Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004946

Physical Location & Seq

Genomic Coordinates Reverse (-)

8203193 .. 8205871

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGAGAAGCAAATTTCCTGAAATTTTTTTAGAGCCTCACTTTCTCCCCCTTATCCCATCGCTTTGTCTCTCACCCGCTGCGAGATTAGATTATATCTTCTCCTTCTGTCTTCGTGGGTCTCCGTACTCCTCCATTCCTTACAACTCTGCAACTCCAACCACACTCTCTCTCTCCGCTGCCTGCAAATTTCTGCAATCTCAAGCTAAAAGTGCAAAGATAAACATCCCTATGGGAGAATCAGGCAACAAAAATGAAGAAAAGACTGCCACTTTTGTAAATGGAAAGGTCCAAGAGTTACCCATCAAGGGAAATTACCCAGATGAAAAGGATCAATTGCATCTGATTTCAAGGTCTAATGGTTCATTGAGACAATCCCATTGTGCTATCTGCATTGCCAAAGAGAGTTGTCGAATCGTGCGTTCAAGAACTAGGCTAATGAACATTTTGATGGAAAGAGGGAAGCCTCAGGAGGCTCAGTCCCTTTTCAATGGTTTGATTGAAGGAGGACACAGGCCATCACTGATATCATACACTACACTGTTGGCTGCCTTGACTGCCCAGAAGCGTTTCGAGTCCATTCCTTTTGTTATTTCACAGGTAGAAGAGAATGGATTGAGTCCTGATTTGATATTCTTCAATGCTGTTATAAATGCATTTTCTGAATCTGGGAACGTAGAGGAAGCAATGAAAATGTTTAGGAAGATGAAGGAGAGTGGATTGAAACCCACTACCAGTACTTATAACACATTGATCAAAGGGTATGGGATTTCGGGTAAGCCTGAGGATTCTTTGAAAGTGCTAGAGATGATGTCCCGAGAGGAAAATGTGAAGCCAAATATCAGGACTTATAATGTACTAGTCAGAGCATGGTGTAAGAAGAAGAACATCACAGAGGCATGGAGCGTGGTGCATAAGATGGTTGCTTCTGGAATGCGGCCTGATGCTGTTACTTACAACACATTAGCAACAGCTTATGCACAAAATGGAGAGACAAGTCAGGCAGAAGGACTGATTTTAGAGATGCAGAACAACAAGTTGTATCCGAACGAGCGAACTTGTGGCATTGTCATAAGCGGGTATTGCAAGGAAGGTAAGTTGAAGGAGGCCTTAAGGTTTATGCGCAGAATAAAAGATCTTGGTCTGCGCCCGAACATCGTTGTCTTTAACTCGCTGGTTAAAGGTTTCGTAGACACCATGGATAGAGATGGGGTTGATCAGGTGCTGAAGTTGATGGAAGAATTTGGGGTCAAACCAGATGTGATAACATTCAGCACCATCATGAATGCATGGAGCACAGCAGGGTTTATGGAGAAGTGTAGGCAAATATTTGACGACATGGTGAAGGCCGGCATAAAACCTGATGCGCATGCATACAGCATTCTTGCCAAAGGTTACGTGCGTGCTCAAGAAGTCGAGAAAGCTGAAGAACTATTGGCAACCATGATCAAATCAGGAGTTCGTCCCAATGTTGTGATATTCACAACCATCATAAGTGGATGGTGCAGTTCTGGCAGAATGGAGAACGCGATTAAAGTTTTCGATAAGATGTATGAGTCCGGTATTTCTCCCAATTTGAAGACGTTTGAGACCCTAATATGGGGATTTGGAGAAGCAAAGCTGCCATGGAAAGCTGAAGAAATACTCCAGATTATGAAAGAGTTTGGTGTTCAGCCAGAGAAATCTACTGTCTCGCTTGTTGCAGACGCTTGGCGTTCAATTGGATTAACAAAAGAGGCAAACAGGATGCTGGGTTCTGCAAGAAGTATGGAAAAGACTCCTCAGGTTAAACAAGAAGAGGAGCCATTTGAGAGCTTGGAGAAAATATATCAAAAGAAGTCTGCAAGTGCATTTCATCCCAATGTTTTACAGATACCATCAGCTGTAGCAAGTGATCAAAAGGGGTCAGCTTCAACAACTAGAAAAGGAAGAATGGTTTTAAGAGATGGTGATTTCTCATTGGACGTATCATCGCTTGCTGCGAAGTCTATGAATCTGTCGCATAATTGTAAATTCGGGGAGCGATCACCAATTATATGCAGGAAGCAATCTCAGGGGCAGCTTGGTGTGTATGGTCAGTTTGCACAGCAATGTACAGTTGTGTTCTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

