Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007005

Physical Location & Seq

Genomic Coordinates Forward (+)

15987273 .. 15988696

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g16100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCGGCAACCACCCCCTCCCCCCGCGAAGAGAACGTCTACATGGCTAAGCTTGCCGAGCAAGCCGAGCGCTACGAGGAGATGGTCGAGTTCGTCGAGAAGGTCTCCGCCTCCGCCGATAAAGAGGAGCTCACCGTCGAGGAGCGCAACCTCCTCTCCGTCGCCTACAAGAACGTCATCGGCGCCCGCCGTGCCTCCTGGCGCATCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGCAACGACGACCACGTCGCCACGATCCGTGACTACCGATCCAAGATCGAGACCGAGCTCTCCAACATCTGCGACGGCATTCTCAAGCTCCTCGACTCCAGGCTCATCCCCTCCGCCATCGCCGGCGATTCCAAGGTCTTTTATCTCAAGATGAAGGGCGATTACCACCGTTATCTTGCCGAGTTCAAGACCGGCGCCGAGCGCAAGGAGGCCGCCGAGAGCACCCTCTCCGCCTACAAGGCCGCTCAGGACATTGCCAATGCCGAACTGGCACCAACACATCCAATCCGCCTGGGGTTGGCTCTCAACTTCTCTGTGTTTTACTATGAGATTCTGAACTCTCCTGACCGCGCCTGCAATCTCGCCAAACAGGCTTTTGATGAAGCGATTGCAGAGTTGGACACTCTCGGAGAGGAGTCATACAAGGACAGCACTTTGATAATGCAGCTTCTCCGTGATAATCTCACCCTGTGGACCTCTGACATGCAGGATGATGCGTCTGACGAGGTTAAAGAAGCAGCAGCGCCCAAGCCCACCGAAGAACCAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0019222 GO:0023052 GO:0031090 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

265

Amino Acids

29.67

Weight (kDa)

4.76

Isoelectric Point (pI)

