Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013894

Physical Location & Seq

Genomic Coordinates Forward (+)

14908316 .. 14913032

Gene Structure 4717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGAGGGAGGAAATGAGGGACCAATTGGTGTACCGTGAGGGGGAAGAGGAGGCGGAGAAGGACCCGCAACGGTGTCGTATTGGGTTTCCTAATAAGAGGGTTGTGGTCGTCGGTTATGCTCTTACGTCTAAGAAGACCAAGAGCTTCTTGCAGCCCAAGCTTGAAGGTTTAGCTAGAAACAAGGGGATATTATTTGTTGCCATTGATCATAACAGGCCTCTTTCGGATCAAGGCCCTTTTGACATCGTCTTGCATAAGCTTTCGGGAAGAGAGTGGCGCCAGATTCTTGAGGACTATAGGAAAACACATCCAGAAGTTACTGTTCTTGATCCTCCTGATGCGATACAACCATTACATAATCGTCAGTCCATGCTCCAGGCTGTTGCTGATATGGACTTGTCTGATTCCTATGGCAAAGTTGGTGTTCCAAGGCAATTGGTTATCAAGAGAGATGCATCATCCATCCCTGATGCTGTTACAGATAGTGGGCTGAAACTACCTCTTGTTGCTAAGCCACTGGTGAATGATGGAAGTGTAAAATCCCATCAACTATCACTTGCCTACGATCGATACTCCCTGCAAAAGCTTGAACCCCCTCTTGTTCTTCAGGAGTTTGTAAACCATGGAGGTGTTCTTTTTAAAGTGTATATCGTTGGTGAAGCTATAAAAGTGGTCAGACGTTTCTCTTTACCTGATGTCAGTAAAAGAGAGCTTTCTGAAACCGCGGGTGTATATCGTTTTCCGAGGGTTTCATGTGCTGCAGCTTCAGCAGATGATGCAGATCTGGACCCTAGCATAGCTGAACTTCCTCCACGGCCATTACTTGAGAGACTTGCTAAGGAACTTCGCCGTCGACTGGGTCTGCGGTTATTCAACTTGGACATGATCCGAGAACATGGAACTAGAGATCGGTTTTATGTCATTGACATTAACTACTTCCCTGGGTATGGCAAAATGCCCGAGTATGAGCACATATTTACGGACTTCCTATTGAGCCTGGTAGAGGCAAAGTACAAAAAGAGATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

344

Amino Acids

39.06

Weight (kDa)