704

Amino Acids

78.36

Weight (kDa)

9.14

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	169 - 219	6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	203 - 236	5.5e-08	PPR repeat
PPR_2	PF13041	207 - 254	3.8e-15	PPR repeat family
PPR	PF01535	212 - 240	6.7e-08	PPR repeat
PPR_3	PF13812	216 - 255	1.9e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	230 - 332	1.1e-09	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	232 - 336	4e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	239 - 270	1.6e-06	PPR repeat
PPR_2	PF13041	242 - 292	1.3e-11	PPR repeat family
PPR	PF01535	245 - 273	6.5e-06	PPR repeat
PPR_3	PF13812	246 - 290	8.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	275 - 307	1e-06	PPR repeat
PPR_2	PF13041	278 - 326	3.9e-13	PPR repeat family
PPR_3	PF13812	301 - 352	2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	313 - 362	3.8e-11	PPR repeat family
PPR_3	PF13812	340 - 397	3.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	346 - 375	3.3e-06	PPR repeat
PPR_2	PF13041	352 - 396	5.1e-09	PPR repeat family
PPR_long	PF17177	367 - 463	2.7e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	373 - 430	1.3e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	383 - 429	3.1e-07	PPR repeat family
TPR_24	PF23276	406 - 515	4.4e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	418 - 466	5.6e-12	PPR repeat family
PPR_long	PF17177	437 - 522	2.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	442 - 498	5.9e-09	Pentatricopeptide repeat domain
PPR_long	PF17177	472 - 585	4.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	484 - 536	9.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	485 - 516	1.4e-11	PPR repeat
PPR_2	PF13041	488 - 535	3.4e-14	PPR repeat family
PPR	PF01535	491 - 521	2.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25630 AT5G25630 AT5G25630
fragaria_vesca	FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130 FvH4_2g36130
malus_domestica	MD02G1045100.v1.1 MD08G1118600.v1.1 MD15G1097800.v1.1 MD15G1097900.v1.1
prunus_persica	Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1 Prupe.1G452700_v2.0.a1
pyrus_communis	pycom08g09890
rosa_chinensis	RchiOBHm_Chr6g0305741 RchiOBHm_Chr6g0306351
rosa_laevigata	RLG00000010863 RLG00000021840
rosa_roxburghii	Rroxscaffold_7G00162390
rosa_rugosa	Rorug06G0343700 Rorug06G0343800
