Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013894

Physical Location & Seq

Genomic Coordinates Forward (+)

18486980 .. 18492144

Gene Structure 5165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g18220.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGTGAGAGAAATGAGGGAGGAAATGCCGTACGGTATCGAAGAAGGTGGGAGGGAGGAAGAAGGTGGGTTCCCTAATACCAGTCATAAGAGATTGGTGGTGGTAGGTTACGCTCTTACCTCTAAGAAGATTAAGAGCTTTTTGCAGCCAAAGCTCGAAGGTTTAGCTAGTAATGAAACAAGGGGATATTGTTTGTTGCTATTGATCGATAACAAGCCCCTTTCGGATCAAGGCCCTTTTGACATAGTGCTGCATAAGCTGTCTGGAAAAGAGTGGCGCCAGATTCTTGAGGACTATAGGCAAACACACCCAGAAGTCACCATTCTTGATCCTCCTGATGCCATACAACATTTACACAATCGTCAATCCATGCTCCAGGCTGTTGCCGATTTGAACTTGTCTGATTCTTATGGCAAAGTTGGGGTTCCCAAACAGTTGGTTGTTAAGAAAGATGCATCATCCATCCCTGATGCTGTTGCAAATTTTGGGCTGAAACTACCCATTGTTGCGAAGCCACTGGTCAATGATGGAAGTAAAAAGTCACATGAATTATCACTTGCTTACGATTGGTACTCTCTCCAAAAGCTTGACCCTCCTCTTGTTCTTCAGGAGTTTGTAAACCATGGAGGTGTTCTTTTTAAAGTCTATATAGTTGGTGAAGCTATAAAAGTTGTCAGGCGTTTCTCTTTACCGGATGTTACCAAACGAGAGCTCTCCAAAACGGCTGGAGTATATCATTTTCCGAGGGTTTCTTGTGCTGCAGCGTCAGCAGAAGATGCAGATCTGGACCCATGCATTGCTGAACTTCCTCCGCGACCATTACTTGAGAAACTTGCCAAGGAACTTCGCCGTCGACTGGGCCTGCGATTGTTCAACTTGGATATGATCCGAGAGCATGGGACCAGAGATCGGTTTTATGTCATTGACATTAACTACTTCCCAGGGTATGGGAAAATGCCGGAATATGAGCACATATTCACGGACTTCCTCTTAAGCCTGGTGAAGGGGAAGCACAAAAAGAGATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

344

Amino Acids

38.8

Weight (kDa)

