Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007005

Physical Location & Seq

Genomic Coordinates Forward (+)

32873243 .. 32874781

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33450.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTCTCCTTCTCCCAACGCAATTATCGCTCCACTACCCCCAAAAATAACACCCACCGTTTCCCCTCAAACCTCAAATCTCTCCTCTCCTTCCCTAAACCAAAAATCACAGAGTCCCTCTCAGATCTCCAGATCCAATCCTTCGACGACCTCCGAAGCTCGAACAACAATGGCGGCAACCACCCCCTCCCCCCGCGAAGAGAACGTCTACATGGCCAAACTCGCCGAGCAAGCCGAGCGCTACGAGGAGATGGTCGAGTTCGTCGAGAAGGTCTCCGCCTCCGCCGAGAAAGAGGAGCTCACCGTCGAGGAGCGCAACCTCCTCTCCGTTGCCTACAAGAACGTCATCGGCGCCCGCCGTGCCTCCTGGCGCATCATCTCCTCCATCGAGCAGAAGGAGGAGAGCCGCGGCAACGATGACCACGTCGCCTTGATCCGCGACTACCGATCCAAGATCGAGACCGAGCTCTCCAACATCTGCGACGGCATTCTCAAGCTCCTTGACTCCAGGCTCATCCCCTCCGCCTGCGCCGGCGACTCCAAGGTCTTTTATCTCAAGATGAAGGGCGATTACCACCGTTATCTTGCCGAGTTCAAGACCGGCGCTGAGCGCAAGGAGGCCGCAGAAAGCACCCTGTCCGCCTACAAGGCTGCTCAGGACATTGCCAATGCCGAACTGGCGCCAACACATCCAATCCGCCTGGGGTTGGCTCTCAACTTCTCGGTGTTTTACTATGAGATTCTGAACTCTCCTGACCGCGCCTGCAGTCTTGCGAAACAGGCTTTTGATGAGGCGATCGCAGAATTGGACACTCTCGGAGAGGAGTCATACAAGGACAGCACTTTGATAATGCAACTTCTCCGTGATAACCTCACCCTGTGGACCTCTGACATGCAGGACGATGGGGCTGATGACATTAAAGAAGCAGCGCCCAAGCCCACCGAGGAACCAAAGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0019222 GO:0023052 GO:0031090 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043401 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071944 GO:0098588 GO:0098805 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

320

Amino Acids

35.36

Weight (kDa)

4.92

Isoelectric Point (pI)