rosa_samantha	Rh6AG455200 Rh6BG446100 Rh6CG469100 Rh6DG455700
rosa_wichuraiana	Rw6G039710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	647, 741, 849
Acc16I	TGCGCA	2 cut(s)	1121, 1365
AccI	GTMKAC	1 cut(s)	1188
AccII	CGCG	1 cut(s)	1526
AciI	CCGC	4 cut(s)	75, 174, 934, 1074
AclWI	GGATC	1 cut(s)	336
AcsI	RAATTY	5 cut(s)	11, 21, 185, 1238, 2009
AcuI	CTGAAG	3 cut(s)	1244, 1443, 1653
AfaI	GTAC	4 cut(s)	125, 736, 855, 2092
AfiI	CCNNNNNNNGG	3 cut(s)	305, 1596, 1597
AflII	CTTAAG	1 cut(s)	1108
AhlI	ACTAGT	1 cut(s)	856
AloI	GAACNNNNNNTCC	2 cut(s)	1735, 1767
AluBI	AGCT	9 cut(s)	203, 971, 1421, 1618, 1631, 1812, 1880, 1907, 2059
AluI	AGCT	9 cut(s)	203, 971, 1421, 1618, 1631, 1812, 1880, 1907, 2059
Alw21I	GWGCWC	2 cut(s)	1295, 1405
Alw26I	GTCTC	6 cut(s)	71, 123, 361, 983, 1580, 1693
AlwI	GGATC	1 cut(s)	336
AlwNI	CAGNNNCTG	1 cut(s)	1222
Ama87I	CYCGRG	1 cut(s)	813
AoxI	GGCC	4 cut(s)	512, 935, 1104, 1344
ApeKI	GCWGC	6 cut(s)	77, 176, 545, 1618, 1976, 2056
ApoI	RAATTY	5 cut(s)	11, 21, 185, 1238, 2009
Asp700I	GAANNNNTTC	1 cut(s)	566
AspLEI	GCGC	3 cut(s)	1122, 1146, 1366
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	4 cut(s)	63, 1351, 1958, 2016
AvaI	CYCGRG	1 cut(s)	813
AvaII	GGWCC	1 cut(s)	286
AxyI	CCTNAGG	3 cut(s)	465, 780, 1779
BbsI	GAAGAC	2 cut(s)	101, 1583
Bbv12I	GWGCWC	2 cut(s)	1295, 1405
BbvI	GCAGC	6 cut(s)	64, 163, 532, 1605, 1963, 2068
BciVI	GTATCC	1 cut(s)	1050
BclI	TGATCA	4 cut(s)	750, 1213, 1443, 1891
BcoDI	GTCTC	6 cut(s)	71, 123, 361, 983, 1580, 1693
BcuI	ACTAGT	1 cut(s)	856
BfaI	CTAG	4 cut(s)	429, 800, 857, 1917
BfmI	CTRYAG	1 cut(s)	1881
BfrI	CTTAAG	1 cut(s)	1108
BfuI	GTATCC	1 cut(s)	1050
BglII	AGATCT	1 cut(s)	1132
BisI	GCNGC	7 cut(s)	78, 177, 546, 935, 1619, 1977, 2057
BlsI	GCNGC	7 cut(s)	79, 178, 547, 936, 1620, 1978, 2058
BmcAI	AGTACT	1 cut(s)	736
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	1800
BmsI	GCATC	5 cut(s)	346, 931, 1011, 1351, 1734
BpiI	GAAGAC	2 cut(s)	101, 1583
BpmI	CTGGAG	1 cut(s)	1628
BpuEI	CTTGAG	2 cut(s)	183, 1389
BsaAI	YACGTR	1 cut(s)	1396
BsaBI	GATNNNNATC	1 cut(s)	221
BsaI	GGTCTC	2 cut(s)	123, 1580
BsaJI	CCNNGG	2 cut(s)	1194, 1622
BsaWI	WCCGGW	1 cut(s)	1556
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 1596, 1597
Bse118I	RCCGGY	1 cut(s)	1346
Bse1I	ACTGG	1 cut(s)	732
Bse21I	CCTNAGG	3 cut(s)	465, 780, 1779
Bse3DI	GCAATG	3 cut(s)	390, 690, 2093