8.71

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08170 AT4G08170
fragaria_vesca	FvH4_5g33450 FvH4_5g33450
malus_domestica	MD08G1211500.v1.1
prunus_persica	Prupe.1G543400_v2.0.a1 Prupe.1G543400_v2.0.a1
pyrus_communis	pycom08g18220
rosa_chinensis	RchiOBHm_Chr7g0232171
rosa_laevigata	RLG00000001380 RLG00000001383
rosa_roxburghii	Rroxscaffold_3G00228700
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7BG398700 Rh7CG445000
rosa_wichuraiana	Rw7G035120 Rw7G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	276
AccB7I	CCANNNNNTGG	1 cut(s)	947
AccI	GTMKAC	1 cut(s)	853
AccII	CGCG	1 cut(s)	814
AciI	CCGC	1 cut(s)	812
AclWI	GGATC	3 cut(s)	234, 323, 880
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	1 cut(s)	590
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	2 cut(s)	32, 572
AfiI	CCNNNNNNNGG	4 cut(s)	856, 909, 947, 1003
AflII	CTTAAG	1 cut(s)	991
AgsI	TTSAA	2 cut(s)	394, 874
AjnI	CCWGG	3 cut(s)	375, 940, 996
AluBI	AGCT	7 cut(s)	138, 154, 167, 259, 586, 662, 712
AluI	AGCT	7 cut(s)	138, 154, 167, 259, 586, 662, 712
Alw21I	GWGCWC	2 cut(s)	714, 972
AlwI	GGATC	3 cut(s)	234, 323, 880
AoxI	GGCC	2 cut(s)	232, 859
ApeKI	GCWGC	4 cut(s)	145, 250, 758, 761
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	4 cut(s)	233, 787, 859, 900
AsuHPI	GGTGA	4 cut(s)	16, 310, 668, 1012
AvaII	GGWCC	2 cut(s)	787, 900
BanI	GGYRCC	1 cut(s)	276
BanII	GRGCYC	1 cut(s)	714
Bbv12I	GWGCWC	2 cut(s)	714, 972
BbvI	GCAGC	4 cut(s)	157, 237, 745, 773
BccI	CCATC	2 cut(s)	470, 521
BceAI	ACGGC	3 cut(s)	13, 738, 834
BciT130I	CCWGG	3 cut(s)	377, 942, 998
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	295, 759
BfoI	RGCGCY	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	991
BglII	AGATCT	2 cut(s)	781, 1022
BisI	GCNGC	4 cut(s)	146, 251, 759, 762
BlsI	GCNGC	4 cut(s)	147, 252, 760, 763
Bme1390I	CCNGG	3 cut(s)	377, 942, 998
Bme18I	GGWCC	2 cut(s)	787, 900
BmgT120I	GGNCC	4 cut(s)	233, 787, 859, 900
BmiI	GGNNCC	5 cut(s)	71, 278, 426, 789, 901
BmrFI	CCNGG	3 cut(s)	377, 942, 998
BmrI	ACTGGG	1 cut(s)	866
BmsI	GCATC	5 cut(s)	328, 442, 460, 464, 766
BmuI	ACTGGG	1 cut(s)	866
BpmI	CTGGAG	2 cut(s)	359, 747
BpuEI	CTTGAG	2 cut(s)	308, 845
Bsa29I	ATCGAT	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	277
BsaJI	CCNNGG	5 cut(s)	622, 743, 837, 940, 941
BsaWI	WCCGGW	1 cut(s)	691
Bsc4I	CCNNNNNNNGG	4 cut(s)	856, 909, 947, 1003
Bse1I	ACTGG	3 cut(s)	81, 522, 861
Bse3DI	GCAATG	1 cut(s)	795
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	3 cut(s)	377, 942, 998
BseCI	ATCGAT	1 cut(s)	207
BseDI	CCNNGG	5 cut(s)	622, 743, 837, 940, 941
BseGI	GGATG	3 cut(s)	458, 462, 700
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	4 cut(s)	856, 909, 947, 1003
BseMI	GCAATG	1 cut(s)	795
BseNI	ACTGG	3 cut(s)	81, 522, 861
BseRI	GAGGAG	1 cut(s)	585
BseXI	GCAGC	4 cut(s)	157, 237, 745, 773
Bsh1236I	CGCG	1 cut(s)	814
BshFI	GGCC	2 cut(s)	234, 861
BshNI	GGYRCC	1 cut(s)	276
BshVI	ATCGAT	1 cut(s)	207
BsiHKAI	GWGCWC	2 cut(s)	714, 972
BsiSI	CCGG	2 cut(s)	692, 959
BsiWI	CGTACG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	4 cut(s)	856, 909, 947, 1003
BsmFI	GGGAC	1 cut(s)	913
BsnI	GGCC	2 cut(s)	234, 861
Bsp1286I	GDGCHC	2 cut(s)	714, 972
Bsp143I	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	1 cut(s)	812
BspANI	GGCC	2 cut(s)	234, 861
BspDI	ATCGAT	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	814
BspLI	GGNNCC	5 cut(s)	71, 278, 426, 789, 901
