Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0013894

Physical Location & Seq

Genomic Coordinates Reverse (-)

44195929 .. 44200652

Gene Structure 4724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG398700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGAGGGAGGAAATGAGGGACCAATTGGTGTACCGTGAGGGGGAAGAGGAGGCGGAGAAGGAGAAGGACCCGCAACGGTGTCGTATTGGGTTTCCTCATAAGAGGGTTGTCGTCGTGGGTTATGCTCTTACGTCTAAGAAGACCAAGAGCTTCTTGCAGCCCAAGCTTGAAGGTTTAGCTAGAAACAAGGGGATATTATTTGTTGCTATTGATCATAACAGGCCTCTTTCGGATCAAGGCCCTTTTGACATTGTGTTGCATAAGGACTATAGGAAAACACATCCAGAAGTTACTGTTCTTGATCCTCCTGATGCGATACAACCTTTACATAATCGTCAGTCCATGCTCCAGGCTGTTGCTGATATGGACTTGTCTGATTCCTATGGCAAAGTTGGTGTTCCAAGACAATTGGTTATCAAGAGAGATGCATCATCCATCCCTGATGCTGTTACAGATAGTGGGCTGAAACTACCTCTTGTTGCTAAGCCACTGGTGAATGATGGAAGTGTAAAATCCCATCAACTATCACTTGCCTATGATCGATACTCCCTCCAAAAGCTTGAACCCCCTCTTGTTCTTCAGGAGTTTGTAAACCATGGAGGTGTTCTTTTTAAAGTATATATCGTCGGTGAAGCTATAAAAGTGGTCAGACGTTTCTCTTTACCTGATGTCAGTAAAAGAGAGCTTTCTGAAACCGCGGGTGTCTATCGTTTTCCGAGGGTTTCATGTGCTGCAGCTTCAGCAGATGATGCAGATCTGGACCCTAGCATAGCTGAACTTCCTCCACGGCCATTACTCGAGAGACTTGCTAAGGAACTTCGTCGTCGACTGGGTCTGCGGTTATTCAACTTGGACATGATCCGAGAACATGGAACTAGAGATCGGTTTTATGTCATTGACATTAACTACTTCCCTGGGTATGGGAAAATGCCCGAGTATGAACACATATTTACGGACTTCCTATTGAGCCTGGTGGAGGCGAAGTACAAAAAGAGATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

334

Amino Acids

37.98

Weight (kDa)