62.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35160 AT1G35160 AT1G78300 AT4G09000 AT4G09000
fragaria_vesca	FvH4_5g36710
malus_domestica	MD00G1018600.v1.1 MD08G1187400.v1.1 MD10G1084500.v1.1 MD15G1373400.v1.1
prunus_persica	Prupe.1G521900_v2.0.a1 Prupe.8G064700_v2.0.a1
pyrus_communis	pycom05g06310 pycom08g16100 pycom15g33450
rosa_chinensis	RchiOBHm_Chr7g0242691
rosa_laevigata	RLG00000000887
rosa_multiflora	Rmu_sc0017298.1_g000001
rosa_roxburghii	Rroxscaffold_3G00222580
rosa_rugosa	Rorug07G0316300
rosa_samantha	Rh7AG471300 Rh7BG441600 Rh7CG488300 Rh7DG456900
rosa_wichuraiana	Rw7G039230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	542
AccB1I	GGYRCC	2 cut(s)	350, 679
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	4 cut(s)	195, 408, 438, 759
AclWI	GGATC	3 cut(s)	126, 427, 441
AcoI	YGGCCR	1 cut(s)	213
AcyI	GRCGYC	2 cut(s)	351, 680
AdeI	CACNNNGTG	1 cut(s)	879
AfeI	AGCGCT	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	1 cut(s)	595
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	365, 506, 699
AluBI	AGCT	4 cut(s)	158, 298, 466, 496
AluI	AGCT	4 cut(s)	158, 298, 466, 496
Alw21I	GWGCWC	2 cut(s)	300, 468
Alw26I	GTCTC	3 cut(s)	9, 277, 452
AlwI	GGATC	3 cut(s)	126, 427, 441
Aor51HI	AGCGCT	1 cut(s)	239
AoxI	GGCC	2 cut(s)	213, 618
ApeKI	GCWGC	2 cut(s)	650, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
AsiSI	GCGATCGC	1 cut(s)	798
AspS9I	GGNCC	1 cut(s)	882
AsuHPI	GGTGA	2 cut(s)	292, 865
AvaII	GGWCC	1 cut(s)	882
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	2 cut(s)	350, 679
BanII	GRGCYC	2 cut(s)	300, 468
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
Bbv12I	GWGCWC	2 cut(s)	300, 468
BbvI	GCAGC	2 cut(s)	637, 938
BccI	CCATC	3 cut(s)	244, 392, 896
BceAI	ACGGC	2 cut(s)	342, 499
BciT130I	CCWGG	3 cut(s)	367, 508, 701
BcoDI	GTCTC	3 cut(s)	9, 277, 452
BfmI	CTRYAG	1 cut(s)	763
BfoI	RGCGCY	5 cut(s)	241, 354, 606, 683, 932
BglI	GCCNNNNNGGC	2 cut(s)	647, 677
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	6 cut(s)	174, 406, 409, 621, 651, 927
BlpI	GCTNAGC	1 cut(s)	606
BlsI	GCNGC	6 cut(s)	175, 407, 410, 622, 652, 928
Bme1390I	CCNGG	3 cut(s)	367, 508, 701
Bme18I	GGWCC	1 cut(s)	882
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	882
BmiI	GGNNCC	3 cut(s)	352, 681, 948
BmrFI	CCNGG	3 cut(s)	367, 508, 701
BmsI	GCATC	1 cut(s)	381
BplI	GAGNNNNNCTC	4 cut(s)	103, 135, 257, 289
BpmI	CTGGAG	2 cut(s)	112, 490
Bpu10I	CCTNAGC	1 cut(s)	654
Bpu1102I	GCTNAGC	1 cut(s)	606
BpuEI	CTTGAG	2 cut(s)	476, 539
BsaHI	GRCGYC	2 cut(s)	351, 680
BsaI	GGTCTC	2 cut(s)	277, 452
BsaJI	CCNNGG	4 cut(s)	406, 540, 700, 942
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse118I	RCCGGY	2 cut(s)	530, 599
Bse1I	ACTGG	1 cut(s)	681
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	3 cut(s)	367, 508, 701
BseDI	CCNNGG	4 cut(s)	406, 540, 700, 942
BseGI	GGATG	2 cut(s)	513, 688
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	3 cut(s)	134, 597, 668
BseNI	ACTGG	1 cut(s)	681
BseRI	GAGGAG	8 cut(s)	73, 260, 308, 311, 323, 370, 413, 836
BseXI	GCAGC	2 cut(s)	637, 938
Bsh1236I	CGCG	4 cut(s)	195, 408, 438, 759
Bsh1285I	CGRYCG	1 cut(s)	798
BshFI	GGCC	2 cut(s)	215, 620
BshNI	GGYRCC	2 cut(s)	350, 679
BsiEI	CGRYCG	1 cut(s)	798
BsiHKAI	GWGCWC	2 cut(s)	300, 468
BsiSI	CCGG	2 cut(s)	531, 600
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	3 cut(s)	9, 277, 452
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	486
BsnI	GGCC	2 cut(s)	215, 620
Bso31I	GGTCTC	2 cut(s)	277, 452
Bsp1286I	GDGCHC	2 cut(s)	300, 468
Bsp143I	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
Bsp1720I	GCTNAGC	1 cut(s)	606
BspANI	GGCC	2 cut(s)	215, 620