49.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35160 AT1G35160 AT1G78300 AT4G09000 AT4G09000
fragaria_vesca	FvH4_5g36710
malus_domestica	MD00G1018600.v1.1 MD08G1187400.v1.1 MD10G1084500.v1.1 MD15G1373400.v1.1
prunus_persica	Prupe.1G521900_v2.0.a1 Prupe.8G064700_v2.0.a1
pyrus_communis	pycom05g06310 pycom08g16100 pycom15g33450
rosa_chinensis	RchiOBHm_Chr7g0242691
rosa_laevigata	RLG00000000887
rosa_multiflora	Rmu_sc0017298.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222580
rosa_rugosa	Rorug07G0316300
rosa_samantha	Rh7AG471300 Rh7BG441600 Rh7CG488300 Rh7DG456900
rosa_wichuraiana	Rw7G039230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	254
AccB1I	GGYRCC	3 cut(s)	182, 434, 511
AccBSI	CCGCTC	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	3 cut(s)	27, 240, 591
AclWI	GGATC	2 cut(s)	259, 273
AcyI	GRCGYC	2 cut(s)	183, 435
AdeI	CACNNNGTG	1 cut(s)	711
AfeI	AGCGCT	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	427
AjiI	CACGTC	1 cut(s)	256
AjnI	CCWGG	3 cut(s)	197, 338, 531
AluBI	AGCT	5 cut(s)	52, 130, 298, 328, 688
AluI	AGCT	5 cut(s)	52, 130, 298, 328, 688
Alw21I	GWGCWC	3 cut(s)	132, 300, 464
Alw26I	GTCTC	2 cut(s)	109, 284
AlwI	GGATC	2 cut(s)	259, 273
Aor51HI	AGCGCT	1 cut(s)	71
AoxI	GGCC	2 cut(s)	450, 480
ApeKI	GCWGC	3 cut(s)	685, 758, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	21, 53
AspLEI	GCGC	8 cut(s)	72, 147, 185, 204, 437, 444, 593, 766
AspS9I	GGNCC	1 cut(s)	714
AsuHPI	GGTGA	2 cut(s)	124, 697
AvaII	GGWCC	1 cut(s)	714
BanI	GGYRCC	3 cut(s)	182, 434, 511
BanII	GRGCYC	2 cut(s)	132, 300
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
Bbv12I	GWGCWC	3 cut(s)	132, 300, 464
BbvI	GCAGC	3 cut(s)	697, 770, 773
BccI	CCATC	3 cut(s)	76, 224, 365
BceAI	ACGGC	2 cut(s)	174, 331
BciT130I	CCWGG	3 cut(s)	199, 340, 533
BcoDI	GTCTC	2 cut(s)	109, 284
BfoI	RGCGCY	4 cut(s)	73, 186, 438, 767
BglI	GCCNNNNNGGC	3 cut(s)	479, 509, 611
BisI	GCNGC	8 cut(s)	6, 238, 241, 453, 483, 686, 759, 762
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	8 cut(s)	7, 239, 242, 454, 484, 687, 760, 763
Bme1390I	CCNGG	3 cut(s)	199, 340, 533
Bme18I	GGWCC	1 cut(s)	714
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	714
BmiI	GGNNCC	3 cut(s)	184, 436, 513
BmrFI	CCNGG	3 cut(s)	199, 340, 533
BmsI	GCATC	2 cut(s)	213, 724
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
BpmI	CTGGAG	1 cut(s)	322
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	308, 371
BsaHI	GRCGYC	2 cut(s)	183, 435
BsaI	GGTCTC	2 cut(s)	109, 284
BsaJI	CCNNGG	3 cut(s)	238, 372, 532
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	538
Bse118I	RCCGGY	2 cut(s)	362, 431
Bse1I	ACTGG	1 cut(s)	513
Bse3DI	GCAATG	1 cut(s)	492
BseBI	CCWGG	3 cut(s)	199, 340, 533
BseDI	CCNNGG	3 cut(s)	238, 372, 532
BseGI	GGATG	3 cut(s)	345, 520, 736
BseLI	CCNNNNNNNGG	1 cut(s)	538
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	513
BseRI	GAGGAG	8 cut(s)	92, 140, 143, 155, 202, 245, 320, 668
BseXI	GCAGC	3 cut(s)	697, 770, 773
Bsh1236I	CGCG	3 cut(s)	27, 240, 591
BshFI	GGCC	2 cut(s)	452, 482
BshNI	GGYRCC	3 cut(s)	182, 434, 511
BsiHKAI	GWGCWC	3 cut(s)	132, 300, 464
BsiSI	CCGG	2 cut(s)	363, 432
BslI	CCNNNNNNNGG	1 cut(s)	538
BsmAI	GTCTC	2 cut(s)	109, 284
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	452, 482
Bso31I	GGTCTC	2 cut(s)	109, 284
Bsp1286I	GDGCHC	3 cut(s)	132, 300, 464
Bsp143I	GATC	3 cut(s)	264, 278, 285
Bsp1720I	GCTNAGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	452, 482
BspCNI	CTCAG	1 cut(s)	499