8.96

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	36 - 115	4.7e-38	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	135 - 331	4.5e-94	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08170 AT4G08170
fragaria_vesca	FvH4_5g33450 FvH4_5g33450
malus_domestica	MD08G1211500.v1.1
prunus_persica	Prupe.1G543400_v2.0.a1 Prupe.1G543400_v2.0.a1
pyrus_communis	pycom08g18220
rosa_chinensis	RchiOBHm_Chr7g0232171
rosa_laevigata	RLG00000001380 RLG00000001383
rosa_roxburghii	Rroxscaffold_3G00228700
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7BG398700 Rh7CG445000
rosa_wichuraiana	Rw7G035120 Rw7G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	853
AccII	CGCG	1 cut(s)	725
AciI	CCGC	5 cut(s)	53, 65, 723, 725, 865
AclWI	GGATC	3 cut(s)	234, 323, 880
AcoI	YGGCCR	1 cut(s)	815
AcuI	CTGAAG	2 cut(s)	590, 750
AcyI	GRCGYC	1 cut(s)	277
AfaI	GTAC	2 cut(s)	32, 1013
AfiI	CCNNNNNNNGG	4 cut(s)	40, 856, 947, 1003
AgsI	TTSAA	3 cut(s)	164, 590, 874
AjnI	CCWGG	3 cut(s)	375, 940, 996
AluBI	AGCT	9 cut(s)	144, 160, 173, 259, 586, 662, 712, 764, 800
AluI	AGCT	9 cut(s)	144, 160, 173, 259, 586, 662, 712, 764, 800
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	3 cut(s)	234, 323, 880
Ama87I	CYCGRG	1 cut(s)	959
AoxI	GGCC	3 cut(s)	215, 232, 815
ApeKI	GCWGC	3 cut(s)	151, 758, 761
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	4 cut(s)	19, 61, 233, 787
AsuHPI	GGTGA	2 cut(s)	532, 668
AvaI	CYCGRG	1 cut(s)	959
AvaII	GGWCC	3 cut(s)	19, 61, 787
BanI	GGYRCC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	140
Bbv12I	GWGCWC	1 cut(s)	972
BbvI	GCAGC	3 cut(s)	163, 745, 773
BccI	CCATC	3 cut(s)	470, 521, 552
BceAI	ACGGC	2 cut(s)	830, 834
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	3 cut(s)	377, 942, 998
BclI	TGATCA	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	3 cut(s)	174, 792, 903
BfmI	CTRYAG	2 cut(s)	295, 759
BfoI	RGCGCY	1 cut(s)	280
BglII	AGATCT	2 cut(s)	781, 1022
BisI	GCNGC	3 cut(s)	152, 759, 762
BlpI	GCTNAGC	1 cut(s)	510
BlsI	GCNGC	3 cut(s)	153, 760, 763
Bme1390I	CCNGG	3 cut(s)	377, 942, 998
Bme18I	GGWCC	3 cut(s)	19, 61, 787
BmeT110I	CYCGRG	1 cut(s)	959
BmgT120I	GGNCC	4 cut(s)	19, 61, 233, 787
BmiI	GGNNCC	4 cut(s)	20, 63, 278, 789
BmrFI	CCNGG	3 cut(s)	377, 942, 998
BmrI	ACTGGG	1 cut(s)	866
BmsI	GCATC	5 cut(s)	328, 442, 460, 464, 766
BmuI	ACTGGG	1 cut(s)	866
BpiI	GAAGAC	1 cut(s)	140
BpmI	CTGGAG	1 cut(s)	359
Bpu10I	CCTNAGC	1 cut(s)	837
Bpu1102I	GCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	308, 845
Bsa29I	ATCGAT	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	780
BsaHI	GRCGYC	1 cut(s)	277
BsaJI	CCNNGG	7 cut(s)	428, 622, 723, 743, 812, 940, 941
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 856, 947, 1003
Bse1I	ACTGG	2 cut(s)	522, 861
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	3 cut(s)	377, 942, 998
BseCI	ATCGAT	1 cut(s)	568
BseDI	CCNNGG	7 cut(s)	428, 622, 723, 743, 812, 940, 941
BseGI	GGATG	3 cut(s)	307, 458, 462
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	4 cut(s)	40, 856, 947, 1003
BseNI	ACTGG	2 cut(s)	522, 861
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	163, 745, 773
Bsh1236I	CGCG	1 cut(s)	725
Bsh1285I	CGRYCG	1 cut(s)	568
BshFI	GGCC	3 cut(s)	217, 234, 817
BshNI	GGYRCC	1 cut(s)	276
BshVI	ATCGAT	1 cut(s)	568
BsiEI	CGRYCG	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	972
BsiHKCI	CYCGRG	1 cut(s)	959
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	40, 856, 947, 1003
BsmAI	GTCTC	1 cut(s)	823
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	217, 234, 817
BsoBI	CYCGRG	1 cut(s)	959
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
Bsp1720I	GCTNAGC	1 cut(s)	510