8.95

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	38 - 106	8.8e-27	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	126 - 322	4.2e-94	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08170 AT4G08170
fragaria_vesca	FvH4_5g33450 FvH4_5g33450
malus_domestica	MD08G1211500.v1.1
prunus_persica	Prupe.1G543400_v2.0.a1 Prupe.1G543400_v2.0.a1
pyrus_communis	pycom08g18220
rosa_chinensis	RchiOBHm_Chr7g0232171
rosa_laevigata	RLG00000001380 RLG00000001383
rosa_roxburghii	Rroxscaffold_3G00228700
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7BG398700 Rh7CG445000
rosa_wichuraiana	Rw7G035120 Rw7G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	826
AccII	CGCG	1 cut(s)	698
AciI	CCGC	5 cut(s)	53, 71, 696, 698, 838
AclWI	GGATC	3 cut(s)	240, 296, 853
AcoI	YGGCCR	1 cut(s)	788
AcuI	CTGAAG	2 cut(s)	563, 723
AfaI	GTAC	2 cut(s)	32, 986
AfiI	CCNNNNNNNGG	3 cut(s)	40, 920, 976
AgsI	TTSAA	3 cut(s)	170, 563, 847
AjnI	CCWGG	3 cut(s)	348, 913, 969
AluBI	AGCT	8 cut(s)	150, 166, 179, 559, 635, 685, 737, 773
AluI	AGCT	8 cut(s)	150, 166, 179, 559, 635, 685, 737, 773
Alw26I	GTCTC	1 cut(s)	796
AlwI	GGATC	3 cut(s)	240, 296, 853
Ama87I	CYCGRG	2 cut(s)	797, 932
AoxI	GGCC	3 cut(s)	221, 238, 788
ApeKI	GCWGC	3 cut(s)	157, 731, 734
AspS9I	GGNCC	4 cut(s)	19, 67, 239, 760
AsuHPI	GGTGA	2 cut(s)	505, 641
AvaI	CYCGRG	2 cut(s)	797, 932
AvaII	GGWCC	3 cut(s)	19, 67, 760
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	169, 718, 746
BccI	CCATC	3 cut(s)	443, 494, 525
BceAI	ACGGC	1 cut(s)	803
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 788, 822
BciT130I	CCWGG	3 cut(s)	350, 915, 971
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	1 cut(s)	796
BfaI	CTAG	3 cut(s)	180, 765, 876
BfmI	CTRYAG	2 cut(s)	268, 732
BglII	AGATCT	2 cut(s)	754, 995
BisI	GCNGC	3 cut(s)	158, 732, 735
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	3 cut(s)	159, 733, 736
Bme1390I	CCNGG	3 cut(s)	350, 915, 971
Bme18I	GGWCC	3 cut(s)	19, 67, 760
BmeT110I	CYCGRG	2 cut(s)	797, 932
BmgT120I	GGNCC	4 cut(s)	19, 67, 239, 760
BmiI	GGNNCC	3 cut(s)	20, 69, 762
BmrFI	CCNGG	3 cut(s)	350, 915, 971
BmrI	ACTGGG	1 cut(s)	839
BmsI	GCATC	5 cut(s)	301, 415, 433, 437, 739
BmuI	ACTGGG	1 cut(s)	839
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	810
Bpu1102I	GCTNAGC	1 cut(s)	483
Bsa29I	ATCGAT	1 cut(s)	541
BsaBI	GATNNNNATC	1 cut(s)	753
BsaJI	CCNNGG	6 cut(s)	595, 696, 716, 785, 913, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	968, 998
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 920, 976
Bse1I	ACTGG	2 cut(s)	495, 834
Bse8I	GATNNNNATC	1 cut(s)	753
BseBI	CCWGG	3 cut(s)	350, 915, 971
BseCI	ATCGAT	1 cut(s)	541
BseDI	CCNNGG	6 cut(s)	595, 696, 716, 785, 913, 914
BseGI	GGATG	3 cut(s)	280, 431, 435
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	3 cut(s)	40, 920, 976
BseNI	ACTGG	2 cut(s)	495, 834
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	169, 718, 746
Bsh1236I	CGCG	1 cut(s)	698
BshFI	GGCC	3 cut(s)	223, 240, 790
BshVI	ATCGAT	1 cut(s)	541
BsiHKCI	CYCGRG	2 cut(s)	797, 932
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	40, 920, 976
BsmAI	GTCTC	1 cut(s)	796
