Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013894

Physical Location & Seq

Genomic Coordinates Reverse (-)

52493802 .. 52498509

Gene Structure 4708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G035220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGAGGGAGGAAATGAGGGACCAATTGGTGTGCCGTGAGGGGGAAGAGGAGGCGGAGAAGGAGAAGGACCCGCAACGCTGTCGTATTGGGTTTCCTCATAAGAGGCTTGTCGTCGTGGGTTATGCTCTTACGTCTAAGAAGACCAAGAGCTTCTTGCAGCCCAAGCTTGAAGGTTTAGCTAGGAACAAGGGGATATTATTTGTTGCTATTGATCATAACAGGTCTCTTTCGGATCAAGGCCCTTTTGACATTGTGTTGCATAAGCTTTCGGGAAGAGACTGGCGCCAGATTCTTGAGGACTATAGGAAAACACATCCAGAAGTTACTGTTCTTGATCCTCCTGATGCGATACAACCTTTACATAATCGTCAGTCCATGCTTCAGGCTGTTGCTGATATGGACTTGTCTGATTCCTATGGCAAAGTTGGTGTTCCAAGACAATTGGTTATCAAGAGAGATGCATCATCCATCCCTGATGCTGTTACAGATAGTGGGCTGAAACTACCTCTTGGTATTGTAAAATCCCATCAACTATCACTTGCCTATGATCGATACTCCCTCCAAAAGCTTGAACCCCCTCTTGTTCTTCAGGAGTTTGTAAACCATGGAGGTGTTCTTTTTAAAGTATATATCGTTGGTGAAGCTATAAAAGTGGTCAGACGTTTCTCTTTACCTGATGTCAGTAAAAGGGAGCTTTCTGAAACCGCAGGTGTATATCGTTTTCCGAGGGTTTCATGTGCTGCAGCTTCAGCAGATGATGCAGATCTGGACCCTAGCATAGCTGAACTTCCTCCACGGCCATTACTCGAGAGACTTGCTAAGGAACTTCGCCGTCGACTGGGTCTGCGGTTGTTCAACTTGGACATGATCCGAGAACATGGAACTAGAGATCGGTTTTATGTCATTGACATTAACTACTTCCCTGGGTATGGGAAAATGCCCGAGTATGAGCACATATTTACGGACTTCCTATTGAGCCTGGTGGAGGCAAAGTACAAAAAGAGATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

337

Amino Acids

38.46

Weight (kDa)

8.91

Isoelectric Point (pI)