BspFNI	CGCG	3 cut(s)	27, 240, 591
BspLI	GGNNCC	3 cut(s)	184, 436, 513
BspPI	GGATC	2 cut(s)	259, 273
BspT107I	GGYRCC	3 cut(s)	182, 434, 511
BspTNI	GGTCTC	2 cut(s)	109, 284
BsrBI	CCGCTC	1 cut(s)	485
BsrDI	GCAATG	1 cut(s)	492
BsrFI	RCCGGY	2 cut(s)	362, 431
BsrI	ACTGG	1 cut(s)	513
BssAI	RCCGGY	2 cut(s)	362, 431
BssECI	CCNNGG	3 cut(s)	238, 372, 532
BssMI	GATC	3 cut(s)	264, 278, 285
BssNI	GRCGYC	2 cut(s)	183, 435
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	3 cut(s)	199, 340, 533
Bst4CI	ACNGT	2 cut(s)	136, 410
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	2 cut(s)	183, 435
BstC8I	GCNNGC	5 cut(s)	54, 63, 187, 364, 595
BstDEI	CTNAG	2 cut(s)	48, 486
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	345, 520, 736
BstFNI	CGCG	3 cut(s)	27, 240, 591
BstH2I	RGCGCY	4 cut(s)	73, 186, 438, 767
BstHHI	GCGC	8 cut(s)	72, 147, 185, 204, 437, 444, 593, 766
BstKTI	GATC	3 cut(s)	267, 281, 288
BstMAI	GTCTC	2 cut(s)	109, 284
BstMBI	GATC	3 cut(s)	264, 278, 285
BstMWI	GCNNNNNNNGC	9 cut(s)	53, 58, 62, 67, 191, 441, 479, 509, 611
BstNI	CCWGG	3 cut(s)	199, 340, 533
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	3 cut(s)	197, 338, 531
BstUI	CGCG	3 cut(s)	27, 240, 591
BstV1I	GCAGC	3 cut(s)	697, 770, 773
BsuRI	GGCC	2 cut(s)	452, 482
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	343
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	345, 520, 736
Cac8I	GCNNGC	5 cut(s)	54, 63, 187, 364, 595
CfoI	GCGC	8 cut(s)	72, 147, 185, 204, 437, 444, 593, 766
Cfr10I	RCCGGY	2 cut(s)	362, 431
Cfr13I	GGNCC	1 cut(s)	714
Cfr42I	CCGCGG	1 cut(s)	241
CseI	GACGC	1 cut(s)	726
CviAII	CATG	2 cut(s)	43, 724
DdeI	CTNAG	2 cut(s)	48, 486
DinI	GGCGCC	2 cut(s)	184, 436
DpnI	GATC	3 cut(s)	266, 280, 287
DpnII	GATC	3 cut(s)	264, 278, 285
DraIII	CACNNNGTG	1 cut(s)	711
DrdI	GACNNNNNNGTC	1 cut(s)	254
DseDI	GACNNNNNNGTC	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	5 cut(s)	97, 103, 343, 460, 518
Ecl136II	GAGCTC	2 cut(s)	130, 298
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	2 cut(s)	132, 300
Eco31I	GGTCTC	2 cut(s)	109, 284
Eco47I	GGWCC	1 cut(s)	714
Eco47III	AGCGCT	1 cut(s)	71
Eco53kI	GAGCTC	2 cut(s)	130, 298
EcoICRI	GAGCTC	2 cut(s)	130, 298
EcoRII	CCWGG	3 cut(s)	197, 338, 531
EcoT14I	CCWWGG	1 cut(s)	372
EcoT38I	GRGCYC	2 cut(s)	132, 300
EgeI	GGCGCC	2 cut(s)	184, 436
EheI	GGCGCC	2 cut(s)	184, 436
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	2 cut(s)	46, 727
FaiI	YATR	4 cut(s)	44, 567, 661, 725
FatI	CATG	2 cut(s)	42, 723
FauI	CCCGC	2 cut(s)	32, 194
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	8 cut(s)	6, 238, 241, 453, 483, 686, 759, 762
FokI	GGATG	3 cut(s)	332, 507, 743
FriOI	GRGCYC	2 cut(s)	132, 300
Fsp4HI	GCNGC	8 cut(s)	6, 238, 241, 453, 483, 686, 759, 762
GlaI	GCGC	8 cut(s)	71, 146, 184, 203, 436, 443, 592, 765
GluI	GCNGC	8 cut(s)	6, 238, 241, 453, 483, 686, 759, 762
GsuI	CTGGAG	1 cut(s)	322
HaeII	RGCGCY	4 cut(s)	73, 186, 438, 767
HaeIII	GGCC	2 cut(s)	452, 482
HapII	CCGG	2 cut(s)	363, 432
HgaI	GACGC	1 cut(s)	726
HhaI	GCGC	8 cut(s)	72, 147, 185, 204, 437, 444, 593, 766
Hin1I	GRCGYC	2 cut(s)	183, 435
Hin1II	CATG	2 cut(s)	46, 727
Hin6I	GCGC	8 cut(s)	70, 145, 183, 202, 435, 442, 591, 764
HinP1I	GCGC	8 cut(s)	70, 145, 183, 202, 435, 442, 591, 764
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	4 cut(s)	335, 368, 571, 656
HpaII	CCGG	2 cut(s)	363, 432
HphI	GGTGA	2 cut(s)	124, 697
Hpy166II	GTNNAC	2 cut(s)	40, 714
Hpy188I	TCNGA	4 cut(s)	576, 650, 721, 742
Hpy188III	TCNNGA	6 cut(s)	97, 289, 388, 427, 488, 584
