Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013894

Physical Location & Seq

Genomic Coordinates Forward (+)

13118588 .. 13123939

Gene Structure 5352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAGGGAGGAAATGAGGGAGCAATTGGTGTACCGTGAGGGGGAAGAGGAGGCGGAGAAGGAGAAGGACCCGCAACGGTGTCGTATTGGGTTTCCTAATAAGAGCGTTGTGGTCGTCGGTTATGCTCTTACGTCCAAGAAGACCAAGAGCTTCTTGCAGCCTAAGCTTGAAGGTTTAGCTAGAAACAAGGGGATATTATTTGTTGCTATTGATCATAACAGGTCTCTTTCGGATCAAGGCCCTTTTGACATTGTGTTGCATAAGCTTTCGGGAAGAGAGTGGCGCCAGATTCTTGAGGACTATAGGAAAACACATCCAGAAGTCACTGTTCTTGATCCTCCTGATGCGATACAACCTTTACATAATCGTCAGTCCATGCTCCAGGCTGTTGCTGATATGGACTTGTCTGATTCCTATGGCAAAGTTGGTGTTCCAAGACAATTGGTTATCAAGAGAGATGCATCATCCATCCCTGATGCTGTTACAGATAGTGGGCTGAAACTACCTCTTGTTGCTAAGCCACTGGTGAATGATGGAAGTGTAAAATCCCATCAACTATCACTTGCCTATGATCGATACTCCCTCCAAAAGCTTGAACCCCCTCTTGTTCTTCAGGAGTTTGTAAACCATGGAGGTGTTCTTTTTAAAGTATATATCGTTGGTGAAGCTATAAAAGTGGTCAGACGTTTCTCTTTACCTGATGCTGTGGAATCTGTGTATGCTGATCAGGGATCTAATATGAGTAATTCTGTTTTGCCTGCAGAACTTCCTCCACGGCCATTACTTGAGAGACTTGCTAAGGAACTTCGTCGTCGACTGGGTCTGCGGTTATTCAACTTGGACATGATCCGAGAACATGGAACTAGAGATCGGTTTTATGTCATTGACATTAACTACTTCCCTGGGTATGGGAAAATGCCCGAGTATGAGCACATATTTACAGACTTCCTATTGAGCCTGGTGGAGGCAAAGTACAAAAAGAGATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

330

Amino Acids

37.63

Weight (kDa)

