pycom08g11670

Coiled-coil domain-containing protein 93

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0008812
Physical Location & Seq
Reverse (-)
9911647 .. 9914676
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
ATGTCAGAAGACAATCTCAACGAATTGATTCAGAAGAAGGTAAATTTCACGAGCGAATTGCAAAGTTTGAGAGAAAAAATCGAAAAGGGAGGCGCTGAAACTGCGGTTGAAAAATTGGTATCGCTCAAGCAGTCACTGAAGGAGTTGGAAAGGCAAACGCTTGAAGTCCAGTCTCTTAGCAATTCCGTATTGGAGGCTGAAGTTCGTAGATTGGAGGACCAAATAGAAAATGGGGTTGATAGTGAGGATGTTCCTGATGAACTGGATCGTTTGTTGAGTGAATCGGAGGCGAAAATCGGTTCGGCGAAAAGGGAACTTGCAGCTAAACTAAGGGCAGTGTTGGCAGTACAGCGCCAGATTGATGATGTTCCTTCGCAATCTGAGCTCGTCCAGTATGAACGCCGGTTGTCAGAATTGAATGCTCAAATTCAGGGAAAACTTCAACAAACTCGGAAATACTATGCCACTTACAATGCACTTTTGGAGATCAAGGAATATATGCTGAAGGAAATGTCATTGTTGAATTCAATAAGTTCACAGTTTCAAGAAGCAATCAATACCACTGACGGTCGCATGAAACTTATCGACTCCATGGAGGGAATCATAAGGGGCAGTCAACAGAAACTTCGAAAGGTACAACATGGGCTTCAAGAAGAGCAAAAAGTTTGTGATGCTCTCAAGGAAAAGTATTTTGCAGCAAGTGCAGAGCAAAGGCACTGTTATTCACTCTTAAAAGCTTTTCAGGAGGAATGTACAAAGAATGAGGTACTCCGAAGAAGTTCTGCTTCAAACATCTCCAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KOG2701

Protein Analysis

269

Amino Acids

30.62

Weight (kDa)

5.36

Isoelectric Point (pI)

