Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013894

Physical Location & Seq

Genomic Coordinates Reverse (-)

58425017 .. 58429733

Gene Structure 4717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG445000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAGGGAGGAAATGAGGGACCAATTGGTGTACCGTGAGGGGGAAGAGGAGGCGGAGAAGGAGAAGGAGAAGGACCCGCAACGCTGTCGTATTGGGTTTCCTCATAAGAGGCTTGTCGTCGTGGGTTATGCTCTTACGTCTAAGAAGACCAAGAGCTTCTTGCAGCCCAAGCTTGAAGGTTTAGCTAGGAACAAGGGGATATTATTTGTTGCTATTGATCATAACAGGCCTCTTTCGGATCAAGGCCCTTTTGACATTGTGTTGCATAAGGACTATAGGAAAACACATCCAGAAGTTACTGTTCTTGATCCTCCTGATGCGATACAACCTTTACATAATCGTCAGTCCATGCTTCAGGCTGTTGCTGATATGGACTTGTCTGATTCCTATGGCAAAGTTGGTGTTCCAAGACAATTGGTTATCAAGAGAGATGCATCATCCATCCCTGATGCTGTTACAGATAGTGGGCTGAAACTACCTCTTGTTGCTAAGCCACTGGTGAATGATGGAAGTGTAAAATCCCATCAACTATCACTTGCCTATGATCGATACTCCCTCCAAAAGCTTGAACCCCCTCTTGTTCTTCAGGAGTTTGTAAACCATGGAGGTGTTCTTTTTAAAGTATATATCGTTGGTGAAGCTATAAAAGTGGTCAGACGTTTCTCTTTACCTGATGTCAGTAAAAGGGAGCTTTCTGAAACCGCAGGTGTATATCGTTTTCCGAGGGTTTCATGTGCTGCAGCTTCAGCAGATGATGCAGATCTGGACCCTAGCATAGCTGAACTTCCTCCACGGCCATTACTCGAGAGACTTGCTAAGGAACTTCGCCGTCGACTGGGTCTGCGGTTATTCAACTTGGACATGATCCGAGAACATGGAACTAGAGATCGGTTTTATGTCATTGACATTAACTACTTCCCTGGGTATGGGAAAATGCCCGAGTATGAGCACATATTTACGGACTTCCTATTGAGCCTGGTGGAGGCAAAGTACAAAAAGAGATCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006793 GO:0006796 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009611 GO:0009791 GO:0009987 GO:0010154 GO:0010214 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044464 GO:0047325 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051765 GO:0051766 GO:0052725 GO:0052726 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Ins134_P3_kin

Protein Analysis

336

Amino Acids

38.25

Weight (kDa)