Bse8I	GATNNNNATC	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	1194, 1622
BseGI	GGATG	4 cut(s)	222, 1502, 1749, 1852
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	3 cut(s)	305, 1596, 1597
BseMI	GCAATG	3 cut(s)	390, 690, 2093
BseMII	CTCAG	5 cut(s)	479, 488, 771, 1793, 2063
BseNI	ACTGG	1 cut(s)	732
BseRI	GAGGAG	3 cut(s)	118, 1767, 1811
BseXI	GCAGC	6 cut(s)	64, 163, 532, 1605, 1963, 2068
BseYI	CCCAGC	1 cut(s)	1747
BsgI	GTGCAG	1 cut(s)	1522
Bsh1236I	CGCG	1 cut(s)	1526
BshFI	GGCC	4 cut(s)	514, 937, 1106, 1346
BsiHKAI	GWGCWC	2 cut(s)	1295, 1405
BsiHKCI	CYCGRG	1 cut(s)	813
BsiSI	CCGG	2 cut(s)	1347, 1557
BslFI	GGGAC	3 cut(s)	463, 796, 1446
BslI	CCNNNNNNNGG	3 cut(s)	305, 1596, 1597
BsmAI	GTCTC	6 cut(s)	71, 123, 361, 983, 1580, 1693
BsmFI	GGGAC	3 cut(s)	463, 796, 1446
BsmI	GAATGC	3 cut(s)	936, 1288, 1377
BsnI	GGCC	4 cut(s)	514, 937, 1106, 1346
Bso31I	GGTCTC	2 cut(s)	123, 1580
BsoBI	CYCGRG	1 cut(s)	813
Bsp1286I	GDGCHC	2 cut(s)	1295, 1405
Bsp1407I	TGTACA	1 cut(s)	2090
Bsp143I	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
Bsp19I	CCATGG	2 cut(s)	1194, 1622
BspACI	CCGC	4 cut(s)	75, 174, 934, 1074
BspANI	GGCC	4 cut(s)	514, 937, 1106, 1346
BspCNI	CTCAG	5 cut(s)	478, 487, 772, 1792, 2062
BspFNI	CGCG	1 cut(s)	1526
BspHI	TCATGA	1 cut(s)	1278
BspLI	GGNNCC	1 cut(s)	1800
BspPI	GGATC	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	1108
BspTNI	GGTCTC	2 cut(s)	123, 1580
BsrDI	GCAATG	3 cut(s)	390, 690, 2093
BsrFI	RCCGGY	1 cut(s)	1346
BsrGI	TGTACA	1 cut(s)	2090
BsrI	ACTGG	1 cut(s)	732
BssAI	RCCGGY	1 cut(s)	1346
BssECI	CCNNGG	2 cut(s)	1194, 1622
BssMI	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
BssT1I	CCWWGG	2 cut(s)	1194, 1622
Bst4CI	ACNGT	3 cut(s)	540, 1687, 2095
Bst6I	CTCTTC	2 cut(s)	597, 1788
BstAFI	CTTAAG	1 cut(s)	1108
BstAUI	TGTACA	1 cut(s)	2090
BstBAI	YACGTR	1 cut(s)	1396
BstC8I	GCNNGC	5 cut(s)	181, 1348, 1368, 1401, 1974
BstDEI	CTNAG	5 cut(s)	465, 474, 780, 1779, 2049
BstDSI	CCRYGG	2 cut(s)	1194, 1622
BstF5I	GGATG	4 cut(s)	222, 1502, 1749, 1852
BstFNI	CGCG	1 cut(s)	1526
BstHHI	GCGC	3 cut(s)	1122, 1146, 1366
BstKTI	GATC	7 cut(s)	331, 753, 1135, 1216, 1446, 1894, 2024
BstMAI	GTCTC	6 cut(s)	71, 123, 361, 983, 1580, 1693
BstMBI	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 554, 1080, 1509
BstNSI	RCATGY	1 cut(s)	1370
BstSFI	CTRYAG	1 cut(s)	1881