BspCNI	CTCAG	3 cut(s)	133, 598, 667
BspFNI	CGCG	4 cut(s)	195, 408, 438, 759
BspLI	GGNNCC	3 cut(s)	352, 681, 948
BspMAI	CTGCAG	1 cut(s)	767
BspPI	GGATC	3 cut(s)	126, 427, 441
BspT107I	GGYRCC	2 cut(s)	350, 679
BspTNI	GGTCTC	2 cut(s)	277, 452
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	2 cut(s)	530, 599
BsrI	ACTGG	1 cut(s)	681
BssAI	RCCGGY	2 cut(s)	530, 599
BssECI	CCNNGG	4 cut(s)	406, 540, 700, 942
BssMI	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
BssNI	GRCGYC	2 cut(s)	351, 680
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	3 cut(s)	367, 508, 701
Bst4CI	ACNGT	3 cut(s)	58, 304, 578
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	2 cut(s)	351, 680
BstC8I	GCNNGC	5 cut(s)	231, 355, 526, 532, 763
BstDEI	CTNAG	3 cut(s)	120, 606, 654
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	513, 688
BstFNI	CGCG	4 cut(s)	195, 408, 438, 759
BstH2I	RGCGCY	5 cut(s)	241, 354, 606, 683, 932
BstKTI	GATC	6 cut(s)	126, 134, 435, 449, 456, 798
BstMAI	GTCTC	3 cut(s)	9, 277, 452
BstMBI	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
BstMCI	CGRYCG	1 cut(s)	798
BstMWI	GCNNNNNNNGC	9 cut(s)	26, 221, 230, 235, 359, 609, 647, 677, 779
BstNI	CCWGG	3 cut(s)	367, 508, 701
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	3 cut(s)	365, 506, 699
BstSFI	CTRYAG	1 cut(s)	763
BstUI	CGCG	4 cut(s)	195, 408, 438, 759
BstV1I	GCAGC	2 cut(s)	637, 938
BstX2I	RGATCY	2 cut(s)	123, 131
BstYI	RGATCY	2 cut(s)	123, 131
BsuRI	GGCC	2 cut(s)	215, 620
BtgI	CCRYGG	1 cut(s)	406
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	513, 688
Cac8I	GCNNGC	5 cut(s)	231, 355, 526, 532, 763
Cfr10I	RCCGGY	2 cut(s)	530, 599
Cfr13I	GGNCC	1 cut(s)	882
Cfr42I	CCGCGG	1 cut(s)	409
CviAII	CATG	2 cut(s)	211, 892
DdeI	CTNAG	3 cut(s)	120, 606, 654
DinI	GGCGCC	2 cut(s)	352, 681
DpnI	GATC	6 cut(s)	125, 133, 434, 448, 455, 797
DpnII	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
DraIII	CACNNNGTG	1 cut(s)	879
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	5 cut(s)	265, 271, 511, 628, 686
Ecl136II	GAGCTC	2 cut(s)	298, 466
Eco130I	CCWWGG	1 cut(s)	540
Eco24I	GRGCYC	2 cut(s)	300, 468
Eco31I	GGTCTC	2 cut(s)	277, 452
Eco47I	GGWCC	1 cut(s)	882
Eco47III	AGCGCT	1 cut(s)	239
Eco53kI	GAGCTC	2 cut(s)	298, 466
EcoICRI	GAGCTC	2 cut(s)	298, 466
EcoRII	CCWGG	3 cut(s)	365, 506, 699
EcoT14I	CCWWGG	1 cut(s)	540
EcoT38I	GRGCYC	2 cut(s)	300, 468
EgeI	GGCGCC	2 cut(s)	352, 681
EheI	GGCGCC	2 cut(s)	352, 681
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	2 cut(s)	214, 895
FaiI	YATR	4 cut(s)	212, 735, 829, 893
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	2 cut(s)	210, 891
FauI	CCCGC	2 cut(s)	200, 362
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	6 cut(s)	174, 406, 409, 621, 651, 927
FokI	GGATG	2 cut(s)	500, 675
FriOI	GRGCYC	2 cut(s)	300, 468
Fsp4HI	GCNGC	6 cut(s)	174, 406, 409, 621, 651, 927
GluI	GCNGC	6 cut(s)	174, 406, 409, 621, 651, 927
GsuI	CTGGAG	2 cut(s)	112, 490
HaeII	RGCGCY	5 cut(s)	241, 354, 606, 683, 932
HaeIII	GGCC	2 cut(s)	215, 620
HapII	CCGG	2 cut(s)	531, 600
Hin1I	GRCGYC	2 cut(s)	351, 680
Hin1II	CATG	2 cut(s)	214, 895
HinfI	GANTC	5 cut(s)	112, 503, 536, 739, 824
HpaII	CCGG	2 cut(s)	531, 600
HphI	GGTGA	2 cut(s)	292, 865
Hpy166II	GTNNAC	2 cut(s)	208, 882
Hpy188I	TCNGA	5 cut(s)	123, 154, 744, 818, 889
Hpy188III	TCNNGA	7 cut(s)	129, 265, 457, 556, 595, 656, 752
Hpy8I	GTNNAC	2 cut(s)	208, 882
Hpy99I	CGWCG	5 cut(s)	148, 266, 308, 428, 485
HpyAV	CCTTC	6 cut(s)	18, 99, 150, 262, 388, 556
HpyCH4III	ACNGT	3 cut(s)	58, 304, 578
HpyCH4IV	ACGT	3 cut(s)	204, 342, 423
HpyCH4V	TGCA	3 cut(s)	765, 853, 895
HpyF10VI	GCNNNNNNNGC	9 cut(s)	26, 221, 230, 235, 359, 609, 647, 677, 779
