Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0007005

Physical Location & Seq

Genomic Coordinates Reverse (-)

64946169 .. 64948788

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG456900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCGCCCCCACGCCGCGCGAGGAGAACGTCTACATGGCCAAGCTCGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCGTCGAGAAGGTCTCCGCCTCCGCCGACAAGGAGGAGCTCACCGTCGAGGAGCGTAATCTTCTTTCCGTTGCTTACAAGAACGTCATCGGAGCCCGCCGCGCCAGCTGGCGCATCATTTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGACGACCACGTCAGCATGATCCGCGAGTACCGATCCAAGATCGAGACCGAGCTCTCCAAAATCTGCGACGGGATTCTCAAGCTGCTCGACTCGCGCCTCATTCCCTCGGCGTTTTCCGGCGACTCCAAGGTGTTTTATCTGAAAATGAAGGGAGATTACCACCGTTACCTGGCTGAGTTCAAGACCGGCGCCGAGCGCAAGGAGGCCGCTGAGAGCACCCTCACTGCCTACAAGGCTGCTCAGGATATTGCCAATGCTGAACTGGCACCAACACATCCCATCCGCCTTGGACTTGCCCTCAACTTCTCTGTGTTTTACTATGAGATTCTCAACTCTCCTGACCGTGCTTGCAATCTCGCCAAGCAGGTAACAATTGATCCAATTTCGACTTCAATTACTGAACCCGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0019222 GO:0023052 GO:0031090 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

217

Amino Acids

24.49

Weight (kDa)