BstUI	CGCG	1 cut(s)	1526
BstV1I	GCAGC	6 cut(s)	64, 163, 532, 1605, 1963, 2068
BstV2I	GAAGAC	2 cut(s)	101, 1583
BstX2I	RGATCY	1 cut(s)	1132
BstYI	RGATCY	1 cut(s)	1132
Bsu36I	CCTNAGG	3 cut(s)	465, 780, 1779
BsuI	GTATCC	1 cut(s)	1050
BsuRI	GGCC	4 cut(s)	514, 937, 1106, 1346
BtgI	CCRYGG	2 cut(s)	1194, 1622
BtgZI	GCGATG	2 cut(s)	42, 1953
BtsCI	GGATG	4 cut(s)	222, 1502, 1749, 1852
BtsIMutI	CAGTG	2 cut(s)	518, 536
Cac8I	GCNNGC	5 cut(s)	181, 1348, 1368, 1401, 1974
CaiI	CAGNNNCTG	1 cut(s)	1222
CciI	TCATGA	1 cut(s)	1278
CfoI	GCGC	3 cut(s)	1122, 1146, 1366
Cfr10I	RCCGGY	1 cut(s)	1346
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	1712
Csp6I	GTAC	4 cut(s)	124, 735, 854, 2091
CviAII	CATG	9 cut(s)	867, 897, 1195, 1279, 1287, 1336, 1367, 1441, 1623
CviQI	GTAC	4 cut(s)	124, 735, 854, 2091
DdeI	CTNAG	5 cut(s)	465, 474, 780, 1779, 2049
DpnI	GATC	7 cut(s)	330, 752, 1134, 1215, 1445, 1893, 2023
DpnII	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
Eam1104I	CTCTTC	2 cut(s)	597, 1788
EarI	CTCTTC	2 cut(s)	597, 1788
Eco130I	CCWWGG	2 cut(s)	1194, 1622
Eco147I	AGGCCT	1 cut(s)	1106
Eco31I	GGTCTC	2 cut(s)	123, 1580
Eco32I	GATATC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	286
Eco57I	CTGAAG	3 cut(s)	1244, 1443, 1653
Eco81I	CCTNAGG	3 cut(s)	465, 780, 1779
Eco88I	CYCGRG	1 cut(s)	813
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	2 cut(s)	1194, 1622
EcoT22I	ATGCAT	3 cut(s)	655, 1288, 1372
ErhI	CCWWGG	2 cut(s)	1194, 1622
FaeI	CATG	9 cut(s)	870, 900, 1198, 1282, 1290, 1339, 1370, 1444, 1626
FalI	AAGNNNNNCTT	2 cut(s)	1091, 1123
FaqI	GGGAC	3 cut(s)	463, 796, 1446
FatI	CATG	9 cut(s)	866, 896, 1194, 1278, 1286, 1335, 1366, 1440, 1622
FauI	CCCGC	2 cut(s)	82, 1067
FbaI	TGATCA	4 cut(s)	750, 1213, 1443, 1891
FblI	GTMKAC	1 cut(s)	1188
Fnu4HI	GCNGC	7 cut(s)	78, 177, 546, 935, 1619, 1977, 2057
FokI	GGATG	4 cut(s)	209, 1509, 1756, 1839
Fsp4HI	GCNGC	7 cut(s)	78, 177, 546, 935, 1619, 1977, 2057
FspAI	RTGCGCAY	1 cut(s)	1365
FspBI	CTAG	4 cut(s)	429, 800, 857, 1917
FspI	TGCGCA	2 cut(s)	1121, 1365
GlaI	GCGC	3 cut(s)	1121, 1145, 1365
GluI	GCNGC	7 cut(s)	78, 177, 546, 935, 1619, 1977, 2057
GsaI	CCCAGC	1 cut(s)	1751
GsuI	CTGGAG	1 cut(s)	1628
HaeIII	GGCC	4 cut(s)	514, 937, 1106, 1346
HapII	CCGG	2 cut(s)	1347, 1557
HgaI	GACGC	1 cut(s)	1712
HhaI	GCGC	3 cut(s)	1122, 1146, 1366
Hin1II	CATG	9 cut(s)	870, 900, 1198, 1282, 1290, 1339, 1370, 1444, 1626