HpyF3I	CTNAG	3 cut(s)	120, 606, 654
HpySE526I	ACGT	3 cut(s)	204, 342, 423
Hsp92I	GRCGYC	2 cut(s)	351, 680
Hsp92II	CATG	2 cut(s)	214, 895
KasI	GGCGCC	2 cut(s)	350, 679
KroI	GCCGGC	1 cut(s)	530
KroNI	GCCGGC	1 cut(s)	532
KspI	CCGCGG	1 cut(s)	409
Kzo9I	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
LmnI	GCTCC	4 cut(s)	34, 295, 310, 501
Lsp1109I	GCAGC	2 cut(s)	637, 938
LweI	GCATC	1 cut(s)	381
MaeII	ACGT	3 cut(s)	204, 342, 423
MalI	GATC	6 cut(s)	125, 133, 434, 448, 455, 797
MboI	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
MboII	GAAGA	1 cut(s)	209
MflI	RGATCY	2 cut(s)	123, 131
MhlI	GDGCHC	2 cut(s)	300, 468
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	2 cut(s)	21, 803
MluNI	TGGCCA	1 cut(s)	215
Mly113I	GGCGCC	2 cut(s)	351, 680
MlyI	GAGTC	4 cut(s)	121, 497, 530, 833
MmeI	TCCRAC	1 cut(s)	495
Mox20I	TGGCCA	1 cut(s)	215
MreI	CGCCGGCG	1 cut(s)	530
MroNI	GCCGGC	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	1 cut(s)	918
Msp20I	TGGCCA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	2 cut(s)	531, 600
MspR9I	CCNGG	3 cut(s)	367, 508, 701
Mva1269I	GAATGC	1 cut(s)	486
MvaI	CCWGG	3 cut(s)	367, 508, 701
MvnI	CGCG	4 cut(s)	195, 408, 438, 759
MwoI	GCNNNNNNNGC	9 cut(s)	26, 221, 230, 235, 359, 609, 647, 677, 779
NaeI	GCCGGC	1 cut(s)	532
NarI	GGCGCC	2 cut(s)	351, 680
NdeII	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
NgoMIV	GCCGGC	1 cut(s)	530
NlaIII	CATG	2 cut(s)	214, 895
NlaIV	GGNNCC	3 cut(s)	352, 681, 948
NmeAIII	GCCGAG	4 cut(s)	250, 259, 310, 613
NspI	RCATGY	1 cut(s)	895
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 420
PctI	GAATGC	1 cut(s)	486
PdiI	GCCGGC	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	739
PflFI	GACNNNGTC	1 cut(s)	422
PkrI	GCNGC	6 cut(s)	175, 407, 410, 622, 652, 928
Ple19I	CGATCG	1 cut(s)	798
PleI	GAGTC	4 cut(s)	120, 497, 530, 832
PluTI	GGCGCC	2 cut(s)	354, 683
PpsI	GAGTC	4 cut(s)	120, 497, 530, 832
Psp124BI	GAGCTC	2 cut(s)	300, 468
Psp6I	CCWGG	3 cut(s)	365, 506, 699
PspGI	CCWGG	3 cut(s)	365, 506, 699
PspN4I	GGNNCC	3 cut(s)	352, 681, 948
PspPI	GGNCC	1 cut(s)	882
PstI	CTGCAG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	123, 131
PsyI	GACNNNGTC	1 cut(s)	422
PvuI	CGATCG	1 cut(s)	798
RgaI	GCGATCGC	1 cut(s)	798
SacI	GAGCTC	2 cut(s)	300, 468
SacII	CCGCGG	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	6 cut(s)	174, 406, 409, 621, 651, 927
Sau3AI	GATC	6 cut(s)	123, 131, 432, 446, 453, 795
Sau96I	GGNCC	1 cut(s)	882
SchI	GAGTC	4 cut(s)	121, 497, 530, 833
ScrFI	CCNGG	3 cut(s)	367, 508, 701
SduI	GDGCHC	2 cut(s)	300, 468
SfaAI	GCGATCGC	1 cut(s)	798
SfaNI	GCATC	1 cut(s)	381
SfcI	CTRYAG	1 cut(s)	763
SfoI	GGCGCC	2 cut(s)	352, 681
Sfr303I	CCGCGG	1 cut(s)	409
SgfI	GCGATCGC	1 cut(s)	798
SgrAI	CRCCGGYG	1 cut(s)	530
SgrBI	CCGCGG	1 cut(s)	409
SinI	GGWCC	1 cut(s)	882
SmlI	CTYRAG	2 cut(s)	491, 554
SmoI	CTYRAG	2 cut(s)	491, 554
Sse9I	AATT	2 cut(s)	21, 803
SspDI	GGCGCC	2 cut(s)	350, 679
SstI	GAGCTC	2 cut(s)	300, 468
StyD4I	CCNGG	3 cut(s)	365, 506, 699
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	58, 304, 578
TaiI	ACGT	3 cut(s)	207, 345, 426
TaqI	TCGA	7 cut(s)	143, 160, 255, 264, 306, 387, 456
TaqII	GACCGA	1 cut(s)	476
TasI	AATT	2 cut(s)	21, 803
TauI	GCSGC	4 cut(s)	176, 408, 411, 623
TfiI	GAWTC	1 cut(s)	739
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TseI	GCWGC	2 cut(s)	650, 926
TspDTI	ATGAA	1 cut(s)	575
TspGWI	ACGGA	2 cut(s)	316, 851
Tth111I	GACNNNGTC	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	882
XceI	RCATGY	1 cut(s)	895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	673
XmiI	GTMKAC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.