Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007005

Physical Location & Seq

Genomic Coordinates Forward (+)

5608841 .. 5610439

Gene Structure 1599 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCGCCCCCACGCCGCGCGAGGAGAACGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCGTCGAGAAGGTCTCCGCCTCCGCCGACAAGGAGGAGCTCACCGTCGAGGAGCGTAATCTTCTCTCCGTTGCTTACAAGAACGTCATCGGAGCCCGCCGCGCCAGCTGGCGCATCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGCAACGACGACCACGTCAGCATGATCCGCGAGTACCGATCCAAGATCGAGACCGAGCTCTCCAAAATCTGCGACGGGATTCTCAAGCTGCTCGACTCGCGCCTCATTCCCTCGGCGTTTTCCGGCGACTCCAAGGTGTTTTATCTGAAAATGAAGGGGGATTACCACCGTTACCTGGCTGAGTTCAAGACCGGCGCCGAGCGCAAGGAGGCCGCTGAGAGCACCCTCACTGCCTACAAGGCTGCTCAGGATATTGCCAATGCTGAACTGGCACCAACACATCCCATCCGCCTTGGACTTGCCCTCAACTTCTCTGTGTTTTACTATGAGATTCTCAACTCTCCTGACCGTGCTTGCAATCTCGCCAAGCAGGCTTTTGATGAAGCAATTGCAGAGTTGGACACACTGGGCGAGGAGTCGTACAAGGACAGCACTTTGATCATGCAACTGCTCCGTGATAACCTCACTCTCTGGACCTCTGACATGCAGGATGATGGTGCTGATGAGATTAAAGAAGCACCCAAGCCCACTGAGGAAGCAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0019222 GO:0023052 GO:0031090 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

260

Amino Acids

29.44

Weight (kDa)