44.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	38 - 117	4.7e-37	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	137 - 325	6e-84	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08170 AT4G08170
fragaria_vesca	FvH4_5g33450 FvH4_5g33450
malus_domestica	MD08G1211500.v1.1
prunus_persica	Prupe.1G543400_v2.0.a1 Prupe.1G543400_v2.0.a1
pyrus_communis	pycom08g18220
rosa_chinensis	RchiOBHm_Chr7g0232171
rosa_laevigata	RLG00000001380 RLG00000001383
rosa_roxburghii	Rroxscaffold_3G00228700
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7BG398700 Rh7CG445000
rosa_wichuraiana	Rw7G035120 Rw7G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	698
Acc36I	ACCTGC	1 cut(s)	698
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	835
AciI	CCGC	4 cut(s)	53, 71, 705, 847
AclWI	GGATC	3 cut(s)	240, 329, 862
AcoI	YGGCCR	1 cut(s)	797
AcuI	CTGAAG	3 cut(s)	365, 572, 732
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	1 cut(s)	995
AfiI	CCNNNNNNNGG	4 cut(s)	40, 838, 929, 985
AgsI	TTSAA	3 cut(s)	170, 572, 856
AjnI	CCWGG	2 cut(s)	922, 978
AluBI	AGCT	9 cut(s)	150, 166, 179, 265, 568, 644, 694, 746, 782
AluI	AGCT	9 cut(s)	150, 166, 179, 265, 568, 644, 694, 746, 782
Alw21I	GWGCWC	1 cut(s)	954
Alw26I	GTCTC	3 cut(s)	228, 270, 805
AlwI	GGATC	3 cut(s)	240, 329, 862
Ama87I	CYCGRG	2 cut(s)	806, 941
AoxI	GGCC	2 cut(s)	238, 797
ApeKI	GCWGC	3 cut(s)	157, 740, 743
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	4 cut(s)	19, 67, 239, 769
AsuHPI	GGTGA	1 cut(s)	650
AvaI	CYCGRG	2 cut(s)	806, 941
AvaII	GGWCC	3 cut(s)	19, 67, 769
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	954
BbvI	GCAGC	3 cut(s)	169, 727, 755
BccI	CCATC	2 cut(s)	476, 534
BceAI	ACGGC	3 cut(s)	18, 812, 816
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 797, 831
BciT130I	CCWGG	2 cut(s)	924, 980
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	228, 270, 805
BfaI	CTAG	3 cut(s)	180, 774, 885
BfmI	CTRYAG	2 cut(s)	301, 741
BfoI	RGCGCY	1 cut(s)	286
BfuAI	ACCTGC	1 cut(s)	698
BglII	AGATCT	2 cut(s)	763, 1004
BisI	GCNGC	3 cut(s)	158, 741, 744
BlsI	GCNGC	3 cut(s)	159, 742, 745
Bme1390I	CCNGG	2 cut(s)	924, 980
Bme18I	GGWCC	3 cut(s)	19, 67, 769
BmeT110I	CYCGRG	2 cut(s)	806, 941
BmgT120I	GGNCC	4 cut(s)	19, 67, 239, 769
BmiI	GGNNCC	4 cut(s)	20, 69, 284, 771
BmrFI	CCNGG	2 cut(s)	924, 980
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	5 cut(s)	334, 448, 466, 470, 748
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	819
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	762
BsaHI	GRCGYC	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	5 cut(s)	604, 725, 794, 922, 923
BsaXI	ACNNNNNCTCC	2 cut(s)	977, 1007
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 838, 929, 985
Bse1I	ACTGG	2 cut(s)	284, 843
Bse8I	GATNNNNATC	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	924, 980
BseCI	ATCGAT	1 cut(s)	550
BseDI	CCNNGG	5 cut(s)	604, 725, 794, 922, 923
BseGI	GGATG	3 cut(s)	313, 464, 468
BseJI	GATNNNNATC	1 cut(s)	762
BseLI	CCNNNNNNNGG	4 cut(s)	40, 838, 929, 985
BseNI	ACTGG	2 cut(s)	284, 843
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	169, 727, 755
BshFI	GGCC	2 cut(s)	240, 799
BshNI	GGYRCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	954
BsiHKCI	CYCGRG	2 cut(s)	806, 941
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	40, 838, 929, 985