64.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCDC93_CC PF09762 6 - 258 2.2e-49 CCDC93 coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 3 cut(s) 43, 426, 523
AcuI CTGAAG 3 cut(s) 158, 219, 524
AfaI GTAC 4 cut(s) 348, 636, 754, 768
AgsI TTSAA 9 cut(s) 110, 164, 418, 443, 523, 528, 545, 650, 789
AluBI AGCT 3 cut(s) 323, 385, 737
AluI AGCT 3 cut(s) 323, 385, 737
Alw21I GWGCWC 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 273
AlwNI CAGNNNCTG 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 320, 695
ApoI RAATTY 3 cut(s) 43, 426, 523
Asp700I GAANNNNTTC 2 cut(s) 27, 778
AspLEI GCGC 2 cut(s) 95, 354
AspS9I GGNCC 1 cut(s) 217
AsuII TTCGAA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 217
BanII GRGCYC 1 cut(s) 387
BauI CACGAG 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 387
BbvI GCAGC 2 cut(s) 332, 707
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BcoDI GTCTC 1 cut(s) 177
BfoI RGCGCY 2 cut(s) 96, 355
BisI GCNGC 2 cut(s) 321, 696
BlsI GCNGC 2 cut(s) 322, 697
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmsI GCATC 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 781
Bpu14I TTCGAA 1 cut(s) 628
BpuEI CTTGAG 2 cut(s) 110, 662
BsaJI CCNNGG 1 cut(s) 591
Bse118I RCCGGY 1 cut(s) 402
Bse1I ACTGG 3 cut(s) 169, 267, 391
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 1 cut(s) 253
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 3 cut(s) 169, 267, 391
BseXI GCAGC 2 cut(s) 332, 707
BsgI GTGCAG 1 cut(s) 723
Bsh1285I CGRYCG 1 cut(s) 571
BsiEI CGRYCG 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 403
BsmAI GTCTC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 424
Bsp119I TTCGAA 1 cut(s) 628
Bsp1286I GDGCHC 1 cut(s) 387
Bsp1407I TGTACA 1 cut(s) 752
Bsp143I GATC 2 cut(s) 265, 486
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 648
BspT104I TTCGAA 1 cut(s) 628
BsrFI RCCGGY 1 cut(s) 402
BsrGI TGTACA 1 cut(s) 752
BsrI ACTGG 3 cut(s) 169, 267, 391
BssAI RCCGGY 1 cut(s) 402
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 2 cut(s) 265, 486
BssSI CACGAG 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 591
Bst2BI CACGAG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 540, 569, 719
Bst6I CTCTTC 1 cut(s) 648
BstAPI GCANNNNNTGC 1 cut(s) 701
BstAUI TGTACA 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 628
BstDEI CTNAG 3 cut(s) 176, 329, 381
BstDSI CCRYGG 1 cut(s) 591
BstF5I GGATG 1 cut(s) 253
BstH2I RGCGCY 2 cut(s) 96, 355
BstHHI GCGC 2 cut(s) 95, 354
BstKTI GATC 2 cut(s) 268, 489
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 2 cut(s) 265, 486
BstMCI CGRYCG 1 cut(s) 571
BstMWI GCNNNNNNNGC 4 cut(s) 101, 341, 382, 701
BstV1I GCAGC 2 cut(s) 332, 707
BstV2I GAAGAC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 342
BtsIMutI CAGTG 4 cut(s) 134, 342, 561, 715
CaiI CAGNNNCTG 1 cut(s) 136
CfoI GCGC 2 cut(s) 95, 354
Cfr10I RCCGGY 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 4 cut(s) 347, 635, 753, 767
CviAII CATG 3 cut(s) 574, 592, 641
CviJI RGCY 5 cut(s) 197, 323, 385, 646, 737
CviKI_1 RGCY 5 cut(s) 197, 323, 385, 646, 737
CviQI GTAC 4 cut(s) 347, 635, 753, 767
DdeI CTNAG 3 cut(s) 176, 329, 381
DpnI GATC 2 cut(s) 267, 488
DpnII GATC 2 cut(s) 265, 486
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Ecl136II GAGCTC 1 cut(s) 385
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 387
Eco47I GGWCC 1 cut(s) 217
Eco53kI GAGCTC 1 cut(s) 385
Eco57I CTGAAG 3 cut(s) 158, 219, 524
EcoICRI GAGCTC 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 387
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 3 cut(s) 577, 595, 644
FaiI YATR 8 cut(s) 396, 462, 498, 500, 575, 593, 605, 642
FalI AAGNNNNNCTT 2 cut(s) 769, 801
FatI CATG 3 cut(s) 573, 591, 640
Fnu4HI GCNGC 2 cut(s) 321, 696
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 2 cut(s) 321, 696
GlaI GCGC 2 cut(s) 94, 353
GluI GCNGC 2 cut(s) 321, 696
GsuI CTGGAG 1 cut(s) 781
HaeII RGCGCY 2 cut(s) 96, 355
HapII CCGG 1 cut(s) 403
HhaI GCGC 2 cut(s) 95, 354
Hin1II CATG 3 cut(s) 577, 595, 644
Hin6I GCGC 2 cut(s) 93, 352
HinP1I GCGC 2 cut(s) 93, 352
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HindIII AAGCTT 1 cut(s) 735
HinfI GANTC 4 cut(s) 28, 281, 587, 600
HpaII CCGG 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 536, 617
Hpy188I TCNGA 7 cut(s) 7, 33, 286, 382, 412, 453, 773
Hpy188III TCNNGA 6 cut(s) 49, 254, 545, 650, 743, 798
Hpy8I GTNNAC 2 cut(s) 536, 617
HpyAV CCTTC 4 cut(s) 31, 133, 381, 499
HpyCH4III ACNGT 3 cut(s) 540, 569, 719
HpyCH4V TGCA 5 cut(s) 61, 320, 476, 695, 704
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 341, 382, 701
HpyF3I CTNAG 3 cut(s) 176, 329, 381
Hsp92II CATG 3 cut(s) 577, 595, 644
HspAI GCGC 2 cut(s) 93, 352
Kzo9I GATC 2 cut(s) 265, 486
LguI GCTCTTC 1 cut(s) 648
LpnPI CCDG 8 cut(s) 182, 248, 267, 368, 404, 416, 416, 728
Lsp1109I GCAGC 2 cut(s) 332, 707
LweI GCATC 1 cut(s) 661
MaeIII GTNAC 1 cut(s) 132
MalI GATC 2 cut(s) 267, 488
MboI GATC 2 cut(s) 265, 486
MboII GAAGA 4 cut(s) 20, 46, 665, 786
MhlI GDGCHC 1 cut(s) 387
MluCI AATT 8 cut(s) 23, 43, 56, 113, 181, 413, 426, 523
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 8 cut(s) 83, 187, 208, 238, 280, 589, 739, 757
MroXI GAANNNNTTC 2 cut(s) 27, 778
MseI TTAA 1 cut(s) 731
MspI CCGG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 424
MwoI GCNNNNNNNGC 4 cut(s) 101, 341, 382, 701
NcoI CCATGG 1 cut(s) 591
NdeII GATC 2 cut(s) 265, 486
NlaIII CATG 3 cut(s) 577, 595, 644
NmuCI GTSAC 1 cut(s) 132
NspV TTCGAA 1 cut(s) 628
PciSI GCTCTTC 1 cut(s) 648
PctI GAATGC 1 cut(s) 424
PdmI GAANNNNTTC 2 cut(s) 27, 778
PfeI GAWTC 3 cut(s) 28, 281, 600
PkrI GCNGC 2 cut(s) 322, 697
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 136
RsaI GTAC 4 cut(s) 348, 636, 754, 768
RsaNI GTAC 4 cut(s) 347, 635, 753, 767
SacI GAGCTC 1 cut(s) 387
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 1 cut(s) 731
SatI GCNGC 2 cut(s) 321, 696
Sau3AI GATC 2 cut(s) 265, 486
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 581
SduI GDGCHC 1 cut(s) 387
SetI ASST 6 cut(s) 42, 325, 387, 636, 739, 768
SfaNI GCATC 1 cut(s) 661
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 1 cut(s) 217
SmlI CTYRAG 2 cut(s) 125, 677
SmoI CTYRAG 2 cut(s) 125, 677
Sse9I AATT 8 cut(s) 23, 43, 56, 113, 181, 413, 426, 523
SsiI CCGC 1 cut(s) 104
SstI GAGCTC 1 cut(s) 387
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 3 cut(s) 540, 569, 719
TaqI TCGA 3 cut(s) 81, 585, 628
TasI AATT 8 cut(s) 23, 43, 56, 113, 181, 413, 426, 523
TatI WGTACW 2 cut(s) 346, 752
TfiI GAWTC 3 cut(s) 28, 281, 600
Tru1I TTAA 1 cut(s) 731
Tru9I TTAA 1 cut(s) 731
TscAI CASTG 4 cut(s) 141, 342, 568, 722
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 2 cut(s) 320, 695
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 273, 411, 590
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 4 cut(s) 141, 342, 568, 722
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 3 cut(s) 43, 426, 523
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
XmnI GAANNNNTTC 2 cut(s) 27, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.