8.94

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ins134_P3_kin_N	PF17927	40 - 108	8.9e-27	Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain
Ins134_P3_kin	PF05770	128 - 324	4.2e-94	Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013894)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08170 AT4G08170
fragaria_vesca	FvH4_5g33450 FvH4_5g33450
malus_domestica	MD08G1211500.v1.1
prunus_persica	Prupe.1G543400_v2.0.a1 Prupe.1G543400_v2.0.a1
pyrus_communis	pycom08g18220
rosa_chinensis	RchiOBHm_Chr7g0232171
rosa_laevigata	RLG00000001380 RLG00000001383
rosa_roxburghii	Rroxscaffold_3G00228700
rosa_rugosa	Rorug07G0270100
rosa_samantha	Rh7BG398700 Rh7CG445000
rosa_wichuraiana	Rw7G035120 Rw7G035220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	695
Acc36I	ACCTGC	1 cut(s)	695
AccI	GTMKAC	1 cut(s)	832
AciI	CCGC	4 cut(s)	53, 77, 702, 844
AclWI	GGATC	3 cut(s)	246, 302, 859
AcoI	YGGCCR	1 cut(s)	794
AcuI	CTGAAG	3 cut(s)	338, 569, 729
AfaI	GTAC	2 cut(s)	32, 992
AfiI	CCNNNNNNNGG	4 cut(s)	40, 835, 926, 982
AgsI	TTSAA	3 cut(s)	176, 569, 853
AjnI	CCWGG	2 cut(s)	919, 975
AluBI	AGCT	8 cut(s)	156, 172, 185, 565, 641, 691, 743, 779
AluI	AGCT	8 cut(s)	156, 172, 185, 565, 641, 691, 743, 779
Alw21I	GWGCWC	1 cut(s)	951
Alw26I	GTCTC	1 cut(s)	802
AlwI	GGATC	3 cut(s)	246, 302, 859
Ama87I	CYCGRG	2 cut(s)	803, 938
AoxI	GGCC	3 cut(s)	227, 244, 794
ApeKI	GCWGC	3 cut(s)	163, 737, 740
AspS9I	GGNCC	4 cut(s)	19, 73, 245, 766
AsuHPI	GGTGA	2 cut(s)	511, 647
AvaI	CYCGRG	2 cut(s)	803, 938
AvaII	GGWCC	3 cut(s)	19, 73, 766
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	951
BbvI	GCAGC	3 cut(s)	175, 724, 752
BccI	CCATC	3 cut(s)	449, 500, 531
BceAI	ACGGC	2 cut(s)	809, 813
BcgI	CGANNNNNNTGC	4 cut(s)	68, 102, 794, 828
BciT130I	CCWGG	2 cut(s)	921, 977
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	802
BfaI	CTAG	3 cut(s)	186, 771, 882
BfmI	CTRYAG	2 cut(s)	274, 738
BfuAI	ACCTGC	1 cut(s)	695
BglII	AGATCT	2 cut(s)	760, 1001
BisI	GCNGC	3 cut(s)	164, 738, 741
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	3 cut(s)	165, 739, 742
Bme1390I	CCNGG	2 cut(s)	921, 977
Bme18I	GGWCC	3 cut(s)	19, 73, 766
BmeT110I	CYCGRG	2 cut(s)	803, 938
BmgT120I	GGNCC	4 cut(s)	19, 73, 245, 766
BmiI	GGNNCC	3 cut(s)	20, 75, 768
BmrFI	CCNGG	2 cut(s)	921, 977
BmrI	ACTGGG	1 cut(s)	845
BmsI	GCATC	5 cut(s)	307, 421, 439, 443, 745
BmuI	ACTGGG	1 cut(s)	845
BpiI	GAAGAC	1 cut(s)	152
Bpu10I	CCTNAGC	1 cut(s)	816
Bpu1102I	GCTNAGC	1 cut(s)	489
Bsa29I	ATCGAT	1 cut(s)	547
BsaBI	GATNNNNATC	1 cut(s)	759
BsaJI	CCNNGG	5 cut(s)	601, 722, 791, 919, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	974, 1004
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 835, 926, 982
Bse1I	ACTGG	2 cut(s)	501, 840
Bse8I	GATNNNNATC	1 cut(s)	759
BseBI	CCWGG	2 cut(s)	921, 977
BseCI	ATCGAT	1 cut(s)	547
BseDI	CCNNGG	5 cut(s)	601, 722, 791, 919, 920
BseGI	GGATG	3 cut(s)	286, 437, 441
BseJI	GATNNNNATC	1 cut(s)	759
BseLI	CCNNNNNNNGG	4 cut(s)	40, 835, 926, 982
BseNI	ACTGG	2 cut(s)	501, 840
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	175, 724, 752
BshFI	GGCC	3 cut(s)	229, 246, 796
BshVI	ATCGAT	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	951
BsiHKCI	CYCGRG	2 cut(s)	803, 938