8.89

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	38 - 117	1.3e-37	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	137 - 318	3e-76	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08170 AT4G08170
fragaria_vesca	FvH4_5g33450 FvH4_5g33450
malus_domestica	MD08G1211500.v1.1
prunus_persica	Prupe.1G543400_v2.0.a1 Prupe.1G543400_v2.0.a1
pyrus_communis	pycom08g18220
rosa_chinensis	RchiOBHm_Chr7g0232171
rosa_laevigata	RLG00000001380 RLG00000001383
rosa_roxburghii	Rroxscaffold_3G00228700
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7BG398700 Rh7CG445000
rosa_wichuraiana	Rw7G035120 Rw7G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	814
AciI	CCGC	3 cut(s)	53, 71, 826
AclWI	GGATC	4 cut(s)	240, 329, 739, 841
AcoI	YGGCCR	1 cut(s)	776
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	283
AfaI	GTAC	2 cut(s)	32, 974
AfiI	CCNNNNNNNGG	3 cut(s)	40, 908, 964
AgsI	TTSAA	3 cut(s)	170, 596, 835
AjnI	CCWGG	3 cut(s)	381, 901, 957
AluBI	AGCT	6 cut(s)	150, 166, 179, 265, 592, 668
AluI	AGCT	6 cut(s)	150, 166, 179, 265, 592, 668
Alw21I	GWGCWC	1 cut(s)	933
Alw26I	GTCTC	2 cut(s)	228, 784
AlwI	GGATC	4 cut(s)	240, 329, 739, 841
Ama87I	CYCGRG	1 cut(s)	920
AoxI	GGCC	2 cut(s)	238, 776
ApeKI	GCWGC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	67, 239
AsuHPI	GGTGA	2 cut(s)	538, 674
AvaI	CYCGRG	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	67
BanI	GGYRCC	1 cut(s)	282
BbsI	GAAGAC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	476, 527, 558
BceAI	ACGGC	1 cut(s)	791
BcgI	CGANNNNNNTGC	2 cut(s)	62, 96
BciT130I	CCWGG	3 cut(s)	383, 903, 959
BclI	TGATCA	2 cut(s)	211, 724
BcoDI	GTCTC	2 cut(s)	228, 784
BfaI	CTAG	2 cut(s)	180, 864
BfmI	CTRYAG	2 cut(s)	301, 759
BfoI	RGCGCY	1 cut(s)	286
BglII	AGATCT	1 cut(s)	983
BisI	GCNGC	1 cut(s)	158
BlpI	GCTNAGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	159
Bme1390I	CCNGG	3 cut(s)	383, 903, 959
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	920
BmgT120I	GGNCC	2 cut(s)	67, 239
BmiI	GGNNCC	2 cut(s)	69, 284
BmrFI	CCNGG	3 cut(s)	383, 903, 959
BmrI	ACTGGG	1 cut(s)	827
BmsI	GCATC	5 cut(s)	334, 448, 466, 470, 691
BmuI	ACTGGG	1 cut(s)	827
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	2 cut(s)	162, 798
Bpu1102I	GCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	314, 806
Bsa29I	ATCGAT	1 cut(s)	574
BsaHI	GRCGYC	1 cut(s)	283
BsaI	GGTCTC	1 cut(s)	228
BsaJI	CCNNGG	4 cut(s)	628, 773, 901, 902
BsaXI	ACNNNNNCTCC	2 cut(s)	956, 986
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 908, 964
Bse1I	ACTGG	2 cut(s)	528, 822
BseBI	CCWGG	3 cut(s)	383, 903, 959
BseCI	ATCGAT	1 cut(s)	574
BseDI	CCNNGG	4 cut(s)	628, 773, 901, 902
BseGI	GGATG	3 cut(s)	313, 464, 468
BseLI	CCNNNNNNNGG	3 cut(s)	40, 908, 964
BseNI	ACTGG	2 cut(s)	528, 822
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	169
BshFI	GGCC	2 cut(s)	240, 778
BshNI	GGYRCC	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	933
BsiHKCI	CYCGRG	1 cut(s)	920
BslI	CCNNNNNNNGG	3 cut(s)	40, 908, 964
BsmAI	GTCTC	2 cut(s)	228, 784
BsnI	GGCC	2 cut(s)	240, 778
Bso31I	GGTCTC	1 cut(s)	228
BsoBI	CYCGRG	1 cut(s)	920
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp143I	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
Bsp1720I	GCTNAGC	1 cut(s)	516