Bsp19I	CCATGG	1 cut(s)	622
BspACI	CCGC	5 cut(s)	53, 65, 723, 725, 865
BspANI	GGCC	3 cut(s)	217, 234, 817
BspDI	ATCGAT	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	4 cut(s)	20, 63, 278, 789
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	3 cut(s)	234, 323, 880
BspT107I	GGYRCC	1 cut(s)	276
BsrI	ACTGG	2 cut(s)	522, 861
BssECI	CCNNGG	7 cut(s)	428, 622, 723, 743, 812, 940, 941
BssMI	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
BssNI	GRCGYC	1 cut(s)	277
BssT1I	CCWWGG	2 cut(s)	428, 622
Bst2UI	CCWGG	3 cut(s)	377, 942, 998
Bst4CI	ACNGT	3 cut(s)	35, 72, 322
Bst6I	CTCTTC	2 cut(s)	39, 262
BstACI	GRCGYC	1 cut(s)	277
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstDEI	CTNAG	3 cut(s)	129, 510, 837
BstDSI	CCRYGG	3 cut(s)	622, 723, 812
BstENI	CCTNNNNNAGG	1 cut(s)	1001
BstF5I	GGATG	3 cut(s)	307, 458, 462
BstFNI	CGCG	1 cut(s)	725
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	8 cut(s)	208, 229, 331, 568, 784, 888, 910, 1025
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
BstMCI	CGRYCG	1 cut(s)	568
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 767, 776
BstNI	CCWGG	3 cut(s)	377, 942, 998
BstSCI	CCNGG	3 cut(s)	375, 940, 996
BstSFI	CTRYAG	2 cut(s)	295, 759
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	3 cut(s)	163, 745, 773
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	2 cut(s)	781, 1022
BstYI	RGATCY	2 cut(s)	781, 1022
Bsu15I	ATCGAT	1 cut(s)	568
BsuRI	GGCC	3 cut(s)	217, 234, 817
BsuTUI	ATCGAT	1 cut(s)	568
BtgI	CCRYGG	3 cut(s)	622, 723, 812
BtsCI	GGATG	3 cut(s)	307, 458, 462
BtsIMutI	CAGTG	1 cut(s)	515
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	19, 61, 233, 787
Cfr42I	CCGCGG	1 cut(s)	726
ClaI	ATCGAT	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	31, 1012
CviAII	CATG	5 cut(s)	370, 623, 753, 883, 896
CviQI	GTAC	2 cut(s)	31, 1012
DdeI	CTNAG	3 cut(s)	129, 510, 837
DinI	GGCGCC	1 cut(s)	278
DpnI	GATC	8 cut(s)	207, 228, 330, 567, 783, 887, 909, 1024
DpnII	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
DraI	TTTAAA	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	815
Eam1104I	CTCTTC	2 cut(s)	39, 262
EarI	CTCTTC	2 cut(s)	39, 262
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	428, 622
Eco147I	AGGCCT	1 cut(s)	217
Eco47I	GGWCC	3 cut(s)	19, 61, 787
Eco57I	CTGAAG	2 cut(s)	590, 750
Eco88I	CYCGRG	1 cut(s)	959
EcoNI	CCTNNNNNAGG	1 cut(s)	1001
EcoO109I	RGGNCCY	2 cut(s)	61, 233
EcoRII	CCWGG	3 cut(s)	375, 940, 996
EcoT14I	CCWWGG	2 cut(s)	428, 622
EcoT22I	ATGCAT	1 cut(s)	457
EgeI	GGCGCC	1 cut(s)	278
EheI	GGCGCC	1 cut(s)	278
ErhI	CCWWGG	2 cut(s)	428, 622
FaeI	CATG	5 cut(s)	373, 626, 756, 886, 899
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	5 cut(s)	369, 622, 752, 882, 895
FauI	CCCGC	2 cut(s)	72, 718
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	853
Fnu4HI	GCNGC	3 cut(s)	152, 759, 762
FokI	GGATG	3 cut(s)	294, 445, 449
Fsp4HI	GCNGC	3 cut(s)	152, 759, 762
FspBI	CTAG	3 cut(s)	174, 792, 903
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	3 cut(s)	152, 759, 762
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	217, 234, 817
HhaI	GCGC	1 cut(s)	279
Hin1I	GRCGYC	1 cut(s)	277
Hin1II	CATG	5 cut(s)	373, 626, 756, 886, 899
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	854
HindII	GTYRAC	1 cut(s)	854
HindIII	AAGCTT	3 cut(s)	158, 257, 584
HinfI	GANTC	2 cut(s)	283, 404
HphI	GGTGA	2 cut(s)	532, 668
Hpy166II	GTNNAC	3 cut(s)	31, 619, 854
Hpy188I	TCNGA	6 cut(s)	226, 403, 677, 718, 744, 890
Hpy188III	TCNNGA	8 cut(s)	264, 287, 311, 326, 335, 445, 608, 785
Hpy8I	GTNNAC	3 cut(s)	31, 619, 854
Hpy99I	CGWCG	2 cut(s)	113, 855
HpyAV	CCTTC	2 cut(s)	52, 158