BslFI	GGGAC	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	40, 835, 926, 982
BsmAI	GTCTC	1 cut(s)	802
BsmFI	GGGAC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	229, 246, 796
BsoBI	CYCGRG	2 cut(s)	803, 938
Bsp1286I	GDGCHC	1 cut(s)	951
Bsp143I	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
Bsp1720I	GCTNAGC	1 cut(s)	489
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	4 cut(s)	53, 77, 702, 844
BspANI	GGCC	3 cut(s)	229, 246, 796
BspDI	ATCGAT	1 cut(s)	547
BspLI	GGNNCC	3 cut(s)	20, 75, 768
BspMAI	CTGCAG	1 cut(s)	742
BspMI	ACCTGC	1 cut(s)	695
BspPI	GGATC	3 cut(s)	246, 302, 859
BsrI	ACTGG	2 cut(s)	501, 840
BssECI	CCNNGG	5 cut(s)	601, 722, 791, 919, 920
BssMI	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	2 cut(s)	921, 977
Bst4CI	ACNGT	2 cut(s)	35, 301
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstDEI	CTNAG	3 cut(s)	141, 489, 816
BstDSI	CCRYGG	2 cut(s)	601, 791
BstENI	CCTNNNNNAGG	1 cut(s)	980
BstF5I	GGATG	3 cut(s)	286, 437, 441
BstKTI	GATC	8 cut(s)	220, 241, 310, 547, 763, 867, 889, 1004
BstMAI	GTCTC	1 cut(s)	802
BstMBI	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
BstMWI	GCNNNNNNNGC	3 cut(s)	169, 746, 755
BstNI	CCWGG	2 cut(s)	921, 977
BstSCI	CCNGG	2 cut(s)	919, 975
BstSFI	CTRYAG	2 cut(s)	274, 738
BstV1I	GCAGC	3 cut(s)	175, 724, 752
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	2 cut(s)	760, 1001
BstYI	RGATCY	2 cut(s)	760, 1001
Bsu15I	ATCGAT	1 cut(s)	547
BsuRI	GGCC	3 cut(s)	229, 246, 796
BsuTUI	ATCGAT	1 cut(s)	547
BtgI	CCRYGG	2 cut(s)	601, 791
BtsCI	GGATG	3 cut(s)	286, 437, 441
BtsIMutI	CAGTG	1 cut(s)	494
BveI	ACCTGC	1 cut(s)	695
Cfr13I	GGNCC	4 cut(s)	19, 73, 245, 766
ClaI	ATCGAT	1 cut(s)	547
Csp6I	GTAC	2 cut(s)	31, 991
CviAII	CATG	5 cut(s)	349, 602, 732, 862, 875
CviQI	GTAC	2 cut(s)	31, 991
DdeI	CTNAG	3 cut(s)	141, 489, 816
DpnI	GATC	8 cut(s)	219, 240, 309, 546, 762, 866, 888, 1003
DpnII	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
DraI	TTTAAA	1 cut(s)	619
EaeI	YGGCCR	1 cut(s)	794
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	3 cut(s)	19, 73, 766
Eco57I	CTGAAG	3 cut(s)	338, 569, 729
Eco88I	CYCGRG	2 cut(s)	803, 938
EcoNI	CCTNNNNNAGG	1 cut(s)	980
EcoO109I	RGGNCCY	2 cut(s)	73, 245
EcoRII	CCWGG	2 cut(s)	919, 975
EcoT14I	CCWWGG	1 cut(s)	601
EcoT22I	ATGCAT	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	5 cut(s)	352, 605, 735, 865, 878
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FaqI	GGGAC	1 cut(s)	32
FatI	CATG	5 cut(s)	348, 601, 731, 861, 874
FauI	CCCGC	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	832
Fnu4HI	GCNGC	3 cut(s)	164, 738, 741
FokI	GGATG	3 cut(s)	273, 424, 428
Fsp4HI	GCNGC	3 cut(s)	164, 738, 741
FspBI	CTAG	3 cut(s)	186, 771, 882
GluI	GCNGC	3 cut(s)	164, 738, 741
HaeIII	GGCC	3 cut(s)	229, 246, 796
Hin1II	CATG	5 cut(s)	352, 605, 735, 865, 878
HincII	GTYRAC	1 cut(s)	833
HindII	GTYRAC	1 cut(s)	833
HindIII	AAGCTT	2 cut(s)	170, 563
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	2 cut(s)	511, 647
Hpy166II	GTNNAC	3 cut(s)	31, 598, 833
Hpy188I	TCNGA	6 cut(s)	238, 382, 656, 697, 723, 869
Hpy188III	TCNNGA	7 cut(s)	290, 305, 314, 424, 587, 764, 805
Hpy8I	GTNNAC	3 cut(s)	31, 598, 833
Hpy99I	CGWCG	2 cut(s)	122, 834