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	3 cut(s)	234, 323, 880
BspT107I	GGYRCC	1 cut(s)	276
BspTI	CTTAAG	1 cut(s)	991
BsrDI	GCAATG	1 cut(s)	795
BsrI	ACTGG	3 cut(s)	81, 522, 861
BssECI	CCNNGG	5 cut(s)	622, 743, 837, 940, 941
BssMI	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
BssNI	GRCGYC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	622, 837
Bst2UI	CCWGG	3 cut(s)	377, 942, 998
Bst4CI	ACNGT	2 cut(s)	35, 435
BstACI	GRCGYC	1 cut(s)	277
BstAFI	CTTAAG	1 cut(s)	991
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	863
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	622
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstF5I	GGATG	3 cut(s)	458, 462, 700
BstFNI	CGCG	1 cut(s)	814
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	7 cut(s)	207, 229, 331, 784, 888, 910, 1025
BstMBI	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
BstMWI	GCNNNNNNNGC	4 cut(s)	151, 256, 767, 776
BstNI	CCWGG	3 cut(s)	377, 942, 998
BstSCI	CCNGG	3 cut(s)	375, 940, 996
BstSFI	CTRYAG	2 cut(s)	295, 759
BstUI	CGCG	1 cut(s)	814
BstV1I	GCAGC	4 cut(s)	157, 237, 745, 773
BstX2I	RGATCY	2 cut(s)	781, 1022
BstXI	CCANNNNNNTGG	1 cut(s)	436
BstYI	RGATCY	2 cut(s)	781, 1022
Bsu15I	ATCGAT	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	234, 861
BsuTUI	ATCGAT	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	622
BtsCI	GGATG	3 cut(s)	458, 462, 700
BtsIMutI	CAGTG	1 cut(s)	515
Cac8I	GCNNGC	1 cut(s)	863
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	233, 787, 859, 900
ClaI	ATCGAT	1 cut(s)	207
CseI	GACGC	1 cut(s)	753
Csp6I	GTAC	2 cut(s)	31, 571
CviAII	CATG	5 cut(s)	370, 545, 623, 792, 896
CviQI	GTAC	2 cut(s)	31, 571
DdeI	CTNAG	1 cut(s)	123
DinI	GGCGCC	1 cut(s)	278
DpnI	GATC	7 cut(s)	206, 228, 330, 783, 887, 909, 1024
DpnII	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
DraI	TTTAAA	1 cut(s)	640
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	2 cut(s)	622, 837
Eco24I	GRGCYC	1 cut(s)	714
Eco47I	GGWCC	2 cut(s)	787, 900
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	590
EcoICRI	GAGCTC	1 cut(s)	712
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoO109I	RGGNCCY	1 cut(s)	233
EcoRII	CCWGG	3 cut(s)	375, 940, 996
EcoT14I	CCWWGG	2 cut(s)	622, 837
EcoT22I	ATGCAT	2 cut(s)	457, 797
EcoT38I	GRGCYC	1 cut(s)	714
EgeI	GGCGCC	1 cut(s)	278
EheI	GGCGCC	1 cut(s)	278
ErhI	CCWWGG	2 cut(s)	622, 837
FaeI	CATG	5 cut(s)	373, 548, 626, 795, 899
FaqI	GGGAC	1 cut(s)	913
FatI	CATG	5 cut(s)	369, 544, 622, 791, 895
FblI	GTMKAC	1 cut(s)	853
Fnu4HI	GCNGC	4 cut(s)	146, 251, 759, 762
FokI	GGATG	3 cut(s)	445, 449, 707
FriOI	GRGCYC	1 cut(s)	714
Fsp4HI	GCNGC	4 cut(s)	146, 251, 759, 762
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	4 cut(s)	146, 251, 759, 762
GsuI	CTGGAG	2 cut(s)	359, 747
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	234, 861
HapII	CCGG	2 cut(s)	692, 959
HgaI	GACGC	1 cut(s)	753
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	5 cut(s)	373, 548, 626, 795, 899
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	854
HindII	GTYRAC	1 cut(s)	854
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	2 cut(s)	283, 404
HpaII	CCGG	2 cut(s)	692, 959
HphI	GGTGA	4 cut(s)	16, 310, 668, 1012
Hpy166II	GTNNAC	2 cut(s)	619, 854
Hpy188I	TCNGA	4 cut(s)	226, 403, 744, 890
Hpy188III	TCNNGA	6 cut(s)	264, 287, 326, 335, 608, 785
Hpy8I	GTNNAC	2 cut(s)	619, 854
Hpy99I	CGWCG	1 cut(s)	855