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	3 cut(s)	53, 71, 826
BspANI	GGCC	2 cut(s)	240, 778
BspDI	ATCGAT	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	69, 284
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	4 cut(s)	240, 329, 739, 841
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	528, 822
BssECI	CCNNGG	4 cut(s)	628, 773, 901, 902
BssMI	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	3 cut(s)	383, 903, 959
Bst4CI	ACNGT	3 cut(s)	35, 78, 328
Bst6I	CTCTTC	2 cut(s)	39, 268
BstACI	GRCGYC	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	3 cut(s)	162, 516, 798
BstDSI	CCRYGG	2 cut(s)	628, 773
BstENI	CCTNNNNNAGG	1 cut(s)	962
BstF5I	GGATG	3 cut(s)	313, 464, 468
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	9 cut(s)	214, 235, 337, 574, 727, 734, 849, 871, 986
BstMAI	GTCTC	2 cut(s)	228, 784
BstMBI	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
BstMWI	GCNNNNNNNGC	1 cut(s)	163
BstNI	CCWGG	3 cut(s)	383, 903, 959
BstSCI	CCNGG	3 cut(s)	381, 901, 957
BstSFI	CTRYAG	2 cut(s)	301, 759
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	2 cut(s)	731, 983
BstYI	RGATCY	2 cut(s)	731, 983
Bsu15I	ATCGAT	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	240, 778
BsuTUI	ATCGAT	1 cut(s)	574
BtgI	CCRYGG	2 cut(s)	628, 773
BtsCI	GGATG	3 cut(s)	313, 464, 468
BtsIMutI	CAGTG	2 cut(s)	324, 521
Cac8I	GCNNGC	1 cut(s)	759
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	67, 239
ClaI	ATCGAT	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	31, 973
CviAII	CATG	4 cut(s)	376, 629, 844, 857
CviQI	GTAC	2 cut(s)	31, 973
DdeI	CTNAG	3 cut(s)	162, 516, 798
DinI	GGCGCC	1 cut(s)	284
DpnI	GATC	9 cut(s)	213, 234, 336, 573, 726, 733, 848, 870, 985
DpnII	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
DraI	TTTAAA	1 cut(s)	646
EaeI	YGGCCR	1 cut(s)	776
Eam1104I	CTCTTC	2 cut(s)	39, 268
EarI	CTCTTC	2 cut(s)	39, 268
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	628
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	596
Eco88I	CYCGRG	1 cut(s)	920
EcoNI	CCTNNNNNAGG	1 cut(s)	962
EcoO109I	RGGNCCY	2 cut(s)	67, 239
EcoRII	CCWGG	3 cut(s)	381, 901, 957
EcoT14I	CCWWGG	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	463
EgeI	GGCGCC	1 cut(s)	284
EheI	GGCGCC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	4 cut(s)	379, 632, 847, 860
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	4 cut(s)	375, 628, 843, 856
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	2 cut(s)	211, 724
FblI	GTMKAC	1 cut(s)	814
Fnu4HI	GCNGC	1 cut(s)	158
FokI	GGATG	3 cut(s)	300, 451, 455
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	2 cut(s)	180, 864
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	286
HaeIII	GGCC	2 cut(s)	240, 778
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	379, 632, 847, 860
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	815
HindII	GTYRAC	1 cut(s)	815
HindIII	AAGCTT	3 cut(s)	164, 263, 590
HinfI	GANTC	3 cut(s)	289, 410, 710
HphI	GGTGA	2 cut(s)	538, 674
Hpy166II	GTNNAC	3 cut(s)	31, 625, 815
Hpy188I	TCNGA	4 cut(s)	232, 409, 683, 851
Hpy188III	TCNNGA	7 cut(s)	270, 293, 317, 332, 341, 451, 614
Hpy8I	GTNNAC	3 cut(s)	31, 625, 815
Hpy99I	CGWCG	3 cut(s)	119, 813, 816
HpyAV	CCTTC	3 cut(s)	52, 58, 164