Hin6I	GCGC	3 cut(s)	1120, 1144, 1364
HinP1I	GCGC	3 cut(s)	1120, 1144, 1364
HinfI	GANTC	9 cut(s)	236, 411, 572, 616, 662, 785, 1553, 1774, 1990
HpaII	CCGG	2 cut(s)	1347, 1557
HphI	GGTGA	4 cut(s)	63, 1351, 1958, 2016
Hpy166II	GTNNAC	1 cut(s)	1189
Hpy188I	TCNGA	4 cut(s)	342, 661, 863, 1044
Hpy8I	GTNNAC	1 cut(s)	1189
HpyAV	CCTTC	7 cut(s)	112, 494, 700, 998, 1082, 1093, 1336
HpyCH4III	ACNGT	3 cut(s)	540, 1687, 2095
HpyCH4IV	ACGT	4 cut(s)	672, 1395, 1580, 1962
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 554, 1080, 1509
HpyF3I	CTNAG	5 cut(s)	465, 474, 780, 1779, 2049
HpySE526I	ACGT	4 cut(s)	672, 1395, 1580, 1962
Hsp92II	CATG	9 cut(s)	870, 900, 1198, 1282, 1290, 1339, 1370, 1444, 1626
HspAI	GCGC	3 cut(s)	1120, 1144, 1364
KroI	GCCGGC	1 cut(s)	1346
KroNI	GCCGGC	1 cut(s)	1348
Ksp22I	TGATCA	4 cut(s)	750, 1213, 1443, 1891
Kzo9I	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
LmnI	GCTCC	4 cut(s)	900, 1290, 1798, 2017
Lsp1109I	GCAGC	6 cut(s)	64, 163, 532, 1605, 1963, 2068
LweI	GCATC	5 cut(s)	346, 931, 1011, 1351, 1734
MaeI	CTAG	4 cut(s)	429, 800, 857, 1917
MaeII	ACGT	4 cut(s)	672, 1395, 1580, 1962
MaeIII	GTNAC	3 cut(s)	294, 946, 1391
MalI	GATC	7 cut(s)	330, 752, 1134, 1215, 1445, 1893, 2023
MboI	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
MfeI	CAATTG	2 cut(s)	332, 1716
MflI	RGATCY	1 cut(s)	1132
MhlI	GDGCHC	2 cut(s)	1295, 1405
MlyI	GAGTC	4 cut(s)	581, 625, 1562, 1768
MmeI	TCCRAC	1 cut(s)	179
Mph1103I	ATGCAT	3 cut(s)	655, 1288, 1372
MroNI	GCCGGC	1 cut(s)	1346
MroXI	GAANNNNTTC	1 cut(s)	566
MseI	TTAA	7 cut(s)	1109, 1164, 1176, 1530, 1724, 1785, 1937
MslI	CAYNNNNRTG	5 cut(s)	227, 446, 1277, 1857, 2086
MspA1I	CMGCKG	3 cut(s)	77, 176, 1880
MspCI	CTTAAG	1 cut(s)	1108
MspI	CCGG	2 cut(s)	1347, 1557
MunI	CAATTG	2 cut(s)	332, 1716
Mva1269I	GAATGC	3 cut(s)	936, 1288, 1377
MvnI	CGCG	1 cut(s)	1526
MwoI	GCNNNNNNNGC	4 cut(s)	209, 554, 1080, 1509
NaeI	GCCGGC	1 cut(s)	1348
NcoI	CCATGG	2 cut(s)	1194, 1622
NdeII	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
NgoMIV	GCCGGC	1 cut(s)	1346
NlaIII	CATG	9 cut(s)	870, 900, 1198, 1282, 1290, 1339, 1370, 1444, 1626
NlaIV	GGNNCC	1 cut(s)	1800
NsbI	TGCGCA	2 cut(s)	1121, 1365
NsiI	ATGCAT	3 cut(s)	655, 1288, 1372
NspI	RCATGY	1 cut(s)	1370
PaeI	GCATGC	1 cut(s)	1370
PagI	TCATGA	1 cut(s)	1278
PceI	AGGCCT	1 cut(s)	1106
