729
NdeII GATC 4 cut(s) 7, 17, 211, 852
NlaIII CATG 5 cut(s) 109, 130, 209, 709, 853
NlaIV GGNNCC 3 cut(s) 79, 314, 444
NmeAIII GCCGAG 1 cut(s) 384
NmuCI GTSAC 2 cut(s) 419, 986
NspI RCATGY 2 cut(s) 109, 130
NspV TTCGAA 1 cut(s) 278
PaeI GCATGC 1 cut(s) 109
PaqCI CACCTGC 1 cut(s) 141
PctI GAATGC 1 cut(s) 139
PfeI GAWTC 3 cut(s) 190, 326, 577
PflFI GACNNNGTC 1 cut(s) 175
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 8 cut(s) 77, 138, 153, 156, 169, 502, 633, 711
PleI GAGTC 5 cut(s) 23, 307, 376, 710, 942
PpsI GAGTC 5 cut(s) 23, 307, 376, 710, 942
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 4 cut(s) 162, 180, 200, 697
PspGI CCWGG 4 cut(s) 162, 180, 200, 697
PspN4I GGNNCC 3 cut(s) 79, 314, 444
PspPI GGNCC 2 cut(s) 238, 253
PsuI RGATCY 1 cut(s) 7
PsyI GACNNNGTC 1 cut(s) 175
RsaI GTAC 2 cut(s) 14, 648
RsaNI GTAC 2 cut(s) 13, 647
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 63
SacII CCGCGG 1 cut(s) 476
SaqAI TTAA 3 cut(s) 114, 546, 656
SatI GCNGC 8 cut(s) 76, 137, 152, 155, 168, 501, 632, 710
Sau3AI GATC 4 cut(s) 7, 17, 211, 852
Sau96I GGNCC 2 cut(s) 238, 253
SchI GAGTC 5 cut(s) 23, 308, 377, 711, 942
ScrFI CCNGG 5 cut(s) 164, 182, 202, 310, 699
SduI GDGCHC 1 cut(s) 63
SfaNI GCATC 2 cut(s) 591, 691
SfcI CTRYAG 1 cut(s) 943
Sfr303I CCGCGG 1 cut(s) 476
SfuI TTCGAA 1 cut(s) 278
SgrBI CCGCGG 1 cut(s) 476
SinI GGWCC 2 cut(s) 238, 253
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 109
Sse9I AATT 7 cut(s) 230, 274, 397, 455, 583, 761, 832
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 5 cut(s) 162, 180, 200, 308, 697
TaaI ACNGT 3 cut(s) 71, 425, 992
TaiI ACGT 3 cut(s) 453, 510, 1050
TaqI TCGA 5 cut(s) 44, 278, 485, 599, 618
TasI AATT 7 cut(s) 230, 274, 397, 455, 583, 761, 832
TauI GCSGC 3 cut(s) 78, 154, 170
TfiI GAWTC 3 cut(s) 190, 326, 577
Tru1I TTAA 3 cut(s) 114, 546, 656
Tru9I TTAA 3 cut(s) 114, 546, 656
TscAI CASTG 5 cut(s) 153, 337, 430, 961, 991
TseFI GTSAC 2 cut(s) 419, 986
TseI GCWGC 5 cut(s) 136, 154, 500, 631, 709
Tsp45I GTSAC 2 cut(s) 419, 986
TspDTI ATGAA 4 cut(s) 471, 572, 624, 1029
TspGWI ACGGA 1 cut(s) 30
TspRI CASTG 5 cut(s) 153, 337, 430, 961, 991
Tth111I GACNNNGTC 1 cut(s) 175
VpaK11BI GGWCC 2 cut(s) 238, 253
XapI RAATTY 3 cut(s) 274, 583, 761
XceI RCATGY 2 cut(s) 109, 130
XspI CTAG 1 cut(s) 102
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.