4.81

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	13 - 237	2.7e-105	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35160 AT1G35160 AT1G78300 AT4G09000 AT4G09000
fragaria_vesca	FvH4_5g36710
malus_domestica	MD00G1018600.v1.1 MD08G1187400.v1.1 MD10G1084500.v1.1 MD15G1373400.v1.1
prunus_persica	Prupe.1G521900_v2.0.a1 Prupe.8G064700_v2.0.a1
pyrus_communis	pycom05g06310 pycom08g16100 pycom15g33450
rosa_chinensis	RchiOBHm_Chr7g0242691
rosa_laevigata	RLG00000000887
rosa_multiflora	Rmu_sc0017298.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222580
rosa_rugosa	Rorug07G0316300
rosa_samantha	Rh7AG471300 Rh7BG441600 Rh7CG488300 Rh7DG456900
rosa_wichuraiana	Rw7G039230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB1I	GGYRCC	2 cut(s)	428, 505
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
AclWI	GGATC	2 cut(s)	253, 267
AcoI	YGGCCR	2 cut(s)	3, 39
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	2 cut(s)	269, 656
AfeI	AGCGCT	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	1 cut(s)	421
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	5 cut(s)	46, 124, 192, 292, 322
AluI	AGCT	5 cut(s)	46, 124, 192, 292, 322
Alw21I	GWGCWC	3 cut(s)	126, 294, 458
Alw26I	GTCTC	2 cut(s)	103, 278
AlwI	GGATC	2 cut(s)	253, 267
Aor51HI	AGCGCT	1 cut(s)	65
AoxI	GGCC	4 cut(s)	3, 39, 57, 444
ApeKI	GCWGC	2 cut(s)	322, 476
AspLEI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
AspS9I	GGNCC	1 cut(s)	708
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	708
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	2 cut(s)	428, 505
BanII	GRGCYC	3 cut(s)	126, 181, 294
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
Bbv12I	GWGCWC	3 cut(s)	126, 294, 458
BbvI	GCAGC	2 cut(s)	309, 463
BccI	CCATC	4 cut(s)	70, 218, 527, 722
BciT130I	CCWGG	1 cut(s)	410
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	2 cut(s)	103, 278
BfoI	RGCGCY	2 cut(s)	67, 432
BglI	GCCNNNNNGGC	3 cut(s)	56, 473, 605
BisI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
BlsI	GCNGC	8 cut(s)	7, 18, 185, 233, 236, 324, 448, 478
Bme1390I	CCNGG	1 cut(s)	410
Bme18I	GGWCC	1 cut(s)	708
BmgBI	CACGTC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	708
BmiI	GGNNCC	3 cut(s)	178, 430, 507
BmrFI	CCNGG	1 cut(s)	410
BmrI	ACTGGG	1 cut(s)	650
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	650
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	429
BsaI	GGTCTC	2 cut(s)	103, 278
BsaJI	CCNNGG	4 cut(s)	232, 345, 366, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	507, 645
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	4 cut(s)	232, 345, 366, 526
BseGI	GGATG	3 cut(s)	514, 519, 730
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	4 cut(s)	405, 441, 494, 756
BseNI	ACTGG	2 cut(s)	507, 645
BseRI	GAGGAG	7 cut(s)	38, 86, 134, 149, 196, 239, 662
BseXI	GCAGC	2 cut(s)	309, 463
Bsh1236I	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
BshFI	GGCC	4 cut(s)	5, 41, 59, 446
BshNI	GGYRCC	2 cut(s)	428, 505
BsiHKAI	GWGCWC	3 cut(s)	126, 294, 458
BsiSI	CCGG	2 cut(s)	357, 426
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	103, 278
BsnI	GGCC	4 cut(s)	5, 41, 59, 446
Bso31I	GGTCTC	2 cut(s)	103, 278
Bsp1286I	GDGCHC	4 cut(s)	126, 181, 294, 458
Bsp143I	GATC	4 cut(s)	258, 272, 279, 672
BspANI	GGCC	4 cut(s)	5, 41, 59, 446
BspCNI	CTCAG	4 cut(s)	406, 442, 493, 757
BspFNI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
BspLI	GGNNCC	3 cut(s)	178, 430, 507
BspPI	GGATC	2 cut(s)	253, 267
BspT107I	GGYRCC	2 cut(s)	428, 505
BspTNI	GGTCTC	2 cut(s)	103, 278
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	2 cut(s)	507, 645
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	232, 345, 366, 526
BssMI	GATC	4 cut(s)	258, 272, 279, 672
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	366, 526
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	130, 404, 584
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	7 cut(s)	48, 57, 181, 190, 194, 589, 606
BstDEI	CTNAG	4 cut(s)	414, 450, 480, 765
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	514, 519, 730
BstFNI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
BstH2I	RGCGCY	2 cut(s)	67, 432
BstHHI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
BstKTI	GATC	4 cut(s)	261, 275, 282, 675
BstMAI	GTCTC	2 cut(s)	103, 278
BstMBI	GATC	4 cut(s)	258, 272, 279, 672
BstNI	CCWGG	1 cut(s)	410
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	1 cut(s)	408
BstUI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
BstV1I	GCAGC	2 cut(s)	309, 463
BsuRI	GGCC	4 cut(s)	5, 41, 59, 446
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	514, 519, 730
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	3 cut(s)	462, 638, 762
Cac8I	GCNNGC	7 cut(s)	48, 57, 181, 190, 194, 589, 606
CfoI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	708
Cfr42I	CCGCGG	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	268, 655
CviAII	CATG	4 cut(s)	37, 256, 676, 718
CviQI	GTAC	2 cut(s)	268, 655
DdeI	CTNAG	4 cut(s)	414, 450, 480, 765