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	223, 240, 790
BsoBI	CYCGRG	2 cut(s)	797, 932
Bsp143I	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
Bsp1720I	GCTNAGC	1 cut(s)	483
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	5 cut(s)	53, 71, 696, 698, 838
BspANI	GGCC	3 cut(s)	223, 240, 790
BspDI	ATCGAT	1 cut(s)	541
BspFNI	CGCG	1 cut(s)	698
BspLI	GGNNCC	3 cut(s)	20, 69, 762
BspMAI	CTGCAG	1 cut(s)	736
BspPI	GGATC	3 cut(s)	240, 296, 853
BsrI	ACTGG	2 cut(s)	495, 834
BssECI	CCNNGG	6 cut(s)	595, 696, 716, 785, 913, 914
BssMI	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	3 cut(s)	350, 915, 971
Bst4CI	ACNGT	3 cut(s)	35, 78, 295
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstDEI	CTNAG	3 cut(s)	135, 483, 810
BstDSI	CCRYGG	3 cut(s)	595, 696, 785
BstENI	CCTNNNNNAGG	1 cut(s)	974
BstF5I	GGATG	3 cut(s)	280, 431, 435
BstFNI	CGCG	1 cut(s)	698
BstKTI	GATC	8 cut(s)	214, 235, 304, 541, 757, 861, 883, 998
BstMAI	GTCTC	1 cut(s)	796
BstMBI	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 740, 749
BstNI	CCWGG	3 cut(s)	350, 915, 971
BstSCI	CCNGG	3 cut(s)	348, 913, 969
BstSFI	CTRYAG	2 cut(s)	268, 732
BstUI	CGCG	1 cut(s)	698
BstV1I	GCAGC	3 cut(s)	169, 718, 746
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	754, 995
BstYI	RGATCY	2 cut(s)	754, 995
Bsu15I	ATCGAT	1 cut(s)	541
BsuRI	GGCC	3 cut(s)	223, 240, 790
BsuTUI	ATCGAT	1 cut(s)	541
BtgI	CCRYGG	3 cut(s)	595, 696, 785
BtsCI	GGATG	3 cut(s)	280, 431, 435
BtsIMutI	CAGTG	1 cut(s)	488
Cfr13I	GGNCC	4 cut(s)	19, 67, 239, 760
Cfr42I	CCGCGG	1 cut(s)	699
ClaI	ATCGAT	1 cut(s)	541
Csp6I	GTAC	2 cut(s)	31, 985
CviAII	CATG	5 cut(s)	343, 596, 726, 856, 869
CviQI	GTAC	2 cut(s)	31, 985
DdeI	CTNAG	3 cut(s)	135, 483, 810
DpnI	GATC	8 cut(s)	213, 234, 303, 540, 756, 860, 882, 997
DpnII	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
DraI	TTTAAA	1 cut(s)	613
EaeI	YGGCCR	1 cut(s)	788
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	19, 67, 760
Eco57I	CTGAAG	2 cut(s)	563, 723
Eco88I	CYCGRG	2 cut(s)	797, 932
EcoNI	CCTNNNNNAGG	1 cut(s)	974
EcoO109I	RGGNCCY	2 cut(s)	67, 239
EcoRII	CCWGG	3 cut(s)	348, 913, 969
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	5 cut(s)	346, 599, 729, 859, 872
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	5 cut(s)	342, 595, 725, 855, 868
FauI	CCCGC	2 cut(s)	78, 691
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	826
Fnu4HI	GCNGC	3 cut(s)	158, 732, 735
FokI	GGATG	3 cut(s)	267, 418, 422
Fsp4HI	GCNGC	3 cut(s)	158, 732, 735
FspBI	CTAG	3 cut(s)	180, 765, 876
GluI	GCNGC	3 cut(s)	158, 732, 735
GsuI	CTGGAG	1 cut(s)	332
HaeIII	GGCC	3 cut(s)	223, 240, 790
Hin1II	CATG	5 cut(s)	346, 599, 729, 859, 872
HincII	GTYRAC	1 cut(s)	827
HindII	GTYRAC	1 cut(s)	827
HindIII	AAGCTT	2 cut(s)	164, 557
HinfI	GANTC	1 cut(s)	377
HphI	GGTGA	2 cut(s)	505, 641
Hpy166II	GTNNAC	3 cut(s)	31, 592, 827
Hpy188I	TCNGA	6 cut(s)	232, 376, 650, 691, 717, 863
Hpy188III	TCNNGA	7 cut(s)	284, 299, 308, 418, 581, 758, 799
Hpy8I	GTNNAC	3 cut(s)	31, 592, 827
Hpy99I	CGWCG	4 cut(s)	116, 629, 825, 828
HpyAV	CCTTC	3 cut(s)	52, 58, 164
HpyCH4III	ACNGT	3 cut(s)	35, 78, 295