Hpy8I	GTNNAC	2 cut(s)	40, 714
Hpy99I	CGWCG	6 cut(s)	98, 140, 164, 251, 260, 317
HpyAV	CCTTC	3 cut(s)	94, 220, 388
HpyCH4III	ACNGT	2 cut(s)	136, 410
HpyCH4IV	ACGT	3 cut(s)	36, 174, 255
HpyCH4V	TGCA	4 cut(s)	597, 632, 685, 727
HpyF10VI	GCNNNNNNNGC	9 cut(s)	53, 58, 62, 67, 191, 441, 479, 509, 611
HpyF3I	CTNAG	2 cut(s)	48, 486
HpySE526I	ACGT	3 cut(s)	36, 174, 255
Hsp92I	GRCGYC	2 cut(s)	183, 435
Hsp92II	CATG	2 cut(s)	46, 727
HspAI	GCGC	8 cut(s)	70, 145, 183, 202, 435, 442, 591, 764
KasI	GGCGCC	2 cut(s)	182, 434
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
KspI	CCGCGG	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	264, 278, 285
LmnI	GCTCC	3 cut(s)	127, 142, 333
Lsp1109I	GCAGC	3 cut(s)	697, 770, 773
LweI	GCATC	2 cut(s)	213, 724
MaeII	ACGT	3 cut(s)	36, 174, 255
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	266, 280, 287
MbiI	CCGCTC	1 cut(s)	485
MboI	GATC	3 cut(s)	264, 278, 285
MboII	GAAGA	2 cut(s)	41, 791
MhlI	GDGCHC	3 cut(s)	132, 300, 464
Mly113I	GGCGCC	2 cut(s)	183, 435
MlyI	GAGTC	2 cut(s)	329, 665
MmeI	TCCRAC	2 cut(s)	327, 618
MreI	CGCCGGCG	1 cut(s)	362
MroNI	GCCGGC	1 cut(s)	362
MseI	TTAA	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	2 cut(s)	363, 432
MspR9I	CCNGG	3 cut(s)	199, 340, 533
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	3 cut(s)	199, 340, 533
MvnI	CGCG	3 cut(s)	27, 240, 591
MwoI	GCNNNNNNNGC	9 cut(s)	53, 58, 62, 67, 191, 441, 479, 509, 611
NaeI	GCCGGC	1 cut(s)	364
NarI	GGCGCC	2 cut(s)	183, 435
NdeII	GATC	3 cut(s)	264, 278, 285
NgoMIV	GCCGGC	1 cut(s)	362
NlaIII	CATG	2 cut(s)	46, 727
NlaIV	GGNNCC	3 cut(s)	184, 436, 513
NmeAIII	GCCGAG	5 cut(s)	82, 91, 445, 463, 481
NmuCI	GTSAC	1 cut(s)	269
NspI	RCATGY	1 cut(s)	727
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 252
PctI	GAATGC	1 cut(s)	318
PdiI	GCCGGC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	368, 571
PflFI	GACNNNGTC	1 cut(s)	254
PkrI	GCNGC	8 cut(s)	7, 239, 242, 454, 484, 687, 760, 763
PleI	GAGTC	2 cut(s)	329, 664
PluTI	GGCGCC	2 cut(s)	186, 438
PpsI	GAGTC	2 cut(s)	329, 664
Psp124BI	GAGCTC	2 cut(s)	132, 300
Psp6I	CCWGG	3 cut(s)	197, 338, 531
PspGI	CCWGG	3 cut(s)	197, 338, 531
PspN4I	GGNNCC	3 cut(s)	184, 436, 513
PspPI	GGNCC	1 cut(s)	714
PsyI	GACNNNGTC	1 cut(s)	254
SacI	GAGCTC	2 cut(s)	132, 300
SacII	CCGCGG	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	8 cut(s)	6, 238, 241, 453, 483, 686, 759, 762
Sau3AI	GATC	3 cut(s)	264, 278, 285
Sau96I	GGNCC	1 cut(s)	714
SchI	GAGTC	2 cut(s)	329, 665
ScrFI	CCNGG	3 cut(s)	199, 340, 533
SduI	GDGCHC	3 cut(s)	132, 300, 464
SfaNI	GCATC	2 cut(s)	213, 724
SfoI	GGCGCC	2 cut(s)	184, 436
Sfr303I	CCGCGG	1 cut(s)	241
SgrAI	CRCCGGYG	1 cut(s)	362
SgrBI	CCGCGG	1 cut(s)	241
SinI	GGWCC	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	323, 386
SmoI	CTYRAG	2 cut(s)	323, 386
SspDI	GGCGCC	2 cut(s)	182, 434
SstI	GAGCTC	2 cut(s)	132, 300
StyD4I	CCNGG	3 cut(s)	197, 338, 531
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	136, 410
TaiI	ACGT	3 cut(s)	39, 177, 258
TaqI	TCGA	6 cut(s)	87, 96, 138, 219, 288, 333
TaqII	GACCGA	1 cut(s)	308
TauI	GCSGC	5 cut(s)	8, 240, 243, 455, 485
TfiI	GAWTC	2 cut(s)	368, 571
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	3 cut(s)	685, 758, 761
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	2 cut(s)	407, 636
TspGWI	ACGGA	3 cut(s)	148, 257, 683
Tth111I	GACNNNGTC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	714
XceI	RCATGY	1 cut(s)	727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.