BsmAI	GTCTC	3 cut(s)	228, 270, 805
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	2 cut(s)	240, 799
Bso31I	GGTCTC	1 cut(s)	228
BsoBI	CYCGRG	2 cut(s)	806, 941
Bsp1286I	GDGCHC	1 cut(s)	954
Bsp143I	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
Bsp19I	CCATGG	1 cut(s)	604
BspACI	CCGC	4 cut(s)	53, 71, 705, 847
BspANI	GGCC	2 cut(s)	240, 799
BspDI	ATCGAT	1 cut(s)	550
BspLI	GGNNCC	4 cut(s)	20, 69, 284, 771
BspMAI	CTGCAG	1 cut(s)	745
BspMI	ACCTGC	1 cut(s)	698
BspPI	GGATC	3 cut(s)	240, 329, 862
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	284, 843
BssECI	CCNNGG	5 cut(s)	604, 725, 794, 922, 923
BssMI	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	604
Bst2UI	CCWGG	2 cut(s)	924, 980
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	39, 268
BstACI	GRCGYC	1 cut(s)	283
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstDEI	CTNAG	2 cut(s)	135, 819
BstDSI	CCRYGG	2 cut(s)	604, 794
BstENI	CCTNNNNNAGG	1 cut(s)	983
BstF5I	GGATG	3 cut(s)	313, 464, 468
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	8 cut(s)	214, 235, 337, 550, 766, 870, 892, 1007
BstMAI	GTCTC	3 cut(s)	228, 270, 805
BstMBI	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 749, 758
BstNI	CCWGG	2 cut(s)	924, 980
BstSCI	CCNGG	2 cut(s)	922, 978
BstSFI	CTRYAG	2 cut(s)	301, 741
BstV1I	GCAGC	3 cut(s)	169, 727, 755
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	763, 1004
BstYI	RGATCY	2 cut(s)	763, 1004
Bsu15I	ATCGAT	1 cut(s)	550
BsuRI	GGCC	2 cut(s)	240, 799
BsuTUI	ATCGAT	1 cut(s)	550
BtgI	CCRYGG	2 cut(s)	604, 794
BtsCI	GGATG	3 cut(s)	313, 464, 468
BveI	ACCTGC	1 cut(s)	698
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	4 cut(s)	19, 67, 239, 769
ClaI	ATCGAT	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	994
CviAII	CATG	5 cut(s)	376, 605, 735, 865, 878
CviQI	GTAC	1 cut(s)	994
DdeI	CTNAG	2 cut(s)	135, 819
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	8 cut(s)	213, 234, 336, 549, 765, 869, 891, 1006
DpnII	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
DraI	TTTAAA	1 cut(s)	622
EaeI	YGGCCR	1 cut(s)	797
Eam1104I	CTCTTC	2 cut(s)	39, 268
EarI	CTCTTC	2 cut(s)	39, 268
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	604
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	3 cut(s)	19, 67, 769
Eco57I	CTGAAG	3 cut(s)	365, 572, 732
Eco88I	CYCGRG	2 cut(s)	806, 941
EcoNI	CCTNNNNNAGG	1 cut(s)	983
EcoO109I	RGGNCCY	2 cut(s)	67, 239
EcoRII	CCWGG	2 cut(s)	922, 978
EcoT14I	CCWWGG	1 cut(s)	604
EcoT22I	ATGCAT	1 cut(s)	463
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	604
FaeI	CATG	5 cut(s)	379, 608, 738, 868, 881
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	5 cut(s)	375, 604, 734, 864, 877
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	835
Fnu4HI	GCNGC	3 cut(s)	158, 741, 744
FokI	GGATG	3 cut(s)	300, 451, 455
Fsp4HI	GCNGC	3 cut(s)	158, 741, 744
FspBI	CTAG	3 cut(s)	180, 774, 885
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	158, 741, 744
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	240, 799
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	5 cut(s)	379, 608, 738, 868, 881
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	836
HindII	GTYRAC	1 cut(s)	836
HindIII	AAGCTT	3 cut(s)	164, 263, 566
HinfI	GANTC	2 cut(s)	289, 410
HphI	GGTGA	1 cut(s)	650
Hpy166II	GTNNAC	2 cut(s)	601, 836