HpyCH4III	ACNGT	3 cut(s)	35, 72, 322
HpyCH4IV	ACGT	2 cut(s)	125, 679
HpyCH4V	TGCA	6 cut(s)	151, 253, 455, 580, 761, 779
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 767, 776
HpyF3I	CTNAG	3 cut(s)	129, 510, 837
HpySE526I	ACGT	2 cut(s)	125, 679
Hsp92I	GRCGYC	1 cut(s)	277
Hsp92II	CATG	5 cut(s)	373, 626, 756, 886, 899
HspAI	GCGC	1 cut(s)	277
KasI	GGCGCC	1 cut(s)	276
Ksp22I	TGATCA	1 cut(s)	205
KspI	CCGCGG	1 cut(s)	726
Kzo9I	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
LmnI	GCTCC	1 cut(s)	378
Lsp1109I	GCAGC	3 cut(s)	163, 745, 773
LweI	GCATC	5 cut(s)	328, 442, 460, 464, 766
MaeI	CTAG	3 cut(s)	174, 792, 903
MaeII	ACGT	2 cut(s)	125, 679
MaeIII	GTNAC	2 cut(s)	316, 475
MalI	GATC	8 cut(s)	207, 228, 330, 567, 783, 887, 909, 1024
MboI	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
MboII	GAAGA	4 cut(s)	56, 145, 279, 596
MfeI	CAATTG	2 cut(s)	23, 434
MflI	RGATCY	2 cut(s)	781, 1022
MhlI	GDGCHC	1 cut(s)	972
MluCI	AATT	2 cut(s)	23, 434
Mly113I	GGCGCC	1 cut(s)	277
Mph1103I	ATGCAT	1 cut(s)	457
MseI	TTAA	2 cut(s)	639, 930
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	725
MspR9I	CCNGG	3 cut(s)	377, 942, 998
MunI	CAATTG	2 cut(s)	23, 434
MvaI	CCWGG	3 cut(s)	377, 942, 998
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	3 cut(s)	157, 767, 776
NarI	GGCGCC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	622
NdeII	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
NlaIII	CATG	5 cut(s)	373, 626, 756, 886, 899
NlaIV	GGNNCC	4 cut(s)	20, 63, 278, 789
NsiI	ATGCAT	1 cut(s)	457
PasI	CCCWGGG	1 cut(s)	941
PceI	AGGCCT	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	283, 404
PflFI	GACNNNGTC	2 cut(s)	245, 858
PkrI	GCNGC	3 cut(s)	153, 760, 763
Ple19I	CGATCG	1 cut(s)	568
PluTI	GGCGCC	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	61
Psp5II	RGGWCCY	1 cut(s)	61
Psp6I	CCWGG	3 cut(s)	375, 940, 996
PspGI	CCWGG	3 cut(s)	375, 940, 996
PspN4I	GGNNCC	4 cut(s)	20, 63, 278, 789
PspPI	GGNCC	4 cut(s)	19, 61, 233, 787
PspPPI	RGGWCCY	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	781, 1022
PsyI	GACNNNGTC	2 cut(s)	245, 858
PvuI	CGATCG	1 cut(s)	568
RsaI	GTAC	2 cut(s)	32, 1013
RsaNI	GTAC	2 cut(s)	31, 1012
RseI	CAYNNNNRTG	1 cut(s)	627
SacII	CCGCGG	1 cut(s)	726
SalI	GTCGAC	1 cut(s)	852
SaqAI	TTAA	2 cut(s)	639, 930
SatI	GCNGC	3 cut(s)	152, 759, 762
Sau3AI	GATC	8 cut(s)	205, 226, 328, 565, 781, 885, 907, 1022
Sau96I	GGNCC	4 cut(s)	19, 61, 233, 787
ScrFI	CCNGG	3 cut(s)	377, 942, 998
SduI	GDGCHC	1 cut(s)	972
SfaNI	GCATC	5 cut(s)	328, 442, 460, 464, 766
SfcI	CTRYAG	2 cut(s)	295, 759
SfoI	GGCGCC	1 cut(s)	278
Sfr303I	CCGCGG	1 cut(s)	726
SgrBI	CCGCGG	1 cut(s)	726
SinI	GGWCC	3 cut(s)	19, 61, 787
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	287, 824
SmoI	CTYRAG	2 cut(s)	287, 824
Sse9I	AATT	2 cut(s)	23, 434
SseBI	AGGCCT	1 cut(s)	217
SsiI	CCGC	5 cut(s)	53, 65, 723, 725, 865
SspDI	GGCGCC	1 cut(s)	276
SspMI	CTAG	3 cut(s)	174, 792, 903
StuI	AGGCCT	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	375, 940, 996
StyI	CCWWGG	2 cut(s)	428, 622
TaaI	ACNGT	3 cut(s)	35, 72, 322
TaiI	ACGT	2 cut(s)	128, 682
TaqI	TCGA	2 cut(s)	568, 853
TasI	AATT	2 cut(s)	23, 434
TatI	WGTACW	1 cut(s)	1011
TfiI	GAWTC	2 cut(s)	283, 404
Tru1I	TTAA	2 cut(s)	639, 930
Tru9I	TTAA	2 cut(s)	639, 930
TscAI	CASTG	1 cut(s)	522
TseI	GCWGC	3 cut(s)	151, 758, 761
TspDTI	ATGAA	1 cut(s)	741
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	1 cut(s)	522
Tth111I	GACNNNGTC	2 cut(s)	245, 858
VpaK11BI	GGWCC	3 cut(s)	19, 61, 787
XagI	CCTNNNNNAGG	1 cut(s)	1001
XmiI	GTMKAC	1 cut(s)	853
XspI	CTAG	3 cut(s)	174, 792, 903
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.