PcsI	WCGNNNNNNNCGW	2 cut(s)	415, 1976
PctI	GAATGC	3 cut(s)	936, 1288, 1377
PdiI	GCCGGC	1 cut(s)	1348
PdmI	GAANNNNTTC	1 cut(s)	566
PfeI	GAWTC	5 cut(s)	236, 411, 662, 785, 1990
PkrI	GCNGC	7 cut(s)	79, 178, 547, 936, 1620, 1978, 2058
PleI	GAGTC	4 cut(s)	580, 624, 1561, 1768
PpsI	GAGTC	4 cut(s)	580, 624, 1561, 1768
Ppu21I	YACGTR	1 cut(s)	1396
PsiI	TTATAA	3 cut(s)	647, 741, 849
PspFI	CCCAGC	1 cut(s)	1747
PspN4I	GGNNCC	1 cut(s)	1800
PspPI	GGNCC	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	1222
PsuI	RGATCY	1 cut(s)	1132
PvuII	CAGCTG	1 cut(s)	1880
RsaI	GTAC	4 cut(s)	125, 736, 855, 2092
RsaNI	GTAC	4 cut(s)	124, 735, 854, 2091
RseI	CAYNNNNRTG	5 cut(s)	227, 446, 1277, 1857, 2086
SaqAI	TTAA	7 cut(s)	1109, 1164, 1176, 1530, 1724, 1785, 1937
SatI	GCNGC	7 cut(s)	78, 177, 546, 935, 1619, 1977, 2057
Sau3AI	GATC	7 cut(s)	328, 750, 1132, 1213, 1443, 1891, 2021
Sau96I	GGNCC	1 cut(s)	286
ScaI	AGTACT	1 cut(s)	736
SchI	GAGTC	4 cut(s)	581, 625, 1562, 1768
SduI	GDGCHC	2 cut(s)	1295, 1405
SfaNI	GCATC	5 cut(s)	346, 931, 1011, 1351, 1734
SfcI	CTRYAG	1 cut(s)	1881
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	5 cut(s)	227, 446, 1277, 1857, 2086
SmlI	CTYRAG	3 cut(s)	198, 1108, 1404
SmoI	CTYRAG	3 cut(s)	198, 1108, 1404
SpeI	ACTAGT	1 cut(s)	856
SphI	GCATGC	1 cut(s)	1370
SseBI	AGGCCT	1 cut(s)	1106
SsiI	CCGC	4 cut(s)	75, 174, 934, 1074
SspI	AATATT	1 cut(s)	1326
SspMI	CTAG	4 cut(s)	429, 800, 857, 1917
StuI	AGGCCT	1 cut(s)	1106
StyI	CCWWGG	2 cut(s)	1194, 1622
TaaI	ACNGT	3 cut(s)	540, 1687, 2095
TaiI	ACGT	4 cut(s)	675, 1398, 1583, 1965
TaqI	TCGA	4 cut(s)	409, 570, 1413, 1539
TatI	WGTACW	3 cut(s)	734, 853, 2090
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	5 cut(s)	236, 411, 662, 785, 1990
Tru1I	TTAA	7 cut(s)	1109, 1164, 1176, 1530, 1724, 1785, 1937
Tru9I	TTAA	7 cut(s)	1109, 1164, 1176, 1530, 1724, 1785, 1937
TscAI	CASTG	2 cut(s)	525, 543
TseI	GCWGC	6 cut(s)	77, 176, 545, 1618, 1976, 2056
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	2 cut(s)	525, 543
Vha464I	CTTAAG	1 cut(s)	1108
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	5 cut(s)	11, 21, 185, 1238, 2009
XceI	RCATGY	1 cut(s)	1370
XmiI	GTMKAC	1 cut(s)	1188
XmnI	GAANNNNTTC	1 cut(s)	566
XspI	CTAG	4 cut(s)	429, 800, 857, 1917
ZrmI	AGTACT	1 cut(s)	736
Zsp2I	ATGCAT	3 cut(s)	655, 1288, 1372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.