5.21

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	13 - 208	1.5e-85	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35160 AT1G35160 AT1G78300 AT4G09000 AT4G09000
fragaria_vesca	FvH4_5g36710
malus_domestica	MD00G1018600.v1.1 MD08G1187400.v1.1 MD10G1084500.v1.1 MD15G1373400.v1.1
prunus_persica	Prupe.1G521900_v2.0.a1 Prupe.8G064700_v2.0.a1
pyrus_communis	pycom05g06310 pycom08g16100 pycom15g33450
rosa_chinensis	RchiOBHm_Chr7g0242691
rosa_laevigata	RLG00000000887
rosa_multiflora	Rmu_sc0017298.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222580
rosa_rugosa	Rorug07G0316300
rosa_samantha	Rh7AG471300 Rh7BG441600 Rh7CG488300 Rh7DG456900
rosa_wichuraiana	Rw7G039230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	595
AccB1I	GGYRCC	2 cut(s)	428, 505
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
AclWI	GGATC	4 cut(s)	253, 267, 611, 641
AcoI	YGGCCR	2 cut(s)	3, 39
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	269
AfeI	AGCGCT	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	2 cut(s)	421, 633
AjiI	CACGTC	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	408
AjuI	GAANNNNNNNTTGG	2 cut(s)	613, 645
AluBI	AGCT	5 cut(s)	46, 124, 192, 292, 322
AluI	AGCT	5 cut(s)	46, 124, 192, 292, 322
Alw21I	GWGCWC	3 cut(s)	126, 294, 458
Alw26I	GTCTC	2 cut(s)	103, 278
AlwI	GGATC	4 cut(s)	253, 267, 611, 641
Aor51HI	AGCGCT	1 cut(s)	65
AoxI	GGCC	4 cut(s)	3, 39, 57, 444
ApeKI	GCWGC	2 cut(s)	322, 476
AspLEI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
AsuHPI	GGTGA	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	2 cut(s)	428, 505
BanII	GRGCYC	3 cut(s)	126, 181, 294
BarI	GAAGNNNNNNTAC	2 cut(s)	380, 412
Bbv12I	GWGCWC	3 cut(s)	126, 294, 458
BbvI	GCAGC	2 cut(s)	309, 463
BccI	CCATC	2 cut(s)	70, 527
BciT130I	CCWGG	1 cut(s)	410
BcoDI	GTCTC	2 cut(s)	103, 278
BfoI	RGCGCY	2 cut(s)	67, 432
BfuAI	ACCTGC	1 cut(s)	595
BglI	GCCNNNNNGGC	2 cut(s)	56, 473
BisI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
BlsI	GCNGC	8 cut(s)	7, 18, 185, 233, 236, 324, 448, 478
Bme1390I	CCNGG	1 cut(s)	410
BmgBI	CACGTC	1 cut(s)	250
BmiI	GGNNCC	3 cut(s)	178, 430, 507
BmrFI	CCNGG	1 cut(s)	410
BmsI	GCATC	1 cut(s)	207
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu10I	CCTNAGC	1 cut(s)	480
BpuEI	CTTGAG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	429
BsaI	GGTCTC	2 cut(s)	103, 278
BsaJI	CCNNGG	4 cut(s)	232, 345, 366, 526
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	4 cut(s)	232, 345, 366, 526
BseGI	GGATG	2 cut(s)	514, 519
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMII	CTCAG	3 cut(s)	405, 441, 494
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	5 cut(s)	38, 86, 134, 149, 239
BseXI	GCAGC	2 cut(s)	309, 463
Bsh1236I	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
Bsh1285I	CGRYCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	5, 41, 59, 446
BshNI	GGYRCC	2 cut(s)	428, 505
BsiEI	CGRYCG	1 cut(s)	213
BsiHKAI	GWGCWC	3 cut(s)	126, 294, 458
BsiSI	CCGG	2 cut(s)	357, 426
BslI	CCNNNNNNNGG	1 cut(s)	409
BsmAI	GTCTC	2 cut(s)	103, 278
BsnI	GGCC	4 cut(s)	5, 41, 59, 446
Bso31I	GGTCTC	2 cut(s)	103, 278
Bsp1286I	GDGCHC	4 cut(s)	126, 181, 294, 458
Bsp143I	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
BspANI	GGCC	4 cut(s)	5, 41, 59, 446
BspCNI	CTCAG	3 cut(s)	406, 442, 493
BspFNI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
BspLI	GGNNCC	3 cut(s)	178, 430, 507
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	4 cut(s)	253, 267, 611, 641
BspT107I	GGYRCC	2 cut(s)	428, 505
BspTNI	GGTCTC	2 cut(s)	103, 278
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	232, 345, 366, 526
BssMI	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	366, 526
Bst2UI	CCWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	130, 404, 584
BstACI	GRCGYC	1 cut(s)	429
BstC8I	GCNNGC	6 cut(s)	48, 57, 181, 190, 194, 589
BstDEI	CTNAG	3 cut(s)	414, 450, 480
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	2 cut(s)	514, 519
BstFNI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
BstH2I	RGCGCY	2 cut(s)	67, 432
BstHHI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
BstKTI	GATC	6 cut(s)	213, 261, 275, 282, 619, 649
BstMAI	GTCTC	2 cut(s)	103, 278
BstMBI	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
BstMCI	CGRYCG	1 cut(s)	213
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstUI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
BstV1I	GCAGC	2 cut(s)	309, 463
BsuRI	GGCC	4 cut(s)	5, 41, 59, 446
BtgI	CCRYGG	1 cut(s)	232
BtrI	CACGTC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	514, 519
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	1 cut(s)	462
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	6 cut(s)	48, 57, 181, 190, 194, 589
CfoI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