Hpy188I	TCNGA	6 cut(s)	232, 409, 659, 700, 726, 872
Hpy188III	TCNNGA	9 cut(s)	270, 293, 317, 332, 341, 451, 590, 767, 808
Hpy8I	GTNNAC	2 cut(s)	601, 836
Hpy99I	CGWCG	2 cut(s)	116, 837
HpyAV	CCTTC	3 cut(s)	52, 58, 164
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4IV	ACGT	2 cut(s)	131, 661
HpyCH4V	TGCA	5 cut(s)	157, 259, 461, 743, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 749, 758
HpyF3I	CTNAG	2 cut(s)	135, 819
HpySE526I	ACGT	2 cut(s)	131, 661
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	5 cut(s)	379, 608, 738, 868, 881
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	3 cut(s)	169, 727, 755
LweI	GCATC	5 cut(s)	334, 448, 466, 470, 748
MaeI	CTAG	3 cut(s)	180, 774, 885
MaeII	ACGT	2 cut(s)	131, 661
MaeIII	GTNAC	2 cut(s)	322, 481
MalI	GATC	8 cut(s)	213, 234, 336, 549, 765, 869, 891, 1006
MboI	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
MboII	GAAGA	4 cut(s)	56, 151, 285, 578
MfeI	CAATTG	2 cut(s)	23, 440
MflI	RGATCY	2 cut(s)	763, 1004
MhlI	GDGCHC	1 cut(s)	954
MluCI	AATT	2 cut(s)	23, 440
Mly113I	GGCGCC	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	2 cut(s)	621, 912
MslI	CAYNNNNRTG	1 cut(s)	609
MspR9I	CCNGG	2 cut(s)	924, 980
MunI	CAATTG	2 cut(s)	23, 440
MvaI	CCWGG	2 cut(s)	924, 980
MwoI	GCNNNNNNNGC	3 cut(s)	163, 749, 758
NarI	GGCGCC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	604
NdeII	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
NlaIII	CATG	5 cut(s)	379, 608, 738, 868, 881
NlaIV	GGNNCC	4 cut(s)	20, 69, 284, 771
NsiI	ATGCAT	1 cut(s)	463
PaeR7I	CTCGAG	1 cut(s)	806
PaqCI	CACCTGC	1 cut(s)	698
PasI	CCCWGGG	1 cut(s)	923
PfeI	GAWTC	2 cut(s)	289, 410
PflFI	GACNNNGTC	1 cut(s)	840
PkrI	GCNGC	3 cut(s)	159, 742, 745
PluTI	GGCGCC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	922, 978
PspGI	CCWGG	2 cut(s)	922, 978
PspN4I	GGNNCC	4 cut(s)	20, 69, 284, 771
PspPI	GGNCC	4 cut(s)	19, 67, 239, 769
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	2 cut(s)	763, 1004
PsyI	GACNNNGTC	1 cut(s)	840
RsaI	GTAC	1 cut(s)	995
RsaNI	GTAC	1 cut(s)	994
RseI	CAYNNNNRTG	1 cut(s)	609
SalI	GTCGAC	1 cut(s)	834
SaqAI	TTAA	2 cut(s)	621, 912
SatI	GCNGC	3 cut(s)	158, 741, 744
Sau3AI	GATC	8 cut(s)	211, 232, 334, 547, 763, 867, 889, 1004
Sau96I	GGNCC	4 cut(s)	19, 67, 239, 769
ScrFI	CCNGG	2 cut(s)	924, 980
SduI	GDGCHC	1 cut(s)	954
SfaNI	GCATC	5 cut(s)	334, 448, 466, 470, 748
SfcI	CTRYAG	2 cut(s)	301, 741
SfoI	GGCGCC	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	806
SinI	GGWCC	3 cut(s)	19, 67, 769
SlaI	CTCGAG	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	293, 806
SmoI	CTYRAG	2 cut(s)	293, 806
Sse9I	AATT	2 cut(s)	23, 440
SsiI	CCGC	4 cut(s)	53, 71, 705, 847
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	3 cut(s)	180, 774, 885
StyD4I	CCNGG	2 cut(s)	922, 978
StyI	CCWWGG	1 cut(s)	604
TaaI	ACNGT	1 cut(s)	328
TaiI	ACGT	2 cut(s)	134, 664
TaqI	TCGA	3 cut(s)	550, 807, 835
TasI	AATT	2 cut(s)	23, 440
TatI	WGTACW	1 cut(s)	993
TfiI	GAWTC	2 cut(s)	289, 410
Tru1I	TTAA	2 cut(s)	621, 912
Tru9I	TTAA	2 cut(s)	621, 912
TseI	GCWGC	3 cut(s)	157, 740, 743
TspDTI	ATGAA	1 cut(s)	723
TspGWI	ACGGA	1 cut(s)	977
Tth111I	GACNNNGTC	1 cut(s)	840
VpaK11BI	GGWCC	3 cut(s)	19, 67, 769
XagI	CCTNNNNNAGG	1 cut(s)	983
XhoI	CTCGAG	1 cut(s)	806
XmiI	GTMKAC	1 cut(s)	835
XspI	CTAG	3 cut(s)	180, 774, 885
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.