HpyCH4III	ACNGT	3 cut(s)	35, 78, 328
HpyCH4IV	ACGT	2 cut(s)	131, 685
HpyCH4V	TGCA	4 cut(s)	157, 259, 461, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	163
HpyF3I	CTNAG	3 cut(s)	162, 516, 798
HpySE526I	ACGT	2 cut(s)	131, 685
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	4 cut(s)	379, 632, 847, 860
HspAI	GCGC	1 cut(s)	283
KasI	GGCGCC	1 cut(s)	282
Ksp22I	TGATCA	2 cut(s)	211, 724
Kzo9I	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
LmnI	GCTCC	2 cut(s)	19, 384
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	5 cut(s)	334, 448, 466, 470, 691
MaeI	CTAG	2 cut(s)	180, 864
MaeII	ACGT	2 cut(s)	131, 685
MaeIII	GTNAC	2 cut(s)	322, 481
MalI	GATC	9 cut(s)	213, 234, 336, 573, 726, 733, 848, 870, 985
MboI	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
MboII	GAAGA	4 cut(s)	56, 151, 285, 602
MfeI	CAATTG	2 cut(s)	23, 440
MflI	RGATCY	2 cut(s)	731, 983
MhlI	GDGCHC	1 cut(s)	933
MluCI	AATT	3 cut(s)	23, 440, 745
Mly113I	GGCGCC	1 cut(s)	283
Mph1103I	ATGCAT	1 cut(s)	463
MseI	TTAA	2 cut(s)	645, 891
MslI	CAYNNNNRTG	1 cut(s)	633
MspR9I	CCNGG	3 cut(s)	383, 903, 959
MunI	CAATTG	2 cut(s)	23, 440
MvaI	CCWGG	3 cut(s)	383, 903, 959
MwoI	GCNNNNNNNGC	1 cut(s)	163
NarI	GGCGCC	1 cut(s)	283
NcoI	CCATGG	1 cut(s)	628
NdeII	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
NlaIII	CATG	4 cut(s)	379, 632, 847, 860
NlaIV	GGNNCC	2 cut(s)	69, 284
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	1 cut(s)	463
PasI	CCCWGGG	1 cut(s)	902
PfeI	GAWTC	3 cut(s)	289, 410, 710
PflFI	GACNNNGTC	1 cut(s)	819
PkrI	GCNGC	1 cut(s)	159
PluTI	GGCGCC	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	67
Psp5II	RGGWCCY	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	381, 901, 957
PspGI	CCWGG	3 cut(s)	381, 901, 957
PspN4I	GGNNCC	2 cut(s)	69, 284
PspPI	GGNCC	2 cut(s)	67, 239
PspPPI	RGGWCCY	1 cut(s)	67
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	731, 983
PsyI	GACNNNGTC	1 cut(s)	819
RsaI	GTAC	2 cut(s)	32, 974
RsaNI	GTAC	2 cut(s)	31, 973
RseI	CAYNNNNRTG	1 cut(s)	633
SalI	GTCGAC	1 cut(s)	813
SaqAI	TTAA	2 cut(s)	645, 891
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	9 cut(s)	211, 232, 334, 571, 724, 731, 846, 868, 983
Sau96I	GGNCC	2 cut(s)	67, 239
ScrFI	CCNGG	3 cut(s)	383, 903, 959
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	5 cut(s)	334, 448, 466, 470, 691
SfcI	CTRYAG	2 cut(s)	301, 759
SfoI	GGCGCC	1 cut(s)	284
SinI	GGWCC	1 cut(s)	67
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	2 cut(s)	293, 785
SmoI	CTYRAG	2 cut(s)	293, 785
Sse9I	AATT	3 cut(s)	23, 440, 745
SsiI	CCGC	3 cut(s)	53, 71, 826
SspDI	GGCGCC	1 cut(s)	282
SspMI	CTAG	2 cut(s)	180, 864
StyD4I	CCNGG	3 cut(s)	381, 901, 957
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	3 cut(s)	35, 78, 328
TaiI	ACGT	2 cut(s)	134, 688
TaqI	TCGA	2 cut(s)	574, 814
TasI	AATT	3 cut(s)	23, 440, 745
TatI	WGTACW	1 cut(s)	972
TfiI	GAWTC	3 cut(s)	289, 410, 710
Tru1I	TTAA	2 cut(s)	645, 891
Tru9I	TTAA	2 cut(s)	645, 891
TscAI	CASTG	2 cut(s)	331, 528
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	322
TspRI	CASTG	2 cut(s)	331, 528
Tth111I	GACNNNGTC	1 cut(s)	819
VpaK11BI	GGWCC	1 cut(s)	67
XagI	CCTNNNNNAGG	1 cut(s)	962
XmiI	GTMKAC	1 cut(s)	814
XspI	CTAG	2 cut(s)	180, 864
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.