HpyAV	CCTTC	4 cut(s)	52, 58, 64, 170
HpyCH4III	ACNGT	2 cut(s)	35, 301
HpyCH4IV	ACGT	2 cut(s)	137, 658
HpyCH4V	TGCA	5 cut(s)	163, 265, 434, 740, 758
HpyF10VI	GCNNNNNNNGC	3 cut(s)	169, 746, 755
HpyF3I	CTNAG	3 cut(s)	141, 489, 816
HpySE526I	ACGT	2 cut(s)	137, 658
Hsp92II	CATG	5 cut(s)	352, 605, 735, 865, 878
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
LmnI	GCTCC	1 cut(s)	688
Lsp1109I	GCAGC	3 cut(s)	175, 724, 752
LweI	GCATC	5 cut(s)	307, 421, 439, 443, 745
MaeI	CTAG	3 cut(s)	186, 771, 882
MaeII	ACGT	2 cut(s)	137, 658
MaeIII	GTNAC	2 cut(s)	295, 454
MalI	GATC	8 cut(s)	219, 240, 309, 546, 762, 866, 888, 1003
MboI	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
MboII	GAAGA	3 cut(s)	56, 157, 575
MfeI	CAATTG	2 cut(s)	23, 413
MflI	RGATCY	2 cut(s)	760, 1001
MhlI	GDGCHC	1 cut(s)	951
MluCI	AATT	2 cut(s)	23, 413
Mph1103I	ATGCAT	1 cut(s)	436
MseI	TTAA	2 cut(s)	618, 909
MslI	CAYNNNNRTG	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	921, 977
MunI	CAATTG	2 cut(s)	23, 413
MvaI	CCWGG	2 cut(s)	921, 977
MwoI	GCNNNNNNNGC	3 cut(s)	169, 746, 755
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
NlaIII	CATG	5 cut(s)	352, 605, 735, 865, 878
NlaIV	GGNNCC	3 cut(s)	20, 75, 768
NsiI	ATGCAT	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	803
PaqCI	CACCTGC	1 cut(s)	695
PasI	CCCWGGG	1 cut(s)	920
PceI	AGGCCT	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	383
PflFI	GACNNNGTC	1 cut(s)	837
PkrI	GCNGC	3 cut(s)	165, 739, 742
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	919, 975
PspGI	CCWGG	2 cut(s)	919, 975
PspN4I	GGNNCC	3 cut(s)	20, 75, 768
PspPI	GGNCC	4 cut(s)	19, 73, 245, 766
PspPPI	RGGWCCY	1 cut(s)	73
PstI	CTGCAG	1 cut(s)	742
PsuI	RGATCY	2 cut(s)	760, 1001
PsyI	GACNNNGTC	1 cut(s)	837
RsaI	GTAC	2 cut(s)	32, 992
RsaNI	GTAC	2 cut(s)	31, 991
RseI	CAYNNNNRTG	1 cut(s)	606
SalI	GTCGAC	1 cut(s)	831
SaqAI	TTAA	2 cut(s)	618, 909
SatI	GCNGC	3 cut(s)	164, 738, 741
Sau3AI	GATC	8 cut(s)	217, 238, 307, 544, 760, 864, 886, 1001
Sau96I	GGNCC	4 cut(s)	19, 73, 245, 766
ScrFI	CCNGG	2 cut(s)	921, 977
SduI	GDGCHC	1 cut(s)	951
SfaNI	GCATC	5 cut(s)	307, 421, 439, 443, 745
SfcI	CTRYAG	2 cut(s)	274, 738
Sfr274I	CTCGAG	1 cut(s)	803
SinI	GGWCC	3 cut(s)	19, 73, 766
SlaI	CTCGAG	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	1 cut(s)	803
SmoI	CTYRAG	1 cut(s)	803
Sse9I	AATT	2 cut(s)	23, 413
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	4 cut(s)	53, 77, 702, 844
SspMI	CTAG	3 cut(s)	186, 771, 882
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	919, 975
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	2 cut(s)	35, 301
TaiI	ACGT	2 cut(s)	140, 661
TaqI	TCGA	3 cut(s)	547, 804, 832
TasI	AATT	2 cut(s)	23, 413
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	2 cut(s)	618, 909
Tru9I	TTAA	2 cut(s)	618, 909
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	3 cut(s)	163, 737, 740
TspDTI	ATGAA	1 cut(s)	720
TspGWI	ACGGA	1 cut(s)	974
TspRI	CASTG	1 cut(s)	501
Tth111I	GACNNNGTC	1 cut(s)	837
VpaK11BI	GGWCC	3 cut(s)	19, 73, 766
XagI	CCTNNNNNAGG	1 cut(s)	980
XhoI	CTCGAG	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	832
XspI	CTAG	3 cut(s)	186, 771, 882
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.