DinI	GGCGCC	1 cut(s)	430
DpnI	GATC	4 cut(s)	260, 274, 281, 674
DpnII	GATC	4 cut(s)	258, 272, 279, 672
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	3, 39
EciI	GGCGGA	3 cut(s)	91, 97, 512
Ecl136II	GAGCTC	2 cut(s)	124, 292
Eco130I	CCWWGG	2 cut(s)	366, 526
Eco24I	GRGCYC	3 cut(s)	126, 181, 294
Eco31I	GGTCTC	2 cut(s)	103, 278
Eco47I	GGWCC	1 cut(s)	708
Eco47III	AGCGCT	1 cut(s)	65
Eco53kI	GAGCTC	2 cut(s)	124, 292
EcoICRI	GAGCTC	2 cut(s)	124, 292
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	366, 526
EcoT38I	GRGCYC	3 cut(s)	126, 181, 294
EgeI	GGCGCC	1 cut(s)	430
EheI	GGCGCC	1 cut(s)	430
ErhI	CCWWGG	2 cut(s)	366, 526
FaeI	CATG	4 cut(s)	40, 259, 679, 721
FaiI	YATR	5 cut(s)	38, 257, 561, 677, 719
FatI	CATG	4 cut(s)	36, 255, 675, 717
FauI	CCCGC	1 cut(s)	188
FbaI	TGATCA	1 cut(s)	672
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
FokI	GGATG	3 cut(s)	501, 506, 737
FriOI	GRGCYC	3 cut(s)	126, 181, 294
Fsp4HI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
GlaI	GCGC	7 cut(s)	20, 65, 187, 197, 335, 430, 437
GluI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
HaeII	RGCGCY	2 cut(s)	67, 432
HaeIII	GGCC	4 cut(s)	5, 41, 59, 446
HapII	CCGG	2 cut(s)	357, 426
HhaI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	40, 259, 679, 721
Hin6I	GCGC	7 cut(s)	19, 64, 186, 196, 334, 429, 436
HinP1I	GCGC	7 cut(s)	19, 64, 186, 196, 334, 429, 436
HinfI	GANTC	5 cut(s)	313, 329, 362, 565, 650
HpaII	CCGG	2 cut(s)	357, 426
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	176, 381, 715
Hpy188III	TCNNGA	6 cut(s)	91, 283, 421, 482, 578, 706
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	4 cut(s)	92, 134, 245, 311
HpyAV	CCTTC	3 cut(s)	88, 214, 382
HpyCH4III	ACNGT	3 cut(s)	130, 404, 584
HpyCH4IV	ACGT	3 cut(s)	30, 168, 249
HpyCH4V	TGCA	4 cut(s)	591, 626, 679, 721
HpyF3I	CTNAG	4 cut(s)	414, 450, 480, 765
HpySE526I	ACGT	3 cut(s)	30, 168, 249
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	4 cut(s)	40, 259, 679, 721
HspAI	GCGC	7 cut(s)	19, 64, 186, 196, 334, 429, 436
KasI	GGCGCC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	672
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	4 cut(s)	258, 272, 279, 672
LmnI	GCTCC	4 cut(s)	121, 136, 176, 690
Lsp1109I	GCAGC	2 cut(s)	309, 463
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	3 cut(s)	30, 168, 249
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	260, 274, 281, 674
MboI	GATC	4 cut(s)	258, 272, 279, 672
MboII	GAAGA	1 cut(s)	137
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	4 cut(s)	126, 181, 294, 458
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	1 cut(s)	621
MluNI	TGGCCA	1 cut(s)	41
Mly113I	GGCGCC	1 cut(s)	429
MlyI	GAGTC	3 cut(s)	323, 356, 659
MmeI	TCCRAC	1 cut(s)	612
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
MseI	TTAA	1 cut(s)	744
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	3 cut(s)	192, 234, 449
MspI	CCGG	2 cut(s)	357, 426
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
NarI	GGCGCC	1 cut(s)	429
NdeII	GATC	4 cut(s)	258, 272, 279, 672
NlaIII	CATG	4 cut(s)	40, 259, 679, 721
NlaIV	GGNNCC	3 cut(s)	178, 430, 507
NmeAIII	GCCGAG	4 cut(s)	76, 85, 326, 457
NspI	RCATGY	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 246
PfeI	GAWTC	2 cut(s)	313, 565
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	8 cut(s)	7, 18, 185, 233, 236, 324, 448, 478
PleI	GAGTC	3 cut(s)	323, 356, 658
PluTI	GGCGCC	1 cut(s)	432
PpsI	GAGTC	3 cut(s)	323, 356, 658
Psp124BI	GAGCTC	2 cut(s)	126, 294
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	3 cut(s)	178, 430, 507
PspPI	GGNCC	1 cut(s)	708
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	192
RsaI	GTAC	2 cut(s)	269, 656
RsaNI	GTAC	2 cut(s)	268, 655
SacI	GAGCTC	2 cut(s)	126, 294
SacII	CCGCGG	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	744
SatI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
Sau3AI	GATC	4 cut(s)	258, 272, 279, 672
Sau96I	GGNCC	1 cut(s)	708
SchI	GAGTC	3 cut(s)	323, 356, 659
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	4 cut(s)	126, 181, 294, 458
SfaNI	GCATC	1 cut(s)	207
SfoI	GGCGCC	1 cut(s)	430
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	708
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	1 cut(s)	621
SspDI	GGCGCC	1 cut(s)	428
SstI	GAGCTC	2 cut(s)	126, 294
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	2 cut(s)	366, 526
TaaI	ACNGT	3 cut(s)	130, 404, 584
TaiI	ACGT	3 cut(s)	33, 171, 252
TaqI	TCGA	6 cut(s)	81, 90, 132, 213, 282, 327
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	1 cut(s)	621
TauI	GCSGC	6 cut(s)	8, 19, 186, 234, 237, 449
TfiI	GAWTC	2 cut(s)	313, 565
Tru1I	TTAA	1 cut(s)	744
Tru9I	TTAA	1 cut(s)	744
TscAI	CASTG	3 cut(s)	469, 645, 769
TseI	GCWGC	2 cut(s)	322, 476
TspDTI	ATGAA	2 cut(s)	401, 630
TspGWI	ACGGA	2 cut(s)	142, 677
TspRI	CASTG	3 cut(s)	469, 645, 769
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	708
XceI	RCATGY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.