HpyCH4IV	ACGT	2 cut(s)	131, 652
HpyCH4V	TGCA	5 cut(s)	157, 259, 428, 734, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 740, 749
HpyF3I	CTNAG	3 cut(s)	135, 483, 810
HpySE526I	ACGT	2 cut(s)	131, 652
Hsp92II	CATG	5 cut(s)	346, 599, 729, 859, 872
Ksp22I	TGATCA	1 cut(s)	211
KspI	CCGCGG	1 cut(s)	699
Kzo9I	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	3 cut(s)	169, 718, 746
LweI	GCATC	5 cut(s)	301, 415, 433, 437, 739
MaeI	CTAG	3 cut(s)	180, 765, 876
MaeII	ACGT	2 cut(s)	131, 652
MaeIII	GTNAC	2 cut(s)	289, 448
MalI	GATC	8 cut(s)	213, 234, 303, 540, 756, 860, 882, 997
MboI	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
MboII	GAAGA	3 cut(s)	56, 151, 569
MfeI	CAATTG	2 cut(s)	23, 407
MflI	RGATCY	2 cut(s)	754, 995
MluCI	AATT	2 cut(s)	23, 407
Mph1103I	ATGCAT	1 cut(s)	430
MseI	TTAA	2 cut(s)	612, 903
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	698
MspR9I	CCNGG	3 cut(s)	350, 915, 971
MunI	CAATTG	2 cut(s)	23, 407
MvaI	CCWGG	3 cut(s)	350, 915, 971
MvnI	CGCG	1 cut(s)	698
MwoI	GCNNNNNNNGC	3 cut(s)	163, 740, 749
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
NlaIII	CATG	5 cut(s)	346, 599, 729, 859, 872
NlaIV	GGNNCC	3 cut(s)	20, 69, 762
NsiI	ATGCAT	1 cut(s)	430
PaeR7I	CTCGAG	1 cut(s)	797
PasI	CCCWGGG	1 cut(s)	914
PceI	AGGCCT	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	831
PkrI	GCNGC	3 cut(s)	159, 733, 736
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	348, 913, 969
PspGI	CCWGG	3 cut(s)	348, 913, 969
PspN4I	GGNNCC	3 cut(s)	20, 69, 762
PspPI	GGNCC	4 cut(s)	19, 67, 239, 760
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	754, 995
PsyI	GACNNNGTC	1 cut(s)	831
RsaI	GTAC	2 cut(s)	32, 986
RsaNI	GTAC	2 cut(s)	31, 985
RseI	CAYNNNNRTG	1 cut(s)	600
SacII	CCGCGG	1 cut(s)	699
SalI	GTCGAC	1 cut(s)	825
SaqAI	TTAA	2 cut(s)	612, 903
SatI	GCNGC	3 cut(s)	158, 732, 735
Sau3AI	GATC	8 cut(s)	211, 232, 301, 538, 754, 858, 880, 995
Sau96I	GGNCC	4 cut(s)	19, 67, 239, 760
ScrFI	CCNGG	3 cut(s)	350, 915, 971
SfaNI	GCATC	5 cut(s)	301, 415, 433, 437, 739
SfcI	CTRYAG	2 cut(s)	268, 732
Sfr274I	CTCGAG	1 cut(s)	797
Sfr303I	CCGCGG	1 cut(s)	699
SgrBI	CCGCGG	1 cut(s)	699
SinI	GGWCC	3 cut(s)	19, 67, 760
SlaI	CTCGAG	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
Sse9I	AATT	2 cut(s)	23, 407
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	5 cut(s)	53, 71, 696, 698, 838
SspMI	CTAG	3 cut(s)	180, 765, 876
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	348, 913, 969
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	3 cut(s)	35, 78, 295
TaiI	ACGT	2 cut(s)	134, 655
TaqI	TCGA	3 cut(s)	541, 798, 826
TasI	AATT	2 cut(s)	23, 407
TatI	WGTACW	1 cut(s)	984
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	612, 903
Tru9I	TTAA	2 cut(s)	612, 903
TscAI	CASTG	1 cut(s)	495
TseI	GCWGC	3 cut(s)	157, 731, 734
TspDTI	ATGAA	2 cut(s)	714, 954
TspGWI	ACGGA	1 cut(s)	968
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	831
VpaK11BI	GGWCC	3 cut(s)	19, 67, 760
XagI	CCTNNNNNAGG	1 cut(s)	974
XhoI	CTCGAG	1 cut(s)	797
XmiI	GTMKAC	1 cut(s)	826
XspI	CTAG	3 cut(s)	180, 765, 876
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.