HpyAV	CCTTC	4 cut(s)	38, 56, 152, 997
HpyCH4III	ACNGT	2 cut(s)	35, 435
HpyCH4V	TGCA	7 cut(s)	145, 253, 455, 479, 761, 779, 795
HpyF10VI	GCNNNNNNNGC	4 cut(s)	151, 256, 767, 776
HpyF3I	CTNAG	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	5 cut(s)	373, 548, 626, 795, 899
HspAI	GCGC	1 cut(s)	277
KasI	GGCGCC	1 cut(s)	276
Kzo9I	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	4 cut(s)	157, 237, 745, 773
LweI	GCATC	5 cut(s)	328, 442, 460, 464, 766
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	4 cut(s)	107, 316, 540, 697
MalI	GATC	7 cut(s)	206, 228, 330, 783, 887, 909, 1024
MboI	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
MboII	GAAGA	5 cut(s)	53, 71, 139, 596, 785
MflI	RGATCY	2 cut(s)	781, 1022
MhlI	GDGCHC	2 cut(s)	714, 972
MluCI	AATT	2 cut(s)	481, 548
Mly113I	GGCGCC	1 cut(s)	277
Mph1103I	ATGCAT	2 cut(s)	457, 797
MseI	TTAA	5 cut(s)	132, 444, 639, 930, 992
MslI	CAYNNNNRTG	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	991
MspI	CCGG	2 cut(s)	692, 959
MspR9I	CCNGG	3 cut(s)	377, 942, 998
MvaI	CCWGG	3 cut(s)	377, 942, 998
MvnI	CGCG	1 cut(s)	814
MwoI	GCNNNNNNNGC	4 cut(s)	151, 256, 767, 776
NarI	GGCGCC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
NlaIII	CATG	5 cut(s)	373, 548, 626, 795, 899
NlaIV	GGNNCC	5 cut(s)	71, 278, 426, 789, 901
NmuCI	GTSAC	2 cut(s)	316, 540
NsiI	ATGCAT	2 cut(s)	457, 797
PasI	CCCWGGG	1 cut(s)	941
PfeI	GAWTC	2 cut(s)	283, 404
Pfl23II	CGTACG	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	947
PkrI	GCNGC	4 cut(s)	147, 252, 760, 763
PluTI	GGCGCC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	3 cut(s)	375, 940, 996
PspGI	CCWGG	3 cut(s)	375, 940, 996
PspLI	CGTACG	1 cut(s)	30
PspN4I	GGNNCC	5 cut(s)	71, 278, 426, 789, 901
PspPI	GGNCC	4 cut(s)	233, 787, 859, 900
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	781, 1022
RsaI	GTAC	2 cut(s)	32, 572
RsaNI	GTAC	2 cut(s)	31, 571
RseI	CAYNNNNRTG	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	714
SalI	GTCGAC	1 cut(s)	852
SaqAI	TTAA	5 cut(s)	132, 444, 639, 930, 992
SatI	GCNGC	4 cut(s)	146, 251, 759, 762
Sau3AI	GATC	7 cut(s)	204, 226, 328, 781, 885, 907, 1022
Sau96I	GGNCC	4 cut(s)	233, 787, 859, 900
ScrFI	CCNGG	3 cut(s)	377, 942, 998
SduI	GDGCHC	2 cut(s)	714, 972
SfaNI	GCATC	5 cut(s)	328, 442, 460, 464, 766
SfcI	CTRYAG	2 cut(s)	295, 759
SfoI	GGCGCC	1 cut(s)	278
SinI	GGWCC	2 cut(s)	787, 900
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	3 cut(s)	287, 824, 991
SmoI	CTYRAG	3 cut(s)	287, 824, 991
Sse9I	AATT	2 cut(s)	481, 548
SsiI	CCGC	1 cut(s)	812
SspDI	GGCGCC	1 cut(s)	276
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	3 cut(s)	375, 940, 996
StyI	CCWWGG	2 cut(s)	622, 837
TaaI	ACNGT	2 cut(s)	35, 435
TaqI	TCGA	4 cut(s)	39, 156, 207, 853
TasI	AATT	2 cut(s)	481, 548
TfiI	GAWTC	2 cut(s)	283, 404
Tru1I	TTAA	5 cut(s)	132, 444, 639, 930, 992
Tru9I	TTAA	5 cut(s)	132, 444, 639, 930, 992
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	2 cut(s)	316, 540
TseI	GCWGC	4 cut(s)	145, 250, 758, 761
Tsp45I	GTSAC	2 cut(s)	316, 540
TspDTI	ATGAA	2 cut(s)	189, 561
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	947
Vha464I	CTTAAG	1 cut(s)	991
VpaK11BI	GGWCC	2 cut(s)	787, 900
XagI	CCTNNNNNAGG	1 cut(s)	1001
XapI	RAATTY	1 cut(s)	481
XmiI	GTMKAC	1 cut(s)	853
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	2 cut(s)	457, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.