Cfr10I	RCCGGY	1 cut(s)	425
Cfr42I	CCGCGG	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	37, 256
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	3 cut(s)	414, 450, 480
DinI	GGCGCC	1 cut(s)	430
DpnI	GATC	6 cut(s)	212, 260, 274, 281, 618, 648
DpnII	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	3, 39
EciI	GGCGGA	3 cut(s)	91, 97, 512
Ecl136II	GAGCTC	2 cut(s)	124, 292
Eco130I	CCWWGG	2 cut(s)	366, 526
Eco24I	GRGCYC	3 cut(s)	126, 181, 294
Eco31I	GGTCTC	2 cut(s)	103, 278
Eco47III	AGCGCT	1 cut(s)	65
Eco53kI	GAGCTC	2 cut(s)	124, 292
EcoICRI	GAGCTC	2 cut(s)	124, 292
EcoRII	CCWGG	1 cut(s)	408
EcoT14I	CCWWGG	2 cut(s)	366, 526
EcoT38I	GRGCYC	3 cut(s)	126, 181, 294
EgeI	GGCGCC	1 cut(s)	430
EheI	GGCGCC	1 cut(s)	430
ErhI	CCWWGG	2 cut(s)	366, 526
FaeI	CATG	2 cut(s)	40, 259
FaiI	YATR	3 cut(s)	38, 257, 561
FatI	CATG	2 cut(s)	36, 255
FauI	CCCGC	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
FokI	GGATG	2 cut(s)	501, 506
FriOI	GRGCYC	3 cut(s)	126, 181, 294
Fsp4HI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
GlaI	GCGC	7 cut(s)	20, 65, 187, 197, 335, 430, 437
GluI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
HaeII	RGCGCY	2 cut(s)	67, 432
HaeIII	GGCC	4 cut(s)	5, 41, 59, 446
HapII	CCGG	2 cut(s)	357, 426
HhaI	GCGC	7 cut(s)	21, 66, 188, 198, 336, 431, 438
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	2 cut(s)	40, 259
Hin6I	GCGC	7 cut(s)	19, 64, 186, 196, 334, 429, 436
HinP1I	GCGC	7 cut(s)	19, 64, 186, 196, 334, 429, 436
HinfI	GANTC	4 cut(s)	313, 329, 362, 565
HpaII	CCGG	2 cut(s)	357, 426
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	176, 381
Hpy188III	TCNNGA	5 cut(s)	91, 283, 421, 482, 578
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	4 cut(s)	92, 134, 245, 311
HpyAV	CCTTC	3 cut(s)	88, 214, 382
HpyCH4III	ACNGT	3 cut(s)	130, 404, 584
HpyCH4IV	ACGT	3 cut(s)	30, 168, 249
HpyCH4V	TGCA	1 cut(s)	591
HpyF3I	CTNAG	3 cut(s)	414, 450, 480
HpySE526I	ACGT	3 cut(s)	30, 168, 249
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	2 cut(s)	40, 259
HspAI	GCGC	7 cut(s)	19, 64, 186, 196, 334, 429, 436
KasI	GGCGCC	1 cut(s)	428
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
LmnI	GCTCC	3 cut(s)	121, 136, 176
Lsp1109I	GCAGC	2 cut(s)	309, 463
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	3 cut(s)	30, 168, 249
MaeIII	GTNAC	2 cut(s)	404, 607
MalI	GATC	6 cut(s)	212, 260, 274, 281, 618, 648
MboI	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
MboII	GAAGA	1 cut(s)	137
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	4 cut(s)	126, 181, 294, 458
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	3 cut(s)	612, 621, 633
MluNI	TGGCCA	1 cut(s)	41
Mly113I	GGCGCC	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	323, 356
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	3 cut(s)	192, 234, 449
MspI	CCGG	2 cut(s)	357, 426
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	1 cut(s)	410
MvnI	CGCG	6 cut(s)	19, 21, 186, 234, 264, 334
NarI	GGCGCC	1 cut(s)	429
NdeII	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
NlaIII	CATG	2 cut(s)	40, 259
NlaIV	GGNNCC	3 cut(s)	178, 430, 507
NmeAIII	GCCGAG	4 cut(s)	76, 85, 326, 457
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 246
PfeI	GAWTC	2 cut(s)	313, 565
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	8 cut(s)	7, 18, 185, 233, 236, 324, 448, 478
Ple19I	CGATCG	1 cut(s)	213
PleI	GAGTC	2 cut(s)	323, 356
PluTI	GGCGCC	1 cut(s)	432
PpsI	GAGTC	2 cut(s)	323, 356
Psp124BI	GAGCTC	2 cut(s)	126, 294
Psp6I	CCWGG	1 cut(s)	408
PspGI	CCWGG	1 cut(s)	408
PspN4I	GGNNCC	3 cut(s)	178, 430, 507
PsyI	GACNNNGTC	1 cut(s)	248
PvuI	CGATCG	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	192
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacI	GAGCTC	2 cut(s)	126, 294
SacII	CCGCGG	1 cut(s)	235
SatI	GCNGC	8 cut(s)	6, 17, 184, 232, 235, 323, 447, 477
Sau3AI	GATC	6 cut(s)	210, 258, 272, 279, 616, 646
SchI	GAGTC	2 cut(s)	323, 356
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	4 cut(s)	126, 181, 294, 458
SfaNI	GCATC	1 cut(s)	207
SfoI	GGCGCC	1 cut(s)	430
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	3 cut(s)	612, 621, 633
SspDI	GGCGCC	1 cut(s)	428
SstI	GAGCTC	2 cut(s)	126, 294
StyD4I	CCNGG	1 cut(s)	408
StyI	CCWWGG	2 cut(s)	366, 526
TaaI	ACNGT	3 cut(s)	130, 404, 584
TaiI	ACGT	3 cut(s)	33, 171, 252
TaqI	TCGA	8 cut(s)	81, 90, 132, 209, 213, 282, 327, 626
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	3 cut(s)	612, 621, 633
TauI	GCSGC	6 cut(s)	8, 19, 186, 234, 237, 449
TfiI	GAWTC	2 cut(s)	313, 565
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	2 cut(s)	322, 476
TspDTI	ATGAA	1 cut(s)	401
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	469
Tth111I	GACNNNGTC	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.